Wall clock time and date at job start Tue Mar 31 2020 18:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00179 * 2 1 4 4 H 1.48500 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47109 * 300.00037 * 3 2 1 6 6 H 1.48504 * 109.47424 * 59.99882 * 3 2 1 7 7 C 1.38811 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00034 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47150 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.02130 * 54.93681 * 11 10 9 13 13 C 1.54265 * 110.03213 * 293.54400 * 11 10 9 14 14 C 1.54887 * 104.20056 * 217.05730 * 13 11 10 15 15 C 1.54890 * 102.91108 * 37.84875 * 14 13 11 16 16 H 1.09003 * 110.48855 * 80.83451 * 15 14 13 17 17 N 1.46505 * 110.48380 * 203.47245 * 15 14 13 18 18 C 1.34778 * 119.99736 * 273.54592 * 17 15 14 19 19 O 1.21695 * 120.00365 * 0.02562 * 18 17 15 20 20 C 1.46584 * 119.99463 * 179.97438 * 18 17 15 21 21 C 1.35877 * 125.41400 * 180.02562 * 20 18 17 22 22 C 1.39169 * 114.00004 * 179.97438 * 21 20 18 23 23 C 1.34367 * 113.99914 * 359.97438 * 22 21 20 24 24 S 1.71487 * 111.07534 * 359.78798 * 23 22 21 25 25 C 1.52363 * 110.38874 * 180.02562 * 23 22 21 26 26 C 1.54161 * 104.90380 * 17.54193 * 25 23 22 27 27 C 1.52815 * 136.19162 * 179.97438 * 22 21 20 28 28 C 1.53877 * 110.07490 * 176.35509 * 11 10 9 29 29 H 0.96996 * 120.00058 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99759 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47176 * 59.99913 * 10 9 7 32 32 H 1.09012 * 109.47372 * 300.00517 * 10 9 7 33 33 H 1.09004 * 110.48891 * 98.37703 * 13 11 10 34 34 H 1.09004 * 110.59809 * 335.79343 * 13 11 10 35 35 H 1.09002 * 110.75856 * 156.25785 * 14 13 11 36 36 H 1.09006 * 110.75640 * 279.44771 * 14 13 11 37 37 H 0.96995 * 120.00041 * 93.54691 * 17 15 14 38 38 H 1.07996 * 123.00219 * 359.94079 * 21 20 18 39 39 H 1.09005 * 110.35803 * 136.40061 * 25 23 22 40 40 H 1.09005 * 110.35416 * 258.68639 * 25 23 22 41 41 H 1.08998 * 110.96054 * 91.40570 * 26 25 23 42 42 H 1.09000 * 110.96036 * 215.14881 * 26 25 23 43 43 H 1.09001 * 110.33847 * 281.26731 * 27 22 21 44 44 H 1.09006 * 110.32863 * 43.49188 * 27 22 21 45 45 H 1.08999 * 110.03493 * 238.58864 * 28 11 10 46 46 H 1.09003 * 110.03187 * 359.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.3745 -4.7208 -0.8397 13 6 0.2799 -4.8454 1.3272 14 6 0.1104 -6.3531 1.6392 15 6 1.4621 -6.9553 1.1817 16 1 2.2242 -6.8073 1.9468 17 7 1.3112 -8.3800 0.8754 18 6 1.4279 -9.2963 1.8569 19 8 1.6581 -8.9402 2.9976 20 6 1.2763 -10.7217 1.5504 21 6 1.3712 -11.7350 2.4507 22 6 1.1857 -12.9999 1.9008 23 6 0.9457 -12.9913 0.5788 24 16 0.9359 -11.3903 -0.0357 25 6 0.7555 -14.4128 0.0645 26 6 0.4700 -15.2551 1.3237 27 6 1.1829 -14.4378 2.4183 28 6 1.8170 -6.1584 -0.0931 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7145 0.8894 32 1 2.6849 -3.7145 -0.8906 33 1 -0.6931 -4.3694 1.2053 34 1 0.8478 -4.3539 2.1172 35 1 -0.0417 -6.5119 2.7068 36 1 -0.7146 -6.7758 1.0658 37 1 1.1273 -8.6638 -0.0337 38 1 1.5731 -11.5733 3.4992 39 1 -0.0904 -14.4579 -0.6216 40 1 1.6630 -14.7625 -0.4278 41 1 -0.6008 -15.3155 1.5180 42 1 0.9053 -16.2504 1.2340 43 1 2.2042 -14.7944 2.5519 44 1 0.6329 -14.5012 3.3572 45 1 1.4932 -6.7092 -0.9762 46 1 2.8914 -5.9801 -0.1377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284242844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:17 Heat of formation + Delta-G solvation = -7.307521 kcal Electronic energy + Delta-G solvation = -25106.216502 eV Core-core repulsion = 21507.624672 eV Total energy + Delta-G solvation = -3598.591830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.26546 -39.60261 -38.01185 -34.91568 -34.67768 -33.42992 -31.08663 -29.15295 -28.79230 -28.77449 -27.33891 -24.59822 -23.69415 -22.22116 -22.15918 -20.76177 -20.51265 -19.52349 -18.90278 -18.26289 -16.98819 -16.58352 -16.29619 -16.13151 -15.20782 -14.99982 -14.86492 -14.50096 -14.24375 -13.75717 -13.41697 -13.35042 -13.24636 -13.07048 -12.81025 -12.75169 -12.41569 -12.22143 -12.12534 -11.72397 -11.70139 -11.43675 -11.31821 -11.25779 -11.03760 -10.84814 -10.68834 -10.61234 -10.30573 -10.20029 -10.12116 -9.87235 -9.64409 -9.20980 -8.97433 -8.83453 -8.71328 -6.87174 -5.73135 -3.01099 0.19330 0.97147 1.54652 1.97363 2.92233 3.00109 3.45658 3.51306 3.53542 3.98501 4.02689 4.46434 4.48256 4.61077 4.66959 4.78726 4.84876 4.96388 5.01040 5.06808 5.16126 5.24734 5.36773 5.42128 5.51825 5.54627 5.58961 5.59761 5.64056 5.64553 5.69374 5.88470 5.88980 5.93612 5.98655 6.12733 6.17623 6.29920 6.32835 6.48320 6.57740 6.68500 6.84111 6.97343 7.28406 7.73998 7.98618 8.46219 9.57385 10.16485 10.51224 11.49958 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.042393 B = 0.001763 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.333524 B =15880.694059 C =16091.706463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.095 4.095 12 H 0.074 0.926 13 C -0.110 4.110 14 C -0.134 4.134 15 C 0.140 3.860 16 H 0.097 0.903 17 N -0.717 5.717 18 C 0.591 3.409 19 O -0.527 6.527 20 C -0.263 4.263 21 C -0.038 4.038 22 C -0.138 4.138 23 C -0.222 4.222 24 S 0.217 5.783 25 C -0.045 4.045 26 C -0.119 4.119 27 C -0.058 4.058 28 C -0.121 4.121 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.020 0.980 32 H 0.017 0.983 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.395 0.605 38 H 0.151 0.849 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 -34.207 -0.123 34.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.093 0.907 13 C -0.148 4.148 14 C -0.172 4.172 15 C 0.036 3.964 16 H 0.115 0.885 17 N -0.367 5.367 18 C 0.377 3.623 19 O -0.404 6.404 20 C -0.383 4.383 21 C -0.071 4.071 22 C -0.151 4.151 23 C -0.341 4.341 24 S 0.486 5.514 25 C -0.084 4.084 26 C -0.157 4.157 27 C -0.097 4.097 28 C -0.159 4.159 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.230 0.770 38 H 0.169 0.831 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.372 -33.128 -0.779 33.140 hybrid contribution 0.270 0.243 0.912 0.982 sum 0.642 -32.886 0.133 32.892 Atomic orbital electron populations 1.69670 1.05085 1.25444 1.58080 1.24733 0.95526 0.97660 1.03216 0.86123 0.78784 0.84192 0.77146 1.20592 1.21934 1.21900 1.19295 0.91069 0.84256 1.42229 0.91191 1.42357 1.05893 0.99960 1.89389 1.20793 0.93046 0.85371 0.97662 1.21876 0.97613 0.93637 0.98326 0.90726 1.22313 1.00946 0.94157 0.97400 1.22900 0.96406 0.96555 1.01374 1.22034 0.98605 0.77441 0.98270 0.88537 1.46004 1.72857 1.07118 1.10767 1.16882 0.76803 0.83364 0.85253 1.90845 1.48628 1.80661 1.20312 1.24282 1.18264 0.97632 0.98139 1.20225 0.96632 0.89307 1.00906 1.20399 1.05259 0.95677 0.93786 1.25665 1.08056 1.00796 0.99604 1.82788 1.66664 0.94430 1.07472 1.20886 1.02445 0.86811 0.98248 1.22292 1.01325 0.98421 0.93686 1.21005 1.01409 0.88411 0.98874 1.22439 1.01502 0.95954 0.96042 0.93633 0.78253 0.96215 0.96544 0.91158 0.90771 0.91327 0.91570 0.77018 0.83131 0.90401 0.89693 0.90549 0.89929 0.90131 0.90515 0.91590 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.69 5.43 -59.91 -0.33 -19.02 16 10 C 0.16 3.20 5.32 -4.05 -0.02 3.18 16 11 C -0.10 -1.51 2.98 -89.50 -0.27 -1.78 16 12 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 13 C -0.11 -1.74 6.01 -25.07 -0.15 -1.89 16 14 C -0.13 -1.81 6.56 -24.74 -0.16 -1.98 16 15 C 0.14 1.80 3.17 -66.16 -0.21 1.59 16 16 H 0.10 1.40 7.67 -51.93 -0.40 1.00 16 17 N -0.72 -8.11 5.18 -53.43 -0.28 -8.39 16 18 C 0.59 7.73 7.78 -12.89 -0.10 7.63 16 19 O -0.53 -8.76 16.54 5.19 0.09 -8.68 16 20 C -0.26 -2.85 6.41 -37.06 -0.24 -3.08 16 21 C -0.04 -0.39 9.99 -40.08 -0.40 -0.79 16 22 C -0.14 -1.17 6.49 -104.59 -0.68 -1.85 16 23 C -0.22 -1.73 7.10 -34.85 -0.25 -1.97 16 24 S 0.22 1.73 22.15 -107.50 -2.38 -0.65 16 25 C -0.04 -0.23 6.80 -26.45 -0.18 -0.41 16 26 C -0.12 -0.49 7.11 -25.56 -0.18 -0.67 16 27 C -0.06 -0.33 6.81 -26.26 -0.18 -0.51 16 28 C -0.12 -1.51 6.20 -25.51 -0.16 -1.67 16 29 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.38 10.25 7.51 -40.82 -0.31 9.94 16 31 H 0.02 0.41 8.04 -51.93 -0.42 -0.01 16 32 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.29 7.79 -51.93 -0.40 0.89 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.40 3.52 7.44 -40.82 -0.30 3.22 16 38 H 0.15 1.52 8.04 -52.49 -0.42 1.10 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.70 7.71 -51.93 -0.40 0.29 16 46 H 0.08 0.94 7.67 -51.93 -0.40 0.54 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -33.42 385.03 -12.06 -45.49 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -7.25 Total: 7.20 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.42 Total: -11.64 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.12 Total: -55.23 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.38 Total: -0.65 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.42 -12.06 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284242844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.179 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds