Wall clock time and date at job start Tue Mar 31 2020 17:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42097 * 108.57988 * 2 1 4 4 O 1.42104 * 108.58253 * 228.97340 * 2 1 3 5 5 C 1.81406 * 101.92170 * 114.48744 * 2 1 3 6 6 C 1.53000 * 109.46874 * 180.02562 * 5 2 1 7 7 C 1.53001 * 109.46839 * 179.97438 * 6 5 2 8 8 C 1.50706 * 109.47132 * 179.97438 * 7 6 5 9 9 O 1.21275 * 119.99787 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99871 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00097 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47358 * 179.97438 * 11 10 8 13 13 H 1.08993 * 109.51298 * 304.89532 * 12 11 10 14 14 C 1.53298 * 109.55423 * 184.77075 * 12 11 10 15 15 N 1.47164 * 108.41483 * 187.76934 * 14 12 11 16 16 C 1.36937 * 120.99319 * 230.53134 * 15 14 12 17 17 H 1.07997 * 119.99829 * 26.17466 * 16 15 14 18 18 C 1.38809 * 119.99770 * 206.17133 * 16 15 14 19 19 N 1.31622 * 120.00669 * 16.91483 * 18 16 15 20 20 Si 1.86807 * 119.99546 * 196.91329 * 18 16 15 21 21 H 1.48500 * 109.47321 * 60.00582 * 20 18 16 22 22 H 1.48507 * 109.46871 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47382 * 300.00144 * 20 18 16 24 24 C 1.47154 * 118.02638 * 50.47097 * 15 14 12 25 25 C 1.53299 * 108.41323 * 309.52795 * 24 15 14 26 26 O 1.42958 * 109.51380 * 65.00131 * 12 11 10 27 27 H 1.08994 * 109.47159 * 305.51058 * 1 2 3 28 28 H 1.09004 * 109.46802 * 65.51586 * 1 2 3 29 29 H 1.09000 * 109.47036 * 185.50950 * 1 2 3 30 30 H 1.08989 * 109.47190 * 59.99983 * 5 2 1 31 31 H 1.09000 * 109.46667 * 299.99549 * 5 2 1 32 32 H 1.08997 * 109.47789 * 59.99923 * 6 5 2 33 33 H 1.08998 * 109.47230 * 299.99345 * 6 5 2 34 34 H 1.09004 * 109.47326 * 59.99989 * 7 6 5 35 35 H 1.09002 * 109.47290 * 299.99830 * 7 6 5 36 36 H 0.97006 * 120.00190 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47420 * 59.99832 * 11 10 8 38 38 H 1.09002 * 109.46890 * 300.00045 * 11 10 8 39 39 H 1.09003 * 109.68105 * 307.47318 * 14 12 11 40 40 H 1.08997 * 109.68503 * 68.02373 * 14 12 11 41 41 H 0.96998 * 120.00031 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.68490 * 189.79027 * 24 15 14 43 43 H 1.09006 * 109.68639 * 69.27012 * 24 15 14 44 44 H 1.09002 * 109.51380 * 172.20386 * 25 24 15 45 45 H 1.08990 * 109.51556 * 292.35779 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7055 -0.8184 1.7984 7 6 4.0215 -1.4383 3.1610 8 6 5.5155 -1.5204 3.3412 9 8 6.2546 -1.1218 2.4662 10 7 6.0301 -2.0367 4.4748 11 6 7.4823 -2.1160 4.6503 12 6 7.7984 -2.7360 6.0128 13 1 7.2983 -2.1671 6.7965 14 6 9.3129 -2.7109 6.2491 15 7 9.6054 -3.4762 7.4716 16 6 10.3836 -2.9462 8.4660 17 1 10.4459 -1.8752 8.5900 18 6 11.0922 -3.7857 9.3145 19 7 11.2928 -5.0428 8.9801 20 14 11.7613 -3.1310 10.9311 21 1 10.6381 -2.6393 11.7689 22 1 12.4750 -4.2183 11.6479 23 1 12.7032 -2.0151 10.6614 24 6 9.0356 -4.8274 7.5945 25 6 7.5347 -4.7493 7.2927 26 8 7.3403 -4.0899 6.0392 27 1 -0.3633 0.5969 0.8365 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0229 0.0987 30 1 1.7611 -1.7369 1.6665 31 1 1.7610 -0.1170 2.4042 32 1 4.1328 0.1830 1.7474 33 1 4.1335 -1.4368 1.0095 34 1 3.5941 -2.4398 3.2126 35 1 3.5935 -0.8196 3.9498 36 1 5.4389 -2.3551 5.1749 37 1 7.9097 -1.1146 4.5993 38 1 7.9104 -2.7343 3.8612 39 1 9.8243 -3.1658 5.4007 40 1 9.6484 -1.6811 6.3715 41 1 11.7883 -5.6292 9.5729 42 1 9.1874 -5.1991 8.6078 43 1 9.5191 -5.4959 6.8820 44 1 7.1205 -5.7563 7.2424 45 1 7.0335 -4.1878 8.0810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268024687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:02 Heat of formation + Delta-G solvation = -134.000239 kcal Electronic energy + Delta-G solvation = -26322.336538 eV Core-core repulsion = 22275.108885 eV Total energy + Delta-G solvation = -4047.227653 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -39.83992 -38.50782 -37.37469 -36.43159 -35.26561 -34.74582 -34.30476 -31.65298 -30.81726 -30.20972 -28.91197 -27.38100 -25.41194 -23.26624 -22.78931 -21.70690 -20.52454 -19.62337 -19.27047 -17.58085 -16.94585 -16.82173 -16.80533 -16.22875 -16.16679 -15.90782 -15.66226 -15.00700 -14.59848 -14.40074 -14.09972 -13.90486 -13.77113 -13.72876 -13.35758 -13.16461 -13.02284 -12.91227 -12.71826 -12.46758 -12.37780 -12.28554 -12.17162 -11.59662 -11.48113 -11.31758 -11.15764 -10.95657 -10.87532 -10.77094 -10.45143 -10.32581 -10.03011 -9.92214 -9.68425 -9.12047 -9.01544 -8.58105 -6.79994 -5.88276 -3.32052 -0.49346 2.28865 2.60977 3.04570 3.29394 3.32436 3.38340 3.39093 3.53140 4.10164 4.15970 4.20480 4.26298 4.39605 4.49512 4.50008 4.85532 4.88625 5.03168 5.10087 5.11327 5.23604 5.29376 5.44275 5.47757 5.54202 5.72230 5.75856 5.82513 5.99093 6.10585 6.24381 6.32106 6.43977 6.48736 6.71489 7.05619 7.46827 7.50606 7.66396 7.80216 8.20633 8.29192 9.07196 9.69869 10.26601 11.19884 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.038176 B = 0.001706 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.277591 B =16413.403674 C =16598.997299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.421 3.579 3 O -0.937 6.937 4 O -0.937 6.937 5 C -0.612 4.612 6 C -0.098 4.098 7 C -0.133 4.133 8 C 0.507 3.493 9 O -0.544 6.544 10 N -0.720 5.720 11 C 0.129 3.871 12 C 0.065 3.935 13 H 0.058 0.942 14 C 0.121 3.879 15 N -0.594 5.594 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.403 0.597 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.256 0.744 42 H 0.094 0.906 43 H 0.028 0.972 44 H 0.081 0.919 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.602 6.639 -11.612 28.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.603 3.397 3 O -0.934 6.934 4 O -0.934 6.934 5 C -0.741 4.741 6 C -0.137 4.137 7 C -0.174 4.174 8 C 0.293 3.707 9 O -0.421 6.421 10 N -0.372 5.372 11 C 0.005 3.995 12 C 0.005 3.995 13 H 0.076 0.924 14 C -0.006 4.006 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.309 6.309 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.152 0.848 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.237 0.763 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.047 0.953 44 H 0.100 0.900 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.449 7.007 -12.954 27.691 hybrid contribution -0.430 -0.216 2.209 2.261 sum -23.879 6.791 -10.745 27.052 Atomic orbital electron populations 1.30300 1.27114 1.11526 1.11803 1.07856 0.78146 0.75910 0.77798 1.93616 1.78856 1.34489 1.86479 1.93619 1.78839 1.66999 1.53936 1.30368 1.06322 1.14087 1.23298 1.21062 0.89737 1.04226 0.98656 1.21608 0.93349 1.03701 0.98733 1.20584 0.90725 0.77490 0.81898 1.90727 1.61650 1.48108 1.41617 1.45975 1.08531 1.63162 1.19485 1.21428 0.79965 1.00887 0.97204 1.22802 0.97857 0.83868 0.94947 0.92396 1.21448 0.91221 0.97098 0.90838 1.44055 1.57461 1.14413 1.15809 1.19153 1.21031 0.91703 1.06746 0.91365 1.25051 0.97754 0.96427 1.00375 1.70024 1.42735 1.05567 1.36344 0.86312 0.78658 0.77882 0.83568 1.20985 1.21530 1.20767 1.21446 0.87777 0.86787 1.02660 1.23325 0.99957 0.95826 0.84698 1.87784 1.82800 1.25115 1.35242 0.85361 0.85271 0.85345 0.84776 0.84811 0.89228 0.89196 0.88389 0.88483 0.76272 0.90113 0.90624 0.95194 0.91760 0.93406 0.88768 0.95348 0.90047 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -1.20 10.62 101.05 1.07 -0.13 16 2 S 2.42 13.79 5.36 -107.50 -0.58 13.22 16 3 O -0.94 -9.38 18.10 -57.83 -1.05 -10.43 16 4 O -0.94 -9.46 18.10 -57.83 -1.05 -10.50 16 5 C -0.61 -2.25 5.81 37.16 0.22 -2.03 16 6 C -0.10 -0.78 4.51 -26.73 -0.12 -0.90 16 7 C -0.13 -0.99 5.70 -27.88 -0.16 -1.14 16 8 C 0.51 6.23 7.83 -10.98 -0.09 6.14 16 9 O -0.54 -8.95 15.98 5.56 0.09 -8.86 16 10 N -0.72 -8.69 5.50 -60.30 -0.33 -9.02 16 11 C 0.13 1.88 5.35 -4.05 -0.02 1.86 16 12 C 0.07 1.09 2.81 -26.58 -0.07 1.02 16 13 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 14 C 0.12 2.48 6.03 -3.53 -0.02 2.46 16 15 N -0.59 -14.59 3.05 -171.81 -0.52 -15.11 16 16 C -0.26 -6.89 9.65 -15.06 -0.15 -7.03 16 17 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 18 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.66 11.14 55.49 0.62 -25.05 16 20 Si 0.91 21.16 29.59 -169.99 -5.03 16.13 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.14 3.24 5.44 -3.53 -0.02 3.22 16 25 C 0.04 0.73 6.99 37.31 0.26 1.00 16 26 O -0.39 -7.02 10.33 -35.23 -0.36 -7.38 16 27 H 0.13 0.00 8.14 -51.93 -0.42 -0.42 16 28 H 0.13 0.23 8.14 -51.92 -0.42 -0.19 16 29 H 0.13 0.01 8.14 -51.92 -0.42 -0.42 16 30 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.13 0.14 8.14 -51.92 -0.42 -0.29 16 32 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.09 0.84 8.10 -51.93 -0.42 0.41 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.40 4.01 8.47 -40.82 -0.35 3.66 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.09 2.41 6.14 -51.93 -0.32 2.09 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -38.63 383.09 -9.01 -47.64 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.39 Total: -0.84 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 0.82 Total: 4.44 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.24 Total: -49.18 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -2.37 Total: -37.18 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Atomic # 16 Polarization: 13.79 SS G_CDS: -0.58 Total: 13.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.63 -9.01 -47.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268024687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.365 kcal (2) G-P(sol) polarization free energy of solvation -38.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds