Wall clock time and date at job start Tue Mar 31 2020 18:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48494 * 109.47239 * 240.00104 * 3 2 1 5 5 H 1.48503 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47330 * 119.99616 * 3 2 1 7 7 C 1.38813 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99631 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00293 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.49313 * 179.97438 * 9 7 2 11 11 C 1.53942 * 86.11630 * 155.35936 * 10 9 7 12 12 C 1.52995 * 113.74554 * 269.15353 * 11 10 9 13 13 C 1.53002 * 109.47667 * 172.49467 * 12 11 10 14 14 O 1.42901 * 109.47411 * 178.16571 * 13 12 11 15 15 N 1.46504 * 113.73995 * 137.95559 * 11 10 9 16 16 C 1.34770 * 120.00201 * 66.83360 * 15 11 10 17 17 O 1.21285 * 120.00063 * 354.78199 * 16 15 11 18 18 C 1.50703 * 120.00166 * 174.77492 * 16 15 11 19 19 H 1.09001 * 113.22869 * 47.52955 * 18 16 15 20 20 C 1.52881 * 113.99007 * 180.02562 * 18 16 15 21 21 C 1.50768 * 89.76520 * 113.94670 * 20 18 16 22 22 C 1.38248 * 149.30080 * 180.02562 * 21 20 18 23 23 C 1.38140 * 120.15841 * 179.97438 * 22 21 20 24 24 C 1.38463 * 119.72144 * 0.02562 * 23 22 21 25 25 F 1.35102 * 119.94113 * 180.02562 * 24 23 22 26 26 C 1.38206 * 120.12575 * 0.02562 * 24 23 22 27 27 C 1.38371 * 90.24480 * 359.97438 * 21 20 18 28 28 C 1.47812 * 134.45701 * 359.86656 * 9 7 2 29 29 H 0.97004 * 120.00060 * 0.02562 * 1 2 3 30 30 H 1.09001 * 113.76927 * 41.06348 * 10 9 7 31 31 H 1.08998 * 113.87429 * 269.67331 * 10 9 7 32 32 H 1.09005 * 109.47563 * 292.50015 * 12 11 10 33 33 H 1.09006 * 109.46856 * 52.49967 * 12 11 10 34 34 H 1.08996 * 109.46974 * 298.17093 * 13 12 11 35 35 H 1.08999 * 109.46397 * 58.16892 * 13 12 11 36 36 H 0.96701 * 113.99484 * 180.02562 * 14 13 12 37 37 H 0.97008 * 119.99762 * 246.83341 * 15 11 10 38 38 H 1.09003 * 113.16359 * 358.72484 * 20 18 16 39 39 H 1.08994 * 113.16596 * 229.17364 * 20 18 16 40 40 H 1.08004 * 119.92385 * 359.94847 * 22 21 20 41 41 H 1.07999 * 120.13878 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.85272 * 180.02562 * 26 24 23 43 43 H 1.09000 * 113.77263 * 90.38137 * 28 9 7 44 44 H 1.09000 * 113.83575 * 318.91590 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0829 0.6409 12 6 0.3643 -4.0562 2.1705 13 6 -1.0685 -4.1505 2.6986 14 8 -1.0494 -4.1686 4.1274 15 7 -0.3333 -5.2613 0.0980 16 6 0.1765 -6.4908 0.3094 17 8 1.2465 -6.6161 0.8665 18 6 -0.5830 -7.7101 -0.1463 19 1 -0.9482 -7.6312 -1.1703 20 6 0.1201 -9.0320 0.1631 21 6 -0.9869 -9.3890 1.1225 22 6 -1.5370 -10.2812 2.0238 23 6 -2.7300 -9.9845 2.6538 24 6 -3.3732 -8.7897 2.3784 25 9 -4.5399 -8.4947 2.9924 26 6 -2.8238 -7.8980 1.4766 27 6 -1.6230 -8.1924 0.8430 28 6 -0.1058 -2.7570 0.0025 29 1 -0.4850 0.8401 -0.0004 30 1 2.5623 -4.0324 0.6558 31 1 1.8326 -4.2367 -0.9962 32 1 0.9449 -4.9006 2.5422 33 1 0.8170 -3.1254 2.5125 34 1 -1.6403 -3.2891 2.3538 35 1 -1.5320 -5.0656 2.3299 36 1 -1.9258 -4.2278 4.5317 37 1 -1.1508 -5.1566 -0.4136 38 1 1.0853 -8.9000 0.6520 39 1 0.1747 -9.7000 -0.6964 40 1 -1.0331 -11.2127 2.2357 41 1 -3.1597 -10.6820 3.3576 42 1 -3.3290 -6.9672 1.2653 43 1 -0.5312 -2.8722 -0.9944 44 1 -0.7189 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276075243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:35 Heat of formation + Delta-G solvation = -7.444000 kcal Electronic energy + Delta-G solvation = -29156.748854 eV Core-core repulsion = 24991.937930 eV Total energy + Delta-G solvation = -4164.810924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.11051 -41.22203 -39.62159 -37.77652 -36.37646 -35.17121 -33.71288 -31.95322 -31.09261 -30.36335 -27.89060 -27.08366 -25.41556 -25.08791 -23.43662 -22.67234 -21.76514 -21.10400 -19.84696 -18.68768 -17.78801 -17.27868 -17.04466 -16.80796 -16.72752 -15.79893 -15.55209 -15.38135 -15.16281 -14.76982 -14.63842 -14.26388 -14.13329 -13.88935 -13.75689 -13.57962 -13.07658 -12.81236 -12.51912 -12.22384 -11.98000 -11.84554 -11.71129 -11.61866 -11.36123 -11.07119 -10.94720 -10.90613 -10.77227 -10.73304 -10.24284 -10.00452 -9.76259 -9.65148 -9.40726 -9.11347 -8.92015 -8.69772 -8.64238 -6.95220 -5.82342 -3.14237 0.80877 0.91965 2.64828 3.17848 3.37238 3.40449 3.43475 3.45148 3.71727 3.92900 4.23011 4.26811 4.43544 4.46962 4.65674 4.82384 4.95150 5.04846 5.18150 5.20444 5.24591 5.37735 5.46260 5.49921 5.52639 5.65391 5.71047 5.77548 5.80468 5.84972 5.90129 5.92542 6.30024 6.34256 6.43161 6.48202 6.58806 6.62548 6.71980 6.81095 7.08174 7.26655 7.45440 7.74749 7.88964 7.91997 8.42618 8.99445 9.65690 10.51559 11.35196 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.003075 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.400298 B = 9102.086119 C = 9893.109788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.221 4.221 8 H 0.082 0.918 9 N -0.604 5.604 10 C 0.129 3.871 11 C 0.123 3.877 12 C -0.094 4.094 13 C 0.083 3.917 14 O -0.574 6.574 15 N -0.710 5.710 16 C 0.530 3.470 17 O -0.525 6.525 18 C -0.072 4.072 19 H 0.126 0.874 20 C -0.054 4.054 21 C -0.126 4.126 22 C -0.065 4.065 23 C -0.145 4.145 24 C 0.097 3.903 25 F -0.139 7.139 26 C -0.125 4.125 27 C -0.090 4.090 28 C 0.167 3.833 29 H 0.255 0.745 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.035 0.965 36 H 0.372 0.628 37 H 0.398 0.602 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.132 0.868 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.031 0.969 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 -20.496 1.248 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.348 4.348 8 H 0.100 0.900 9 N -0.331 5.331 10 C 0.002 3.998 11 C 0.037 3.963 12 C -0.133 4.133 13 C 0.005 3.995 14 O -0.378 6.378 15 N -0.361 5.361 16 C 0.314 3.686 17 O -0.401 6.401 18 C -0.093 4.093 19 H 0.144 0.856 20 C -0.091 4.091 21 C -0.127 4.127 22 C -0.083 4.083 23 C -0.164 4.164 24 C 0.077 3.923 25 F -0.117 7.117 26 C -0.144 4.144 27 C -0.091 4.091 28 C 0.041 3.959 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.217 0.783 37 H 0.232 0.768 38 H 0.129 0.871 39 H 0.114 0.886 40 H 0.150 0.850 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.049 0.951 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.820 -20.134 1.599 21.318 hybrid contribution -1.058 1.029 -0.260 1.499 sum -7.878 -19.105 1.338 20.709 Atomic orbital electron populations 1.69773 1.05012 1.25583 1.56613 1.24767 0.95710 0.97545 1.02236 0.86170 0.78492 0.82939 0.78002 1.21178 1.21550 1.20968 1.18957 0.90303 0.81545 1.44014 0.90028 1.45699 1.01810 0.99531 1.86053 1.22787 0.94475 0.85587 0.96910 1.22999 0.95792 0.84365 0.93152 1.21318 0.95520 1.04210 0.92228 1.22121 0.98308 0.99007 0.80051 1.86494 1.33561 1.97484 1.20305 1.46177 1.28844 1.05830 1.55239 1.19780 0.85693 0.83812 0.79278 1.90701 1.21341 1.86061 1.42002 1.21479 0.93611 0.94915 0.99322 0.85594 1.21490 0.97758 0.92868 0.96955 1.21789 0.98288 0.95210 0.97384 1.19990 0.94288 0.99187 0.94857 1.21032 0.96443 0.96545 1.02383 1.17313 0.83803 0.95346 0.95794 1.91513 1.45374 1.93562 1.81265 1.20453 0.96252 1.00221 0.97458 1.21656 0.93507 0.96454 0.97484 1.22584 0.89069 0.87352 0.96929 0.93537 0.93002 0.94618 0.90966 0.89095 0.93296 0.94705 0.78263 0.76845 0.87067 0.88561 0.85042 0.84229 0.84947 0.95128 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 11.39 55.49 0.63 -25.85 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -6.12 10.70 -15.06 -0.16 -6.28 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -15.20 3.55 -177.50 -0.63 -15.83 16 10 C 0.13 2.76 7.55 -2.97 -0.02 2.74 16 11 C 0.12 2.27 0.67 -134.03 -0.09 2.19 16 12 C -0.09 -1.81 4.81 -26.73 -0.13 -1.94 16 13 C 0.08 1.36 6.83 37.16 0.25 1.61 16 14 O -0.57 -9.40 13.66 -35.23 -0.48 -9.88 16 15 N -0.71 -10.16 4.53 -49.07 -0.22 -10.38 16 16 C 0.53 7.52 7.05 -10.99 -0.08 7.44 16 17 O -0.53 -9.37 14.12 5.55 0.08 -9.29 16 18 C -0.07 -0.74 4.47 -92.62 -0.41 -1.15 16 19 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 20 C -0.05 -0.51 7.54 -31.53 -0.24 -0.74 16 21 C -0.13 -1.28 7.59 -104.54 -0.79 -2.08 16 22 C -0.07 -0.58 10.03 -39.61 -0.40 -0.98 16 23 C -0.15 -1.32 10.04 -39.53 -0.40 -1.72 16 24 C 0.10 1.03 7.29 -39.51 -0.29 0.74 16 25 F -0.14 -1.56 17.26 2.25 0.04 -1.52 16 26 C -0.13 -1.34 10.02 -39.34 -0.39 -1.73 16 27 C -0.09 -0.97 6.82 -107.58 -0.73 -1.70 16 28 C 0.17 3.67 6.70 -2.83 -0.02 3.65 16 29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.05 1.14 8.10 -51.93 -0.42 0.72 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.46 7.09 -51.93 -0.37 1.10 16 33 H 0.09 2.03 8.02 -51.93 -0.42 1.61 16 34 H 0.05 0.81 7.54 -51.93 -0.39 0.42 16 35 H 0.03 0.52 7.62 -51.93 -0.40 0.12 16 36 H 0.37 4.17 9.12 45.56 0.42 4.58 16 37 H 0.40 4.58 8.70 -40.82 -0.36 4.22 16 38 H 0.11 1.23 7.04 -51.93 -0.37 0.86 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.98 6.55 -51.93 -0.34 1.64 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -33.60 371.66 -9.15 -42.75 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.14 Total: 7.67 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -4.00 Total: -0.22 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.22 Total: -52.05 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.40 Total: -19.17 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.60 -9.15 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276075243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.303 kcal (2) G-P(sol) polarization free energy of solvation -33.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds