Wall clock time and date at job start Tue Mar 31 2020 17:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 116.99930 * 2 1 4 4 O 1.20829 * 120.00197 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99909 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.46816 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46950 * 179.97438 * 6 5 3 8 8 C 1.36937 * 120.00383 * 275.36087 * 7 6 5 9 9 H 1.07998 * 119.99985 * 37.72586 * 8 7 6 10 10 C 1.38815 * 119.99743 * 217.73611 * 8 7 6 11 11 N 1.31620 * 120.00033 * 21.10194 * 10 8 7 12 12 Si 1.86798 * 119.99600 * 201.10419 * 10 8 7 13 13 H 1.48498 * 109.47396 * 59.99848 * 12 10 8 14 14 H 1.48500 * 109.46953 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47052 * 299.99607 * 12 10 8 16 16 C 1.46499 * 119.99746 * 95.35763 * 7 6 5 17 17 C 1.50703 * 109.47401 * 270.00161 * 16 7 6 18 18 N 1.30066 * 124.97774 * 274.97559 * 17 16 7 19 19 C 1.35753 * 109.49418 * 180.02562 * 18 17 16 20 20 C 1.39966 * 133.78038 * 179.97438 * 19 18 17 21 21 C 1.36956 * 118.35260 * 179.75936 * 20 19 18 22 22 C 1.39268 * 119.65305 * 0.24506 * 21 20 19 23 23 O 1.35691 * 119.39025 * 180.02562 * 22 21 20 24 24 C 1.42900 * 116.99903 * 180.02562 * 23 22 21 25 25 N 1.32082 * 121.21515 * 0.02945 * 22 21 20 26 26 C 1.32507 * 121.36388 * 359.97438 * 25 22 21 27 27 N 1.36215 * 124.97626 * 95.64766 * 17 16 7 28 28 H 0.97006 * 126.28421 * 359.37945 * 27 17 16 29 29 H 1.08999 * 109.47075 * 299.99379 * 1 2 3 30 30 H 1.08995 * 109.47594 * 59.99914 * 1 2 3 31 31 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47050 * 60.01004 * 5 3 2 33 33 H 1.08996 * 109.47242 * 300.00486 * 5 3 2 34 34 H 1.09008 * 109.46967 * 60.00601 * 6 5 3 35 35 H 1.08996 * 109.47484 * 300.00181 * 6 5 3 36 36 H 0.97003 * 119.99396 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.47655 * 149.99995 * 16 7 6 38 38 H 1.09008 * 109.46959 * 29.99946 * 16 7 6 39 39 H 1.07994 * 120.82272 * 0.02770 * 20 19 18 40 40 H 1.07995 * 120.17353 * 180.27603 * 21 20 19 41 41 H 1.08997 * 109.47368 * 300.00260 * 24 23 22 42 42 H 1.09005 * 109.47047 * 60.00459 * 24 23 22 43 43 H 1.08998 * 109.47121 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 0.0002 8 6 6.1527 2.7434 1.1809 9 1 5.8165 2.0764 1.9609 10 6 7.2837 3.5244 1.3751 11 7 7.4683 4.6072 0.6499 12 14 8.5438 3.0385 2.6656 13 1 9.0869 1.6939 2.3457 14 1 9.6500 4.0292 2.6749 15 1 7.8966 3.0060 4.0017 16 6 6.1883 2.9761 -1.2629 17 6 6.5111 1.6174 -1.8295 18 7 7.5500 0.9036 -1.5091 19 6 7.5315 -0.2614 -2.2057 20 6 8.3797 -1.3737 -2.2553 21 6 8.0485 -2.4075 -3.0902 22 6 6.8932 -2.3256 -3.8636 23 8 6.5698 -3.3532 -4.6886 24 6 5.3741 -3.2151 -5.4589 25 7 6.1065 -1.2660 -3.8087 26 6 6.3846 -0.2408 -3.0166 27 7 5.7643 0.9628 -2.7618 28 1 4.9409 1.2806 -3.1642 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9557 0.7810 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 3.6107 3.2356 0.8908 35 1 3.6100 3.2368 -0.8892 36 1 8.2589 5.1527 0.7854 37 1 7.1133 3.5246 -1.0850 38 1 5.5695 3.5274 -1.9710 39 1 9.2710 -1.4175 -1.6469 40 1 8.6796 -3.2819 -3.1483 41 1 4.5221 -3.0978 -4.7893 42 1 5.4549 -2.3381 -6.1012 43 1 5.2331 -4.1042 -6.0734 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308012734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:25 Heat of formation + Delta-G solvation = -12.263290 kcal Electronic energy + Delta-G solvation = -28996.016256 eV Core-core repulsion = 24850.916313 eV Total energy + Delta-G solvation = -4145.099943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87963 -40.23367 -39.51131 -36.96957 -36.47596 -35.69637 -33.27463 -32.25871 -30.94328 -30.67138 -29.20262 -27.84769 -27.29153 -25.86028 -24.54909 -22.96112 -22.36744 -21.53159 -20.40903 -20.04364 -18.49986 -17.82510 -17.47236 -16.94834 -16.66376 -16.33565 -16.28394 -16.05204 -15.25152 -14.91216 -14.83919 -14.17263 -14.02679 -13.78309 -13.68203 -13.32179 -13.17774 -12.99493 -12.79514 -12.40890 -12.26477 -12.12852 -11.90687 -11.54381 -11.32224 -10.90465 -10.81282 -10.76360 -10.73412 -10.66796 -10.54079 -10.40991 -10.23293 -10.18492 -10.04061 -8.92975 -8.63661 -8.61595 -7.63566 -6.92880 -5.99719 -3.57471 1.17087 1.54597 2.42796 2.79345 2.90213 3.25636 3.31058 3.39281 3.43499 3.50593 4.10024 4.41441 4.49648 4.75384 5.00237 5.08194 5.09203 5.14516 5.14925 5.24035 5.26090 5.30136 5.39345 5.43531 5.48503 5.52560 5.57097 5.67397 5.85557 6.01060 6.07067 6.11888 6.37216 6.40677 6.44849 6.54009 6.70502 6.79826 7.20703 7.29627 7.58696 7.69529 7.94848 8.05040 8.27667 8.48518 8.92219 9.56719 10.07502 11.04864 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.007424 B = 0.005065 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.473748 B = 5526.961951 C = 8427.341816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.510 6.510 5 C -0.135 4.135 6 C 0.157 3.843 7 N -0.560 5.560 8 C -0.272 4.272 9 H 0.063 0.937 10 C 0.032 3.968 11 N -0.882 5.882 12 Si 0.904 3.096 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.282 1.282 16 C 0.206 3.794 17 C 0.302 3.698 18 N -0.466 5.466 19 C -0.017 4.017 20 C 0.004 3.996 21 C -0.195 4.195 22 C 0.337 3.663 23 O -0.309 6.309 24 C 0.042 3.958 25 N -0.542 5.542 26 C 0.262 3.738 27 N -0.593 5.593 28 H 0.418 0.582 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.261 0.739 37 H 0.136 0.864 38 H 0.055 0.945 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.019 -11.387 -8.675 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.306 3.694 4 O -0.398 6.398 5 C -0.176 4.176 6 C 0.030 3.970 7 N -0.277 5.277 8 C -0.400 4.400 9 H 0.081 0.919 10 C -0.170 4.170 11 N -0.522 5.522 12 Si 0.732 3.268 13 H -0.201 1.201 14 H -0.215 1.215 15 H -0.208 1.208 16 C 0.076 3.924 17 C 0.032 3.968 18 N -0.185 5.185 19 C -0.139 4.139 20 C -0.022 4.022 21 C -0.218 4.218 22 C 0.148 3.852 23 O -0.215 6.215 24 C -0.053 4.053 25 N -0.273 5.273 26 C 0.025 3.975 27 N -0.208 5.208 28 H 0.257 0.743 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.153 0.847 38 H 0.073 0.927 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.040 -10.866 -8.576 15.103 hybrid contribution -0.234 -0.525 0.146 0.593 sum -6.274 -11.391 -8.430 15.498 Atomic orbital electron populations 1.23185 0.77256 1.03177 1.02316 1.86575 1.22862 1.34485 1.84383 1.24318 0.92609 0.80884 0.71563 1.90635 1.67408 1.36242 1.45512 1.22372 0.85077 1.05016 1.05112 1.20791 0.85052 0.89620 1.01506 1.43725 0.99037 1.82891 1.02065 1.18867 1.08962 1.18986 0.93234 0.91892 1.25117 1.00174 0.93774 0.97910 1.69901 1.27947 1.12279 1.42087 0.86366 0.80992 0.78547 0.80861 1.20126 1.21491 1.20786 1.20025 1.02039 0.84214 0.86098 1.26424 0.85864 0.98756 0.85729 1.70648 1.21225 1.02482 1.24168 1.19831 0.96883 0.96867 1.00270 1.20258 0.97636 0.89194 0.95144 1.20444 0.98304 1.01847 1.01202 1.19256 0.90294 0.85452 0.90152 1.86241 1.43716 1.38018 1.53530 1.22770 0.85535 1.02384 0.94658 1.65713 1.34353 1.01331 1.25875 1.18405 0.94022 0.88191 0.96850 1.43282 1.25136 1.14392 1.38014 0.74319 0.92050 0.92195 0.88586 0.89462 0.87773 0.91430 0.93215 0.92931 0.84679 0.92697 0.83679 0.83834 0.92518 0.92573 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -5.43 10.57 -39.24 -0.41 -5.84 16 3 C 0.46 7.65 7.96 36.01 0.29 7.93 16 4 O -0.51 -9.37 15.73 -18.75 -0.29 -9.66 16 5 C -0.14 -2.31 6.11 -27.88 -0.17 -2.48 16 6 C 0.16 3.03 5.01 -4.04 -0.02 3.01 16 7 N -0.56 -12.37 2.42 -174.60 -0.42 -12.79 16 8 C -0.27 -6.81 9.45 -15.06 -0.14 -6.95 16 9 H 0.06 1.60 7.91 -52.49 -0.42 1.18 16 10 C 0.03 0.83 4.96 -17.43 -0.09 0.74 16 11 N -0.88 -23.33 11.46 55.49 0.64 -22.69 16 12 Si 0.90 20.98 29.60 -169.99 -5.03 15.94 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C 0.21 4.27 5.95 -5.19 -0.03 4.24 16 17 C 0.30 5.92 7.46 -154.69 -1.15 4.77 16 18 N -0.47 -10.02 11.28 -8.16 -0.09 -10.11 16 19 C -0.02 -0.33 7.24 -84.64 -0.61 -0.94 16 20 C 0.00 0.07 10.16 -39.40 -0.40 -0.33 16 21 C -0.19 -2.70 9.96 -39.66 -0.40 -3.10 16 22 C 0.34 5.10 7.49 -17.06 -0.13 4.98 16 23 O -0.31 -4.09 10.47 -18.78 -0.20 -4.29 16 24 C 0.04 0.43 10.37 101.05 1.05 1.48 16 25 N -0.54 -8.99 9.22 -12.35 -0.11 -9.11 16 26 C 0.26 4.68 8.45 -155.60 -1.32 3.37 16 27 N -0.59 -9.94 5.63 -9.47 -0.05 -10.00 16 28 H 0.42 5.82 8.96 -40.82 -0.37 5.46 16 29 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 30 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.47 7.34 -51.93 -0.38 1.09 16 33 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.07 1.40 8.04 -51.92 -0.42 0.98 16 35 H 0.05 0.90 7.79 -51.93 -0.40 0.49 16 36 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 37 H 0.14 3.26 5.52 -51.93 -0.29 2.97 16 38 H 0.05 0.99 7.86 -51.92 -0.41 0.58 16 39 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 40 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 42 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -30.67 373.57 -8.02 -38.69 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.61 Total: 6.08 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: -2.05 Total: 18.15 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -0.05 Total: -64.70 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.91 Total: -19.79 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.67 -8.02 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308012734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.427 kcal (2) G-P(sol) polarization free energy of solvation -30.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds