Wall clock time and date at job start Tue Mar 31 2020 17:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42093 * 108.58144 * 2 1 4 4 O 1.42099 * 108.57404 * 228.97355 * 2 1 3 5 5 C 1.81401 * 101.92055 * 114.49062 * 2 1 3 6 6 C 1.52997 * 109.47149 * 179.97438 * 5 2 1 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 2 8 8 O 1.21288 * 120.00038 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62757 * 359.71777 * 9 7 6 11 11 C 1.52761 * 109.00942 * 233.58164 * 10 9 7 12 12 C 1.53030 * 109.38680 * 305.59238 * 11 10 9 13 13 O 1.42906 * 109.45026 * 301.22594 * 12 11 10 14 14 C 1.52999 * 109.46444 * 181.25920 * 12 11 10 15 15 N 1.46502 * 109.46872 * 59.93058 * 14 12 11 16 16 C 1.36936 * 119.99658 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00313 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99652 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00605 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99820 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47403 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47008 * 120.00354 * 20 18 16 23 23 H 1.48502 * 109.47120 * 240.00137 * 20 18 16 24 24 C 1.53046 * 109.54043 * 61.23743 * 12 11 10 25 25 C 1.46923 * 120.63207 * 180.02562 * 9 7 6 26 26 H 1.09006 * 109.46416 * 305.51350 * 1 2 3 27 27 H 1.08998 * 109.46669 * 65.50845 * 1 2 3 28 28 H 1.08991 * 109.47334 * 185.51185 * 1 2 3 29 29 H 1.09002 * 109.47085 * 299.99728 * 5 2 1 30 30 H 1.09001 * 109.47417 * 59.99854 * 5 2 1 31 31 H 1.09002 * 109.47153 * 299.99990 * 6 5 2 32 32 H 1.08998 * 109.47533 * 59.99620 * 6 5 2 33 33 H 1.08995 * 109.58981 * 353.42312 * 10 9 7 34 34 H 1.09000 * 109.58271 * 113.84675 * 10 9 7 35 35 H 1.09004 * 109.56405 * 185.55408 * 11 10 9 36 36 H 1.09002 * 109.35858 * 65.50385 * 11 10 9 37 37 H 0.96701 * 113.99704 * 300.06170 * 13 12 11 38 38 H 1.08993 * 109.47782 * 179.97438 * 14 12 11 39 39 H 1.09001 * 109.46910 * 299.93714 * 14 12 11 40 40 H 0.96996 * 120.00098 * 0.02562 * 15 14 12 41 41 H 0.96997 * 120.00500 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.50003 * 178.68592 * 24 12 11 43 43 H 1.09009 * 109.49381 * 58.58424 * 24 12 11 44 44 H 1.09006 * 109.58539 * 246.15266 * 25 9 7 45 45 H 1.09000 * 109.58998 * 6.57998 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7055 -0.8197 1.7979 7 6 4.0168 -1.4303 3.1400 8 8 3.1144 -1.7659 3.8776 9 7 5.2980 -1.6036 3.5206 10 6 6.4020 -1.2078 2.6355 11 6 7.3398 -2.3988 2.4467 12 6 7.7862 -2.9160 3.8160 13 8 8.4452 -1.8674 4.5290 14 6 8.7503 -4.0891 3.6284 15 7 9.9204 -3.6426 2.8682 16 6 10.9248 -4.5263 2.5759 17 1 10.8546 -5.5522 2.9060 18 6 12.0332 -4.1034 1.8551 19 7 12.1191 -2.8531 1.4532 20 14 13.4037 -5.3087 1.4568 21 1 13.0687 -6.6422 2.0178 22 1 13.5559 -5.4160 -0.0165 23 1 14.6758 -4.8261 2.0520 24 6 6.5639 -3.3826 4.6102 25 6 5.6173 -2.1981 4.8257 26 1 -0.3632 0.5970 0.8366 27 1 -0.3632 0.4260 -0.9352 28 1 -0.3633 -1.0228 0.0987 29 1 1.7611 -0.1172 2.4042 30 1 1.7610 -1.7371 1.6664 31 1 4.1328 -1.4385 1.0088 32 1 4.1336 0.1813 1.7465 33 1 6.0032 -0.9015 1.6685 34 1 6.9519 -0.3809 3.0848 35 1 8.2130 -2.0884 1.8727 36 1 6.8151 -3.1906 1.9120 37 1 9.2309 -1.5222 4.0833 38 1 9.0687 -4.4573 4.6036 39 1 8.2477 -4.8891 3.0850 40 1 9.9837 -2.7212 2.5721 41 1 12.8935 -2.5577 0.9492 42 1 6.8849 -3.7724 5.5762 43 1 6.0465 -4.1652 4.0552 44 1 6.1020 -1.4537 5.4576 45 1 4.7010 -2.5450 5.3033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274528623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:06 Heat of formation + Delta-G solvation = -141.768568 kcal Electronic energy + Delta-G solvation = -27485.517600 eV Core-core repulsion = 23437.953088 eV Total energy + Delta-G solvation = -4047.564513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.48420 -38.63432 -37.35081 -36.40637 -35.62045 -34.04696 -33.68497 -31.96045 -31.18024 -30.39606 -30.06869 -27.06396 -25.41242 -23.62998 -23.36310 -21.77387 -20.28771 -19.27848 -19.03832 -17.85584 -17.52888 -16.76638 -16.62943 -16.19615 -16.01001 -15.82485 -15.53382 -14.99963 -14.44531 -14.41080 -14.17154 -13.92980 -13.66215 -13.59350 -13.40736 -13.21888 -13.09530 -12.76053 -12.59603 -12.44939 -12.35565 -12.30283 -11.94075 -11.89172 -11.57487 -11.47805 -11.17196 -11.09299 -11.06458 -10.97838 -10.87980 -10.33603 -10.14957 -9.95119 -9.72428 -9.46903 -8.98216 -8.65115 -7.04448 -5.86832 -3.15964 -0.45577 2.30370 2.43692 2.81145 3.25763 3.38584 3.44915 3.46662 3.60011 4.03436 4.27660 4.30022 4.36196 4.48715 4.52559 4.55943 4.74649 4.92534 5.00147 5.08228 5.10595 5.15714 5.18446 5.35506 5.36321 5.47626 5.51893 5.58778 5.75080 5.84031 5.92896 5.98895 6.06159 6.28153 6.33047 6.49848 6.63450 6.66042 7.28707 7.62929 7.98832 8.03772 8.32135 9.43012 9.96124 10.30245 11.35980 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.002500 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.809330 B =11195.350118 C =12287.381956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.420 3.580 3 O -0.938 6.938 4 O -0.936 6.936 5 C -0.594 4.594 6 C -0.136 4.136 7 C 0.523 3.477 8 O -0.547 6.547 9 N -0.604 5.604 10 C 0.106 3.894 11 C -0.159 4.159 12 C 0.130 3.870 13 O -0.561 6.561 14 C 0.129 3.871 15 N -0.729 5.729 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.117 4.117 25 C 0.118 3.882 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.383 0.617 38 H 0.029 0.971 39 H 0.026 0.974 40 H 0.380 0.620 41 H 0.256 0.744 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.398 6.574 0.781 24.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.602 3.398 3 O -0.935 6.935 4 O -0.933 6.933 5 C -0.723 4.723 6 C -0.177 4.177 7 C 0.310 3.690 8 O -0.426 6.426 9 N -0.336 5.336 10 C -0.016 4.016 11 C -0.198 4.198 12 C 0.089 3.911 13 O -0.368 6.368 14 C 0.001 3.999 15 N -0.375 5.375 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.156 4.156 25 C -0.004 4.004 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.215 0.785 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.682 6.438 0.929 24.559 hybrid contribution 0.837 -0.626 -0.238 1.072 sum -22.845 5.812 0.691 23.583 Atomic orbital electron populations 1.30248 1.26617 1.11740 1.11836 1.07859 0.78485 0.75855 0.77569 1.93614 1.79016 1.34430 1.86446 1.93626 1.78962 1.66934 1.53790 1.30151 1.03961 1.15141 1.23076 1.21405 0.93337 1.04612 0.98298 1.20170 0.82392 0.78603 0.87836 1.90668 1.45222 1.51691 1.54980 1.48136 1.05360 1.61246 1.18894 1.21761 0.87908 0.98217 0.93748 1.22492 1.00409 0.98220 0.98674 1.21284 0.91802 0.88085 0.89956 1.86370 1.45628 1.53759 1.51058 1.21311 0.88682 0.94310 0.95624 1.42287 1.18886 1.11264 1.65086 1.19239 0.97031 0.92461 1.28422 0.91094 1.24733 0.98676 0.96442 1.00932 1.69631 1.30705 1.14881 1.42980 0.86101 0.82134 0.80106 0.77724 1.20573 1.21808 1.21797 1.21850 0.94532 0.97604 1.01574 1.21546 0.99288 0.95611 0.83954 0.85240 0.85181 0.85204 0.84255 0.84211 0.86967 0.87080 0.89911 0.90180 0.88743 0.90705 0.76739 0.95348 0.95669 0.78531 0.93428 0.89886 0.90461 0.90459 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.96 10.62 101.05 1.07 -0.88 16 2 S 2.42 15.50 5.36 -107.50 -0.58 14.93 16 3 O -0.94 -9.47 18.10 -57.83 -1.05 -10.51 16 4 O -0.94 -9.72 18.10 -57.83 -1.05 -10.76 16 5 C -0.59 -3.77 5.09 37.16 0.19 -3.58 16 6 C -0.14 -1.19 4.05 -27.89 -0.11 -1.30 16 7 C 0.52 6.29 7.70 -10.99 -0.08 6.21 16 8 O -0.55 -7.96 15.40 5.55 0.09 -7.88 16 9 N -0.60 -7.30 2.98 -173.05 -0.52 -7.81 16 10 C 0.11 1.21 6.08 -3.93 -0.02 1.19 16 11 C -0.16 -2.21 4.91 -26.84 -0.13 -2.34 16 12 C 0.13 1.96 0.71 -90.58 -0.06 1.90 16 13 O -0.56 -8.83 11.71 -35.23 -0.41 -9.24 16 14 C 0.13 2.45 5.40 -4.04 -0.02 2.42 16 15 N -0.73 -17.05 5.07 -59.91 -0.30 -17.35 16 16 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -26.87 13.06 55.49 0.72 -26.14 16 20 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C -0.12 -1.53 5.11 -26.63 -0.14 -1.67 16 25 C 0.12 1.48 6.19 -3.73 -0.02 1.46 16 26 H 0.13 0.18 8.14 -51.92 -0.42 -0.25 16 27 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.14 0.71 8.10 -51.92 -0.42 0.29 16 30 H 0.14 0.75 8.10 -51.92 -0.42 0.33 16 31 H 0.11 0.87 7.68 -51.93 -0.40 0.47 16 32 H 0.11 0.81 7.95 -51.93 -0.41 0.40 16 33 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 34 H 0.08 0.91 7.81 -51.93 -0.41 0.50 16 35 H 0.09 1.48 6.82 -51.93 -0.35 1.12 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.38 6.08 7.85 45.56 0.36 6.43 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.38 8.99 5.58 -40.82 -0.23 8.76 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 44 H 0.08 0.99 7.81 -51.93 -0.41 0.59 16 45 H 0.09 1.12 7.01 -51.93 -0.36 0.76 16 LS Contribution 373.91 15.07 5.63 5.63 Total: -1.00 -37.22 373.91 -8.35 -45.57 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.29 Total: 10.36 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 0.42 Total: -3.64 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.09 Total: -51.31 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -2.42 Total: -38.40 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 15.50 SS G_CDS: -0.58 Total: 14.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.22 -8.35 -45.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274528623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.201 kcal (2) G-P(sol) polarization free energy of solvation -37.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds