Wall clock time and date at job start Tue Mar 31 2020 17:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42093 * 108.58144 * 2 1 4 4 O 1.42099 * 108.57404 * 228.97355 * 2 1 3 5 5 C 1.81401 * 101.92055 * 114.49062 * 2 1 3 6 6 C 1.52997 * 109.47149 * 179.97438 * 5 2 1 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 2 8 8 O 1.21288 * 120.00038 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.62757 * 359.71777 * 9 7 6 11 11 C 1.52761 * 109.00942 * 233.58164 * 10 9 7 12 12 C 1.53030 * 109.38680 * 305.59238 * 11 10 9 13 13 O 1.42906 * 109.45026 * 301.22594 * 12 11 10 14 14 C 1.52999 * 109.46444 * 181.25920 * 12 11 10 15 15 N 1.46502 * 109.46872 * 59.93058 * 14 12 11 16 16 C 1.36936 * 119.99658 * 180.02562 * 15 14 12 17 17 H 1.08000 * 120.00313 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99652 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00605 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99820 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47403 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47008 * 120.00354 * 20 18 16 23 23 H 1.48502 * 109.47120 * 240.00137 * 20 18 16 24 24 C 1.53046 * 109.54043 * 61.23743 * 12 11 10 25 25 C 1.46923 * 120.63207 * 180.02562 * 9 7 6 26 26 H 1.09006 * 109.46416 * 305.51350 * 1 2 3 27 27 H 1.08998 * 109.46669 * 65.50845 * 1 2 3 28 28 H 1.08991 * 109.47334 * 185.51185 * 1 2 3 29 29 H 1.09002 * 109.47085 * 299.99728 * 5 2 1 30 30 H 1.09001 * 109.47417 * 59.99854 * 5 2 1 31 31 H 1.09002 * 109.47153 * 299.99990 * 6 5 2 32 32 H 1.08998 * 109.47533 * 59.99620 * 6 5 2 33 33 H 1.08995 * 109.58981 * 353.42312 * 10 9 7 34 34 H 1.09000 * 109.58271 * 113.84675 * 10 9 7 35 35 H 1.09004 * 109.56405 * 185.55408 * 11 10 9 36 36 H 1.09002 * 109.35858 * 65.50385 * 11 10 9 37 37 H 0.96701 * 113.99704 * 300.06170 * 13 12 11 38 38 H 1.08993 * 109.47782 * 179.97438 * 14 12 11 39 39 H 1.09001 * 109.46910 * 299.93714 * 14 12 11 40 40 H 0.96996 * 120.00098 * 0.02562 * 15 14 12 41 41 H 0.96997 * 120.00500 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.50003 * 178.68592 * 24 12 11 43 43 H 1.09009 * 109.49381 * 58.58424 * 24 12 11 44 44 H 1.09006 * 109.58539 * 246.15266 * 25 9 7 45 45 H 1.09000 * 109.58998 * 6.57998 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7055 -0.8197 1.7979 7 6 4.0168 -1.4303 3.1400 8 8 3.1144 -1.7659 3.8776 9 7 5.2980 -1.6036 3.5206 10 6 6.4020 -1.2078 2.6355 11 6 7.3398 -2.3988 2.4467 12 6 7.7862 -2.9160 3.8160 13 8 8.4452 -1.8674 4.5290 14 6 8.7503 -4.0891 3.6284 15 7 9.9204 -3.6426 2.8682 16 6 10.9248 -4.5263 2.5759 17 1 10.8546 -5.5522 2.9060 18 6 12.0332 -4.1034 1.8551 19 7 12.1191 -2.8531 1.4532 20 14 13.4037 -5.3087 1.4568 21 1 13.0687 -6.6422 2.0178 22 1 13.5559 -5.4160 -0.0165 23 1 14.6758 -4.8261 2.0520 24 6 6.5639 -3.3826 4.6102 25 6 5.6173 -2.1981 4.8257 26 1 -0.3632 0.5970 0.8366 27 1 -0.3632 0.4260 -0.9352 28 1 -0.3633 -1.0228 0.0987 29 1 1.7611 -0.1172 2.4042 30 1 1.7610 -1.7371 1.6664 31 1 4.1328 -1.4385 1.0088 32 1 4.1336 0.1813 1.7465 33 1 6.0032 -0.9015 1.6685 34 1 6.9519 -0.3809 3.0848 35 1 8.2130 -2.0884 1.8727 36 1 6.8151 -3.1906 1.9120 37 1 9.2309 -1.5222 4.0833 38 1 9.0687 -4.4573 4.6036 39 1 8.2477 -4.8891 3.0850 40 1 9.9837 -2.7212 2.5721 41 1 12.8935 -2.5577 0.9492 42 1 6.8849 -3.7724 5.5762 43 1 6.0465 -4.1652 4.0552 44 1 6.1020 -1.4537 5.4576 45 1 4.7010 -2.5450 5.3033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274528623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:33 Heat of formation + Delta-G solvation = -172.598073 kcal Electronic energy + Delta-G solvation = -27486.854468 eV Core-core repulsion = 23437.953088 eV Total energy + Delta-G solvation = -4048.901380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 33.28 seconds Orbital eigenvalues (eV) -41.50448 -39.80105 -37.98007 -37.03677 -36.85006 -35.76750 -34.40187 -33.44164 -32.36615 -31.84754 -30.35979 -28.43909 -26.48102 -25.14514 -24.45071 -23.12897 -21.45239 -20.03736 -19.80760 -19.46472 -18.62593 -17.49092 -17.33567 -17.15582 -16.85045 -16.72065 -16.62646 -16.49177 -15.82123 -15.68354 -15.25917 -14.98130 -14.81018 -14.43659 -14.39133 -14.04193 -13.95032 -13.88173 -13.69131 -13.33695 -13.15889 -13.10530 -13.01147 -12.99014 -12.81971 -12.72142 -12.46126 -12.28166 -12.22176 -12.06617 -12.00526 -11.98038 -11.56083 -11.32163 -10.98724 -10.94912 -10.70823 -9.68710 -9.02589 -7.97446 -5.25518 -0.92660 1.47467 1.48467 1.51650 1.57584 1.87421 1.92354 2.54349 2.74603 3.14714 3.24278 3.36938 3.41014 3.55442 3.65142 3.76406 3.84082 3.90276 4.04333 4.15134 4.22955 4.26731 4.28305 4.35332 4.48276 4.54763 4.58896 4.72455 4.76004 4.81016 4.87398 4.90197 4.98203 5.02338 5.07137 5.15345 5.31540 5.48127 5.49911 6.24675 6.34334 6.73558 7.04954 7.32969 8.03605 8.28908 9.25332 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.002500 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.809330 B =11195.350118 C =12287.381956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.636 4.636 2 S 2.431 3.569 3 O -0.981 6.981 4 O -0.983 6.983 5 C -0.591 4.591 6 C -0.147 4.147 7 C 0.521 3.479 8 O -0.574 6.574 9 N -0.606 5.606 10 C 0.111 3.889 11 C -0.154 4.154 12 C 0.137 3.863 13 O -0.562 6.562 14 C 0.128 3.872 15 N -0.736 5.736 16 C -0.246 4.246 17 H 0.070 0.930 18 C -0.068 4.068 19 N -0.962 5.962 20 Si 0.969 3.031 21 H -0.270 1.270 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.112 4.112 25 C 0.122 3.878 26 H 0.153 0.847 27 H 0.139 0.861 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.152 0.848 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.382 0.618 38 H 0.020 0.980 39 H 0.026 0.974 40 H 0.377 0.623 41 H 0.252 0.748 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.366 6.453 0.900 26.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.789 4.789 2 S 2.618 3.382 3 O -0.978 6.978 4 O -0.980 6.980 5 C -0.720 4.720 6 C -0.187 4.187 7 C 0.310 3.690 8 O -0.454 6.454 9 N -0.338 5.338 10 C -0.012 4.012 11 C -0.192 4.192 12 C 0.096 3.904 13 O -0.369 6.369 14 C 0.001 3.999 15 N -0.381 5.381 16 C -0.378 4.378 17 H 0.088 0.912 18 C -0.260 4.260 19 N -0.613 5.613 20 Si 0.798 3.202 21 H -0.195 1.195 22 H -0.220 1.220 23 H -0.221 1.221 24 C -0.150 4.150 25 C 0.000 4.000 26 H 0.171 0.829 27 H 0.158 0.842 28 H 0.170 0.830 29 H 0.172 0.828 30 H 0.170 0.830 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.231 0.769 38 H 0.038 0.962 39 H 0.044 0.956 40 H 0.211 0.789 41 H 0.061 0.939 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.633 6.305 1.058 26.418 hybrid contribution 1.345 -0.628 -0.204 1.498 sum -24.288 5.677 0.854 24.957 Atomic orbital electron populations 1.30076 1.21409 1.13940 1.13506 1.07268 0.80158 0.74126 0.76685 1.93556 1.81116 1.36269 1.86904 1.93565 1.81132 1.67651 1.55647 1.30130 1.02498 1.16186 1.23170 1.21569 0.95403 1.05255 0.96461 1.20683 0.81800 0.77965 0.88595 1.90651 1.45815 1.52864 1.56050 1.48195 1.05741 1.61186 1.18697 1.21768 0.87430 0.96937 0.95023 1.22386 1.00210 0.99224 0.97426 1.21245 0.91427 0.86550 0.91207 1.86374 1.45585 1.53698 1.51266 1.21443 0.88118 0.96029 0.94306 1.42388 1.19509 1.10786 1.65370 1.19565 0.97740 0.92931 1.27536 0.91157 1.25454 1.00948 0.98006 1.01640 1.69758 1.31181 1.16327 1.44007 0.85150 0.79280 0.78654 0.77100 1.19496 1.22008 1.22057 1.21822 0.93619 0.98056 1.01516 1.21451 0.98971 0.95194 0.84386 0.82855 0.84242 0.82987 0.82820 0.83035 0.86121 0.85726 0.87421 0.89921 0.90640 0.90726 0.76937 0.96224 0.95584 0.78894 0.93872 0.89454 0.89878 0.90753 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 15 The total number of SCF iterations 823. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.68 10.62 113.37 1.20 -0.47 16 2 S 2.43 27.79 5.36 -56.49 -0.30 27.49 16 3 O -0.98 -19.16 18.10 -127.37 -2.30 -21.46 16 4 O -0.98 -19.90 18.10 -127.37 -2.30 -22.20 16 5 C -0.59 -6.29 5.09 71.98 0.37 -5.92 16 6 C -0.15 -2.32 4.05 29.85 0.12 -2.20 16 7 C 0.52 11.69 7.70 87.66 0.67 12.36 16 8 O -0.57 -15.79 15.40 -3.05 -0.05 -15.84 16 9 N -0.61 -13.79 2.98 -819.81 -2.44 -16.23 16 10 C 0.11 2.39 6.08 86.22 0.52 2.91 16 11 C -0.15 -4.19 4.91 30.52 0.15 -4.04 16 12 C 0.14 4.07 0.71 -10.77 -0.01 4.06 16 13 O -0.56 -17.52 11.71 -148.98 -1.74 -19.27 16 14 C 0.13 4.86 5.40 86.38 0.47 5.33 16 15 N -0.74 -34.67 5.07 -343.46 -1.74 -36.41 16 16 C -0.25 -13.24 9.99 84.03 0.84 -12.40 16 17 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 18 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 19 N -0.96 -55.97 13.06 21.65 0.28 -55.69 16 20 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 24 C -0.11 -2.80 5.11 30.66 0.16 -2.65 16 25 C 0.12 2.92 6.19 86.35 0.53 3.45 16 26 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.15 -0.16 8.14 -2.40 -0.02 -0.18 16 29 H 0.15 1.19 8.10 -2.39 -0.02 1.17 16 30 H 0.15 1.26 8.10 -2.39 -0.02 1.24 16 31 H 0.12 1.70 7.68 -2.39 -0.02 1.68 16 32 H 0.12 1.61 7.95 -2.39 -0.02 1.59 16 33 H 0.11 1.79 5.93 -2.39 -0.01 1.78 16 34 H 0.08 1.78 7.81 -2.39 -0.02 1.76 16 35 H 0.08 2.37 6.82 -2.39 -0.02 2.36 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.38 12.21 7.85 -74.06 -0.58 11.63 16 38 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.38 18.13 5.58 -92.71 -0.52 17.62 16 41 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.07 1.83 7.81 -2.38 -0.02 1.81 16 45 H 0.09 2.15 7.01 -2.39 -0.02 2.13 16 Total: -1.00 -79.70 373.91 -3.17 -82.87 By element: Atomic # 1 Polarization: 32.56 SS G_CDS: -0.09 Total: 32.47 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 5.50 Total: -2.84 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -3.90 Total: -108.33 kcal Atomic # 8 Polarization: -72.37 SS G_CDS: -6.40 Total: -78.77 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 27.79 SS G_CDS: -0.30 Total: 27.49 kcal Total: -79.70 -3.17 -82.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274528623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.733 kcal (2) G-P(sol) polarization free energy of solvation -79.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 33.28 seconds