Wall clock time and date at job start Tue Mar 31 2020 18:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00156 * 2 1 4 4 H 1.48494 * 109.47239 * 240.00104 * 3 2 1 5 5 H 1.48503 * 109.47003 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47330 * 119.99616 * 3 2 1 7 7 C 1.38813 * 119.99620 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99631 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00293 * 0.02562 * 7 2 1 10 10 C 1.47583 * 134.49313 * 179.97438 * 9 7 2 11 11 C 1.53942 * 86.11630 * 155.35936 * 10 9 7 12 12 C 1.52995 * 113.74554 * 269.15353 * 11 10 9 13 13 C 1.53002 * 109.47667 * 172.49467 * 12 11 10 14 14 O 1.42901 * 109.47411 * 178.16571 * 13 12 11 15 15 N 1.46504 * 113.73995 * 137.95559 * 11 10 9 16 16 C 1.34770 * 120.00201 * 66.83360 * 15 11 10 17 17 O 1.21285 * 120.00063 * 354.78199 * 16 15 11 18 18 C 1.50703 * 120.00166 * 174.77492 * 16 15 11 19 19 H 1.09001 * 113.22869 * 47.52955 * 18 16 15 20 20 C 1.52881 * 113.99007 * 180.02562 * 18 16 15 21 21 C 1.50768 * 89.76520 * 113.94670 * 20 18 16 22 22 C 1.38248 * 149.30080 * 180.02562 * 21 20 18 23 23 C 1.38140 * 120.15841 * 179.97438 * 22 21 20 24 24 C 1.38463 * 119.72144 * 0.02562 * 23 22 21 25 25 F 1.35102 * 119.94113 * 180.02562 * 24 23 22 26 26 C 1.38206 * 120.12575 * 0.02562 * 24 23 22 27 27 C 1.38371 * 90.24480 * 359.97438 * 21 20 18 28 28 C 1.47812 * 134.45701 * 359.86656 * 9 7 2 29 29 H 0.97004 * 120.00060 * 0.02562 * 1 2 3 30 30 H 1.09001 * 113.76927 * 41.06348 * 10 9 7 31 31 H 1.08998 * 113.87429 * 269.67331 * 10 9 7 32 32 H 1.09005 * 109.47563 * 292.50015 * 12 11 10 33 33 H 1.09006 * 109.46856 * 52.49967 * 12 11 10 34 34 H 1.08996 * 109.46974 * 298.17093 * 13 12 11 35 35 H 1.08999 * 109.46397 * 58.16892 * 13 12 11 36 36 H 0.96701 * 113.99484 * 180.02562 * 14 13 12 37 37 H 0.97008 * 119.99762 * 246.83341 * 15 11 10 38 38 H 1.09003 * 113.16359 * 358.72484 * 20 18 16 39 39 H 1.08994 * 113.16596 * 229.17364 * 20 18 16 40 40 H 1.08004 * 119.92385 * 359.94847 * 22 21 20 41 41 H 1.07999 * 120.13878 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.85272 * 180.02562 * 26 24 23 43 43 H 1.09000 * 113.77263 * 90.38137 * 28 9 7 44 44 H 1.09000 * 113.83575 * 318.91590 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0829 0.6409 12 6 0.3643 -4.0562 2.1705 13 6 -1.0685 -4.1505 2.6986 14 8 -1.0494 -4.1686 4.1274 15 7 -0.3333 -5.2613 0.0980 16 6 0.1765 -6.4908 0.3094 17 8 1.2465 -6.6161 0.8665 18 6 -0.5830 -7.7101 -0.1463 19 1 -0.9482 -7.6312 -1.1703 20 6 0.1201 -9.0320 0.1631 21 6 -0.9869 -9.3890 1.1225 22 6 -1.5370 -10.2812 2.0238 23 6 -2.7300 -9.9845 2.6538 24 6 -3.3732 -8.7897 2.3784 25 9 -4.5399 -8.4947 2.9924 26 6 -2.8238 -7.8980 1.4766 27 6 -1.6230 -8.1924 0.8430 28 6 -0.1058 -2.7570 0.0025 29 1 -0.4850 0.8401 -0.0004 30 1 2.5623 -4.0324 0.6558 31 1 1.8326 -4.2367 -0.9962 32 1 0.9449 -4.9006 2.5422 33 1 0.8170 -3.1254 2.5125 34 1 -1.6403 -3.2891 2.3538 35 1 -1.5320 -5.0656 2.3299 36 1 -1.9258 -4.2278 4.5317 37 1 -1.1508 -5.1566 -0.4136 38 1 1.0853 -8.9000 0.6520 39 1 0.1747 -9.7000 -0.6964 40 1 -1.0331 -11.2127 2.2357 41 1 -3.1597 -10.6820 3.3576 42 1 -3.3290 -6.9672 1.2653 43 1 -0.5312 -2.8722 -0.9944 44 1 -0.7189 -2.1399 0.6593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276075243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:34 Heat of formation + Delta-G solvation = -30.664504 kcal Electronic energy + Delta-G solvation = -29157.755770 eV Core-core repulsion = 24991.937930 eV Total energy + Delta-G solvation = -4165.817841 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.91171 -42.15587 -40.96161 -39.11378 -37.74999 -35.98998 -35.28645 -33.78025 -31.98515 -31.77497 -29.16711 -28.48587 -26.85931 -26.39556 -24.91711 -23.63120 -23.23088 -22.17862 -20.88823 -20.18922 -18.81686 -18.70338 -18.44151 -18.06843 -17.52923 -17.15307 -16.68071 -16.61591 -16.35580 -16.11822 -15.90070 -15.58753 -15.47421 -15.19791 -14.80935 -14.59631 -14.40205 -13.98029 -13.93881 -13.41856 -13.35123 -13.22904 -12.94729 -12.88665 -12.76031 -12.64561 -12.59768 -12.28343 -12.13326 -12.07923 -11.73567 -11.65105 -11.43384 -11.04420 -10.90394 -10.78246 -10.07959 -9.93904 -9.47133 -8.96593 -7.93532 -5.26380 0.06315 0.18786 1.45776 1.48663 1.54443 1.55237 2.07118 2.47881 2.56481 2.91025 3.10436 3.19565 3.26121 3.37781 3.46524 3.54527 3.59800 3.88357 3.98437 4.09117 4.24687 4.26785 4.29225 4.36730 4.44053 4.53957 4.65615 4.68894 4.72652 4.84862 4.85984 4.97794 4.98894 5.07538 5.10048 5.11649 5.14971 5.19890 5.21538 5.46662 5.60782 5.69534 5.87188 5.88821 6.60098 6.83793 6.89714 7.28070 7.56478 8.49462 9.23030 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.003075 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.400298 B = 9102.086119 C = 9893.109788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.057 4.057 3 Si 0.977 3.023 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.239 4.239 8 H 0.079 0.921 9 N -0.632 5.632 10 C 0.128 3.872 11 C 0.155 3.845 12 C -0.087 4.087 13 C 0.093 3.907 14 O -0.592 6.592 15 N -0.702 5.702 16 C 0.530 3.470 17 O -0.563 6.563 18 C -0.062 4.062 19 H 0.161 0.839 20 C -0.049 4.049 21 C -0.134 4.134 22 C -0.067 4.067 23 C -0.142 4.142 24 C 0.077 3.923 25 F -0.146 7.146 26 C -0.135 4.135 27 C -0.106 4.106 28 C 0.172 3.828 29 H 0.251 0.749 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.395 0.605 37 H 0.415 0.585 38 H 0.093 0.907 39 H 0.128 0.872 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.138 0.862 43 H 0.037 0.963 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.991 -22.394 0.766 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.251 4.251 3 Si 0.805 3.195 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.367 4.367 8 H 0.097 0.903 9 N -0.359 5.359 10 C 0.002 3.998 11 C 0.068 3.932 12 C -0.126 4.126 13 C 0.016 3.984 14 O -0.400 6.400 15 N -0.354 5.354 16 C 0.317 3.683 17 O -0.441 6.441 18 C -0.083 4.083 19 H 0.178 0.822 20 C -0.086 4.086 21 C -0.134 4.134 22 C -0.085 4.085 23 C -0.161 4.161 24 C 0.058 3.942 25 F -0.125 7.125 26 C -0.153 4.153 27 C -0.106 4.106 28 C 0.046 3.954 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.245 0.755 37 H 0.252 0.748 38 H 0.111 0.889 39 H 0.146 0.854 40 H 0.176 0.824 41 H 0.179 0.821 42 H 0.156 0.844 43 H 0.055 0.945 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.619 -22.074 1.107 23.378 hybrid contribution -0.806 1.527 -0.057 1.727 sum -8.425 -20.548 1.051 22.232 Atomic orbital electron populations 1.69929 1.06090 1.25876 1.57557 1.25533 0.96643 1.00470 1.02444 0.85184 0.77280 0.78930 0.78117 1.20386 1.21619 1.20613 1.19273 0.90694 0.83033 1.43678 0.90303 1.45981 1.03408 1.00212 1.86296 1.22866 0.95717 0.83962 0.97304 1.22198 0.93813 0.84775 0.92432 1.21168 0.97187 1.01548 0.92732 1.21944 0.96123 0.99949 0.80414 1.86435 1.35942 1.97524 1.20090 1.45936 1.29246 1.04805 1.55392 1.20462 0.85301 0.84434 0.78119 1.90698 1.23256 1.86625 1.43529 1.21482 0.93119 0.92827 1.00888 0.82170 1.21507 0.96437 0.92846 0.97843 1.22049 0.98389 0.95366 0.97635 1.20323 0.94113 0.99990 0.94034 1.21349 0.96255 0.96224 1.02230 1.17562 0.83978 0.96244 0.96396 1.91491 1.45841 1.93709 1.81461 1.20590 0.96495 1.00654 0.97608 1.21714 0.93779 0.97026 0.98125 1.22465 0.87414 0.88600 0.96872 0.93999 0.94294 0.93654 0.92097 0.92930 0.93474 0.92489 0.75531 0.74776 0.88901 0.85432 0.82428 0.82050 0.84381 0.94520 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.26 11.39 21.65 0.25 -55.01 16 2 C -0.06 -3.23 5.50 84.86 0.47 -2.76 16 3 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.24 -13.53 10.70 84.04 0.90 -12.63 16 8 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 9 N -0.63 -32.55 3.55 -715.50 -2.54 -35.09 16 10 C 0.13 5.55 7.55 86.48 0.65 6.20 16 11 C 0.16 5.78 0.67 5.36 0.00 5.78 16 12 C -0.09 -3.44 4.81 30.59 0.15 -3.29 16 13 C 0.09 3.02 6.83 71.98 0.49 3.52 16 14 O -0.59 -18.93 13.66 -148.98 -2.04 -20.96 16 15 N -0.70 -19.13 4.53 -427.55 -1.94 -21.07 16 16 C 0.53 14.23 7.05 87.66 0.62 14.85 16 17 O -0.56 -19.79 14.12 -3.04 -0.04 -19.83 16 18 C -0.06 -1.11 4.47 -12.09 -0.05 -1.16 16 19 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 20 C -0.05 -0.80 7.54 27.48 0.21 -0.59 16 21 C -0.13 -2.37 7.59 -19.81 -0.15 -2.52 16 22 C -0.07 -1.00 10.03 22.25 0.22 -0.77 16 23 C -0.14 -2.23 10.04 22.30 0.22 -2.01 16 24 C 0.08 1.52 7.29 22.32 0.16 1.68 16 25 F -0.15 -3.11 17.26 44.97 0.78 -2.34 16 26 C -0.13 -2.63 10.02 22.43 0.22 -2.41 16 27 C -0.11 -2.02 6.82 -21.78 -0.15 -2.17 16 28 C 0.17 7.69 6.70 86.45 0.58 8.27 16 29 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 30 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.52 7.09 -2.38 -0.02 2.51 16 33 H 0.05 2.45 8.02 -2.38 -0.02 2.43 16 34 H 0.05 1.55 7.54 -2.39 -0.02 1.53 16 35 H 0.06 1.60 7.62 -2.39 -0.02 1.58 16 36 H 0.40 8.26 9.12 -74.06 -0.68 7.59 16 37 H 0.42 8.66 8.70 -92.70 -0.81 7.85 16 38 H 0.09 1.91 7.04 -2.39 -0.02 1.90 16 39 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 2.85 6.55 -2.39 -0.02 2.83 16 Total: -1.00 -74.28 371.66 0.62 -73.67 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -0.43 Total: 22.94 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 4.55 Total: 9.97 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -4.23 Total: -111.16 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -2.08 Total: -40.80 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.28 0.62 -73.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276075243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.002 kcal (2) G-P(sol) polarization free energy of solvation -74.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds