Wall clock time and date at job start Tue Mar 31 2020 17:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42097 * 108.57988 * 2 1 4 4 O 1.42104 * 108.58253 * 228.97340 * 2 1 3 5 5 C 1.81406 * 101.92170 * 114.48744 * 2 1 3 6 6 C 1.53000 * 109.46874 * 180.02562 * 5 2 1 7 7 C 1.53001 * 109.46839 * 179.97438 * 6 5 2 8 8 C 1.50706 * 109.47132 * 179.97438 * 7 6 5 9 9 O 1.21275 * 119.99787 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99871 * 180.02562 * 8 7 6 11 11 C 1.46492 * 120.00097 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47358 * 179.97438 * 11 10 8 13 13 H 1.08993 * 109.51298 * 304.89532 * 12 11 10 14 14 C 1.53298 * 109.55423 * 184.77075 * 12 11 10 15 15 N 1.47164 * 108.41483 * 187.76934 * 14 12 11 16 16 C 1.36937 * 120.99319 * 230.53134 * 15 14 12 17 17 H 1.07997 * 119.99829 * 26.17466 * 16 15 14 18 18 C 1.38809 * 119.99770 * 206.17133 * 16 15 14 19 19 N 1.31622 * 120.00669 * 16.91483 * 18 16 15 20 20 Si 1.86807 * 119.99546 * 196.91329 * 18 16 15 21 21 H 1.48500 * 109.47321 * 60.00582 * 20 18 16 22 22 H 1.48507 * 109.46871 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47382 * 300.00144 * 20 18 16 24 24 C 1.47154 * 118.02638 * 50.47097 * 15 14 12 25 25 C 1.53299 * 108.41323 * 309.52795 * 24 15 14 26 26 O 1.42958 * 109.51380 * 65.00131 * 12 11 10 27 27 H 1.08994 * 109.47159 * 305.51058 * 1 2 3 28 28 H 1.09004 * 109.46802 * 65.51586 * 1 2 3 29 29 H 1.09000 * 109.47036 * 185.50950 * 1 2 3 30 30 H 1.08989 * 109.47190 * 59.99983 * 5 2 1 31 31 H 1.09000 * 109.46667 * 299.99549 * 5 2 1 32 32 H 1.08997 * 109.47789 * 59.99923 * 6 5 2 33 33 H 1.08998 * 109.47230 * 299.99345 * 6 5 2 34 34 H 1.09004 * 109.47326 * 59.99989 * 7 6 5 35 35 H 1.09002 * 109.47290 * 299.99830 * 7 6 5 36 36 H 0.97006 * 120.00190 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47420 * 59.99832 * 11 10 8 38 38 H 1.09002 * 109.46890 * 300.00045 * 11 10 8 39 39 H 1.09003 * 109.68105 * 307.47318 * 14 12 11 40 40 H 1.08997 * 109.68503 * 68.02373 * 14 12 11 41 41 H 0.96998 * 120.00031 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.68490 * 189.79027 * 24 15 14 43 43 H 1.09006 * 109.68639 * 69.27012 * 24 15 14 44 44 H 1.09002 * 109.51380 * 172.20386 * 25 24 15 45 45 H 1.08990 * 109.51556 * 292.35779 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7357 1.6153 6 6 3.7055 -0.8184 1.7984 7 6 4.0215 -1.4383 3.1610 8 6 5.5155 -1.5204 3.3412 9 8 6.2546 -1.1218 2.4662 10 7 6.0301 -2.0367 4.4748 11 6 7.4823 -2.1160 4.6503 12 6 7.7984 -2.7360 6.0128 13 1 7.2983 -2.1671 6.7965 14 6 9.3129 -2.7109 6.2491 15 7 9.6054 -3.4762 7.4716 16 6 10.3836 -2.9462 8.4660 17 1 10.4459 -1.8752 8.5900 18 6 11.0922 -3.7857 9.3145 19 7 11.2928 -5.0428 8.9801 20 14 11.7613 -3.1310 10.9311 21 1 10.6381 -2.6393 11.7689 22 1 12.4750 -4.2183 11.6479 23 1 12.7032 -2.0151 10.6614 24 6 9.0356 -4.8274 7.5945 25 6 7.5347 -4.7493 7.2927 26 8 7.3403 -4.0899 6.0392 27 1 -0.3633 0.5969 0.8365 28 1 -0.3633 0.4259 -0.9353 29 1 -0.3633 -1.0229 0.0987 30 1 1.7611 -1.7369 1.6665 31 1 1.7610 -0.1170 2.4042 32 1 4.1328 0.1830 1.7474 33 1 4.1335 -1.4368 1.0095 34 1 3.5941 -2.4398 3.2126 35 1 3.5935 -0.8196 3.9498 36 1 5.4389 -2.3551 5.1749 37 1 7.9097 -1.1146 4.5993 38 1 7.9104 -2.7343 3.8612 39 1 9.8243 -3.1658 5.4007 40 1 9.6484 -1.6811 6.3715 41 1 11.7883 -5.6292 9.5729 42 1 9.1874 -5.1991 8.6078 43 1 9.5191 -5.4959 6.8820 44 1 7.1205 -5.7563 7.2424 45 1 7.0335 -4.1878 8.0810 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268024687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:01 Heat of formation + Delta-G solvation = -166.649829 kcal Electronic energy + Delta-G solvation = -26323.752331 eV Core-core repulsion = 22275.108885 eV Total energy + Delta-G solvation = -4048.643445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90799 -39.97973 -37.94066 -36.99259 -36.55254 -35.87359 -35.47131 -33.38228 -32.40360 -30.45727 -29.75591 -28.86453 -26.90185 -24.98676 -23.79597 -22.88971 -21.72640 -20.99628 -19.75554 -18.90905 -18.29954 -17.57456 -17.41768 -17.25682 -17.05909 -16.80695 -16.68081 -16.51712 -16.13652 -15.51451 -15.35925 -15.19456 -15.00852 -14.59505 -14.38058 -14.07222 -13.86867 -13.81529 -13.54298 -13.21194 -13.13650 -13.01150 -12.98459 -12.93136 -12.88704 -12.66351 -12.53967 -12.19818 -12.10112 -11.90891 -11.87583 -11.85874 -11.38118 -11.34272 -10.88469 -10.79027 -10.53876 -10.09753 -8.76683 -7.92201 -5.39747 -0.86246 1.47115 1.48460 1.55911 1.67733 1.97313 2.17679 2.47993 2.77173 2.84456 3.18786 3.22764 3.48131 3.59235 3.90142 3.93257 3.98334 4.04841 4.15960 4.19177 4.28767 4.29674 4.47315 4.49015 4.52775 4.61881 4.68396 4.70786 4.76016 4.80839 4.89864 4.99288 5.04121 5.05790 5.17414 5.23640 5.42802 5.54560 5.60410 6.24780 6.32261 6.59161 7.05154 7.28786 7.73156 8.26700 9.13664 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.038176 B = 0.001706 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.277591 B =16413.403674 C =16598.997299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.632 4.632 2 S 2.405 3.595 3 O -0.996 6.996 4 O -0.997 6.997 5 C -0.591 4.591 6 C -0.112 4.112 7 C -0.123 4.123 8 C 0.500 3.500 9 O -0.595 6.595 10 N -0.712 5.712 11 C 0.139 3.861 12 C 0.081 3.919 13 H 0.073 0.927 14 C 0.115 3.885 15 N -0.612 5.612 16 C -0.268 4.268 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.973 3.027 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.277 1.277 24 C 0.141 3.859 25 C 0.055 3.945 26 O -0.389 6.389 27 H 0.157 0.843 28 H 0.131 0.869 29 H 0.156 0.844 30 H 0.171 0.829 31 H 0.173 0.827 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.417 0.583 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.014 0.986 40 H 0.071 0.929 41 H 0.252 0.748 42 H 0.068 0.932 43 H -0.003 1.003 44 H 0.110 0.890 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.444 7.079 -10.039 30.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.595 3.405 3 O -0.993 6.993 4 O -0.994 6.994 5 C -0.722 4.722 6 C -0.151 4.151 7 C -0.163 4.163 8 C 0.289 3.711 9 O -0.476 6.476 10 N -0.364 5.364 11 C 0.014 3.986 12 C 0.022 3.978 13 H 0.091 0.909 14 C -0.012 4.012 15 N -0.337 5.337 16 C -0.398 4.398 17 H 0.090 0.910 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.199 1.199 22 H -0.221 1.221 23 H -0.203 1.203 24 C 0.016 3.984 25 C -0.023 4.023 26 O -0.308 6.308 27 H 0.175 0.825 28 H 0.149 0.851 29 H 0.175 0.825 30 H 0.189 0.811 31 H 0.191 0.809 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.254 0.746 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.015 0.985 44 H 0.128 0.872 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.298 7.470 -11.408 30.514 hybrid contribution 0.752 -0.357 1.690 1.884 sum -26.547 7.113 -9.718 29.151 Atomic orbital electron populations 1.30052 1.21061 1.14107 1.13307 1.07795 0.80293 0.74219 0.78187 1.93543 1.81256 1.37059 1.87468 1.93545 1.81265 1.67674 1.56934 1.30179 1.03340 1.16765 1.21895 1.21088 0.92805 1.02591 0.98570 1.21697 0.89310 1.06185 0.99127 1.21559 0.92822 0.75988 0.80779 1.90714 1.63374 1.50206 1.43267 1.45864 1.07351 1.63062 1.20132 1.21133 0.81982 1.00378 0.95140 1.22616 0.94948 0.83719 0.96524 0.90950 1.21619 0.94025 0.96732 0.88798 1.44339 1.57621 1.14966 1.16752 1.19522 1.20892 0.92086 1.07296 0.90965 1.25845 0.98520 0.96711 1.03505 1.70188 1.43892 1.06767 1.37325 0.85267 0.78109 0.77025 0.79573 1.19932 1.22053 1.20279 1.21336 0.91034 0.85803 1.00253 1.23156 0.96103 0.97781 0.85229 1.87801 1.82311 1.25640 1.35048 0.82464 0.85096 0.82524 0.81076 0.80925 0.91493 0.91756 0.85241 0.84846 0.74579 0.89821 0.92508 0.96793 0.91084 0.93912 0.91375 0.98527 0.87234 0.92823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 0.04 10.62 113.37 1.20 1.25 16 2 S 2.41 25.77 5.36 -56.49 -0.30 25.46 16 3 O -1.00 -20.88 18.10 -127.37 -2.30 -23.18 16 4 O -1.00 -21.19 18.10 -127.37 -2.31 -23.50 16 5 C -0.59 -2.29 5.81 71.98 0.42 -1.87 16 6 C -0.11 -1.63 4.51 30.59 0.14 -1.49 16 7 C -0.12 -1.39 5.70 29.85 0.17 -1.22 16 8 C 0.50 11.53 7.83 87.66 0.69 12.22 16 9 O -0.59 -19.95 15.98 -3.01 -0.05 -20.00 16 10 N -0.71 -15.59 5.50 -463.08 -2.55 -18.13 16 11 C 0.14 3.92 5.35 86.38 0.46 4.38 16 12 C 0.08 2.62 2.81 30.69 0.09 2.70 16 13 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.11 4.70 6.03 86.35 0.52 5.22 16 15 N -0.61 -30.36 3.05 -697.49 -2.13 -32.48 16 16 C -0.27 -14.44 9.65 84.03 0.81 -13.63 16 17 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 18 C -0.05 -2.75 4.95 84.86 0.42 -2.33 16 19 N -0.94 -54.57 11.14 21.65 0.24 -54.32 16 20 Si 0.97 43.69 29.59 68.60 2.03 45.72 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.14 6.68 5.44 86.35 0.47 7.15 16 25 C 0.05 1.93 6.99 72.08 0.50 2.44 16 26 O -0.39 -13.22 10.33 -148.98 -1.54 -14.76 16 27 H 0.16 -0.82 8.14 -2.39 -0.02 -0.84 16 28 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.16 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H 0.17 -0.54 8.14 -2.40 -0.02 -0.56 16 31 H 0.17 -0.61 8.14 -2.39 -0.02 -0.63 16 32 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 33 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 34 H 0.13 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.42 6.76 8.47 -92.70 -0.79 5.98 16 37 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 2.76 7.96 -2.39 -0.02 2.74 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 42 H 0.07 3.56 6.14 -2.39 -0.01 3.55 16 43 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 44 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -90.51 383.09 -2.82 -93.33 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.20 Total: 7.06 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: 5.89 Total: 14.81 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -4.44 Total: -104.94 kcal Atomic # 8 Polarization: -75.24 SS G_CDS: -6.20 Total: -81.44 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 25.77 SS G_CDS: -0.30 Total: 25.46 kcal Total: -90.51 -2.82 -93.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268024687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.321 kcal (2) G-P(sol) polarization free energy of solvation -90.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds