Wall clock time and date at job start Tue Mar 31 2020 18:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00179 * 2 1 4 4 H 1.48500 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47109 * 300.00037 * 3 2 1 6 6 H 1.48504 * 109.47424 * 59.99882 * 3 2 1 7 7 C 1.38811 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00021 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00136 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00034 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47150 * 180.02562 * 10 9 7 12 12 H 1.08995 * 110.02130 * 54.93681 * 11 10 9 13 13 C 1.54265 * 110.03213 * 293.54400 * 11 10 9 14 14 C 1.54887 * 104.20056 * 217.05730 * 13 11 10 15 15 C 1.54890 * 102.91108 * 37.84875 * 14 13 11 16 16 H 1.09003 * 110.48855 * 80.83451 * 15 14 13 17 17 N 1.46505 * 110.48380 * 203.47245 * 15 14 13 18 18 C 1.34778 * 119.99736 * 273.54592 * 17 15 14 19 19 O 1.21695 * 120.00365 * 0.02562 * 18 17 15 20 20 C 1.46584 * 119.99463 * 179.97438 * 18 17 15 21 21 C 1.35877 * 125.41400 * 180.02562 * 20 18 17 22 22 C 1.39169 * 114.00004 * 179.97438 * 21 20 18 23 23 C 1.34367 * 113.99914 * 359.97438 * 22 21 20 24 24 S 1.71487 * 111.07534 * 359.78798 * 23 22 21 25 25 C 1.52363 * 110.38874 * 180.02562 * 23 22 21 26 26 C 1.54161 * 104.90380 * 17.54193 * 25 23 22 27 27 C 1.52815 * 136.19162 * 179.97438 * 22 21 20 28 28 C 1.53877 * 110.07490 * 176.35509 * 11 10 9 29 29 H 0.96996 * 120.00058 * 359.97438 * 1 2 3 30 30 H 0.96994 * 119.99759 * 0.02562 * 9 7 2 31 31 H 1.08999 * 109.47176 * 59.99913 * 10 9 7 32 32 H 1.09012 * 109.47372 * 300.00517 * 10 9 7 33 33 H 1.09004 * 110.48891 * 98.37703 * 13 11 10 34 34 H 1.09004 * 110.59809 * 335.79343 * 13 11 10 35 35 H 1.09002 * 110.75856 * 156.25785 * 14 13 11 36 36 H 1.09006 * 110.75640 * 279.44771 * 14 13 11 37 37 H 0.96995 * 120.00041 * 93.54691 * 17 15 14 38 38 H 1.07996 * 123.00219 * 359.94079 * 21 20 18 39 39 H 1.09005 * 110.35803 * 136.40061 * 25 23 22 40 40 H 1.09005 * 110.35416 * 258.68639 * 25 23 22 41 41 H 1.08998 * 110.96054 * 91.40570 * 26 25 23 42 42 H 1.09000 * 110.96036 * 215.14881 * 26 25 23 43 43 H 1.09001 * 110.33847 * 281.26731 * 27 22 21 44 44 H 1.09006 * 110.32863 * 43.49188 * 27 22 21 45 45 H 1.08999 * 110.03493 * 238.58864 * 28 11 10 46 46 H 1.09003 * 110.03187 * 359.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 1 0.3745 -4.7208 -0.8397 13 6 0.2799 -4.8454 1.3272 14 6 0.1104 -6.3531 1.6392 15 6 1.4621 -6.9553 1.1817 16 1 2.2242 -6.8073 1.9468 17 7 1.3112 -8.3800 0.8754 18 6 1.4279 -9.2963 1.8569 19 8 1.6581 -8.9402 2.9976 20 6 1.2763 -10.7217 1.5504 21 6 1.3712 -11.7350 2.4507 22 6 1.1857 -12.9999 1.9008 23 6 0.9457 -12.9913 0.5788 24 16 0.9359 -11.3903 -0.0357 25 6 0.7555 -14.4128 0.0645 26 6 0.4700 -15.2551 1.3237 27 6 1.1829 -14.4378 2.4183 28 6 1.8170 -6.1584 -0.0931 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 -0.0005 31 1 2.6847 -3.7145 0.8894 32 1 2.6849 -3.7145 -0.8906 33 1 -0.6931 -4.3694 1.2053 34 1 0.8478 -4.3539 2.1172 35 1 -0.0417 -6.5119 2.7068 36 1 -0.7146 -6.7758 1.0658 37 1 1.1273 -8.6638 -0.0337 38 1 1.5731 -11.5733 3.4992 39 1 -0.0904 -14.4579 -0.6216 40 1 1.6630 -14.7625 -0.4278 41 1 -0.6008 -15.3155 1.5180 42 1 0.9053 -16.2504 1.2340 43 1 2.2042 -14.7944 2.5519 44 1 0.6329 -14.5012 3.3572 45 1 1.4932 -6.7092 -0.9762 46 1 2.8914 -5.9801 -0.1377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284242844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:16 Heat of formation + Delta-G solvation = -27.255316 kcal Electronic energy + Delta-G solvation = -25107.081504 eV Core-core repulsion = 21507.624672 eV Total energy + Delta-G solvation = -3599.456831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20543 -40.29610 -39.21581 -36.49577 -35.34972 -34.90126 -32.95361 -30.23856 -29.91238 -29.36246 -28.39018 -26.26091 -24.63082 -23.93672 -22.77990 -21.68219 -21.47908 -20.80900 -19.66366 -19.08827 -18.98712 -17.52266 -17.18248 -16.68947 -16.59626 -16.27040 -15.89865 -15.78225 -15.34637 -15.16710 -15.01224 -14.64210 -14.32429 -13.82332 -13.72412 -13.61548 -13.33506 -13.23982 -12.97358 -12.89358 -12.82627 -12.69299 -12.48520 -12.13754 -12.10648 -12.05449 -11.92490 -11.80160 -11.75373 -11.71216 -11.59204 -11.38081 -11.22263 -10.92117 -10.24329 -9.66393 -9.32373 -8.97898 -7.94946 -5.23039 -0.54285 0.31548 0.87913 1.25293 1.46948 1.47788 1.57914 1.97121 2.07023 2.56244 3.38506 3.42325 3.53904 3.56420 3.61640 3.83771 3.87454 4.14578 4.15633 4.18457 4.36133 4.37441 4.44859 4.47713 4.58463 4.63120 4.64501 4.74757 4.80696 4.81797 4.88247 4.90889 4.96897 5.03272 5.05233 5.11184 5.15919 5.22492 5.24416 5.35559 5.37300 5.37970 5.45882 5.48743 5.54914 6.28025 6.36071 7.02960 7.34290 8.11639 8.34973 9.28853 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.042393 B = 0.001763 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.333524 B =15880.694059 C =16091.706463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.245 4.245 8 H 0.074 0.926 9 N -0.744 5.744 10 C 0.156 3.844 11 C -0.086 4.086 12 H 0.076 0.924 13 C -0.108 4.108 14 C -0.123 4.123 15 C 0.146 3.854 16 H 0.078 0.922 17 N -0.704 5.704 18 C 0.590 3.410 19 O -0.573 6.573 20 C -0.297 4.297 21 C -0.045 4.045 22 C -0.158 4.158 23 C -0.220 4.220 24 S 0.259 5.741 25 C -0.047 4.047 26 C -0.113 4.113 27 C -0.060 4.060 28 C -0.108 4.108 29 H 0.251 0.749 30 H 0.375 0.625 31 H 0.016 0.984 32 H 0.023 0.977 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.410 0.590 38 H 0.140 0.860 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.097 0.903 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 -36.708 -1.871 36.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.377 4.377 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.030 3.970 11 C -0.105 4.105 12 H 0.095 0.905 13 C -0.146 4.146 14 C -0.162 4.162 15 C 0.042 3.958 16 H 0.096 0.904 17 N -0.355 5.355 18 C 0.378 3.622 19 O -0.454 6.454 20 C -0.417 4.417 21 C -0.079 4.079 22 C -0.170 4.170 23 C -0.340 4.340 24 S 0.529 5.471 25 C -0.086 4.086 26 C -0.151 4.151 27 C -0.099 4.099 28 C -0.147 4.147 29 H 0.060 0.940 30 H 0.207 0.793 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.247 0.753 38 H 0.157 0.843 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.852 -35.668 -2.566 35.771 hybrid contribution 0.142 0.919 1.449 1.722 sum 0.994 -34.749 -1.116 34.781 Atomic orbital electron populations 1.69821 1.06561 1.25948 1.59664 1.25560 0.96430 1.01069 1.03819 0.85075 0.78200 0.79821 0.76676 1.19135 1.21875 1.22126 1.19695 0.91507 0.85539 1.40959 0.90797 1.42563 1.05689 1.01135 1.89273 1.20976 0.93791 0.84836 0.97398 1.21764 0.96883 0.93742 0.98151 0.90539 1.22214 1.00003 0.95533 0.96881 1.22793 0.97479 0.94879 1.01016 1.21809 0.97544 0.78410 0.98068 0.90401 1.45815 1.72217 1.06180 1.11298 1.17209 0.75829 0.84457 0.84720 1.90814 1.50867 1.81613 1.22147 1.24133 1.20634 0.96457 1.00427 1.20362 0.96543 0.90404 1.00623 1.20654 1.05744 0.96196 0.94388 1.26222 1.06136 1.02037 0.99614 1.82525 1.65569 0.94174 1.04823 1.21078 1.03674 0.84861 0.98954 1.22329 1.01491 0.98988 0.92326 1.21123 1.02227 0.86915 0.99609 1.22334 1.01377 0.94033 0.96929 0.94037 0.79326 0.96648 0.95940 0.92222 0.93058 0.92436 0.89957 0.75293 0.84256 0.89073 0.88267 0.90295 0.87779 0.89404 0.90302 0.88471 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 3 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 8 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -38.43 5.43 -343.44 -1.87 -40.30 16 10 C 0.16 6.27 5.32 86.38 0.46 6.73 16 11 C -0.09 -2.67 2.98 -10.07 -0.03 -2.70 16 12 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.11 -3.48 6.01 31.67 0.19 -3.29 16 14 C -0.12 -3.32 6.56 31.88 0.21 -3.11 16 15 C 0.15 3.66 3.17 46.13 0.15 3.81 16 16 H 0.08 2.29 7.67 -2.39 -0.02 2.27 16 17 N -0.70 -15.19 5.18 -441.16 -2.29 -17.48 16 18 C 0.59 15.55 7.78 86.42 0.67 16.22 16 19 O -0.57 -19.90 16.54 -4.33 -0.07 -19.97 16 20 C -0.30 -6.33 6.41 23.90 0.15 -6.18 16 21 C -0.05 -0.94 9.99 21.95 0.22 -0.72 16 22 C -0.16 -2.48 6.49 -19.84 -0.13 -2.61 16 23 C -0.22 -2.94 7.10 25.34 0.18 -2.76 16 24 S 0.26 3.61 22.15 -56.49 -1.25 2.35 16 25 C -0.05 -0.32 6.80 30.78 0.21 -0.11 16 26 C -0.11 -0.59 7.11 31.35 0.22 -0.37 16 27 C -0.06 -0.57 6.81 30.90 0.21 -0.36 16 28 C -0.11 -2.50 6.20 31.39 0.19 -2.31 16 29 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.37 20.46 7.51 -92.71 -0.70 19.76 16 31 H 0.02 0.64 8.04 -2.39 -0.02 0.62 16 32 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.05 1.87 7.79 -2.38 -0.02 1.85 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.41 6.38 7.44 -92.71 -0.69 5.69 16 38 H 0.14 3.05 8.04 -2.91 -0.02 3.03 16 39 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 45 H 0.10 1.70 7.71 -2.39 -0.02 1.68 16 46 H 0.08 1.84 7.67 -2.39 -0.02 1.83 16 Total: -1.00 -73.43 385.03 0.66 -72.76 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.39 Total: 28.42 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 4.21 Total: -14.92 kcal Atomic # 7 Polarization: -113.78 SS G_CDS: -3.87 Total: -117.64 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.07 Total: -19.97 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.25 Total: 2.35 kcal Total: -73.43 0.66 -72.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284242844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.509 kcal (2) G-P(sol) polarization free energy of solvation -73.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds