Wall clock time and date at job start Tue Mar 31 2020 17:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 116.99930 * 2 1 4 4 O 1.20829 * 120.00197 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99909 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.46816 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46950 * 179.97438 * 6 5 3 8 8 C 1.36937 * 120.00383 * 275.36087 * 7 6 5 9 9 H 1.07998 * 119.99985 * 37.72586 * 8 7 6 10 10 C 1.38815 * 119.99743 * 217.73611 * 8 7 6 11 11 N 1.31620 * 120.00033 * 21.10194 * 10 8 7 12 12 Si 1.86798 * 119.99600 * 201.10419 * 10 8 7 13 13 H 1.48498 * 109.47396 * 59.99848 * 12 10 8 14 14 H 1.48500 * 109.46953 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47052 * 299.99607 * 12 10 8 16 16 C 1.46499 * 119.99746 * 95.35763 * 7 6 5 17 17 C 1.50703 * 109.47401 * 270.00161 * 16 7 6 18 18 N 1.30066 * 124.97774 * 274.97559 * 17 16 7 19 19 C 1.35753 * 109.49418 * 180.02562 * 18 17 16 20 20 C 1.39966 * 133.78038 * 179.97438 * 19 18 17 21 21 C 1.36956 * 118.35260 * 179.75936 * 20 19 18 22 22 C 1.39268 * 119.65305 * 0.24506 * 21 20 19 23 23 O 1.35691 * 119.39025 * 180.02562 * 22 21 20 24 24 C 1.42900 * 116.99903 * 180.02562 * 23 22 21 25 25 N 1.32082 * 121.21515 * 0.02945 * 22 21 20 26 26 C 1.32507 * 121.36388 * 359.97438 * 25 22 21 27 27 N 1.36215 * 124.97626 * 95.64766 * 17 16 7 28 28 H 0.97006 * 126.28421 * 359.37945 * 27 17 16 29 29 H 1.08999 * 109.47075 * 299.99379 * 1 2 3 30 30 H 1.08995 * 109.47594 * 59.99914 * 1 2 3 31 31 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47050 * 60.01004 * 5 3 2 33 33 H 1.08996 * 109.47242 * 300.00486 * 5 3 2 34 34 H 1.09008 * 109.46967 * 60.00601 * 6 5 3 35 35 H 1.08996 * 109.47484 * 300.00181 * 6 5 3 36 36 H 0.97003 * 119.99396 * 180.02562 * 11 10 8 37 37 H 1.08997 * 109.47655 * 149.99995 * 16 7 6 38 38 H 1.09008 * 109.46959 * 29.99946 * 16 7 6 39 39 H 1.07994 * 120.82272 * 0.02770 * 20 19 18 40 40 H 1.07995 * 120.17353 * 180.27603 * 21 20 19 41 41 H 1.08997 * 109.47368 * 300.00260 * 24 23 22 42 42 H 1.09005 * 109.47047 * 60.00459 * 24 23 22 43 43 H 1.08998 * 109.47121 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 0.0002 8 6 6.1527 2.7434 1.1809 9 1 5.8165 2.0764 1.9609 10 6 7.2837 3.5244 1.3751 11 7 7.4683 4.6072 0.6499 12 14 8.5438 3.0385 2.6656 13 1 9.0869 1.6939 2.3457 14 1 9.6500 4.0292 2.6749 15 1 7.8966 3.0060 4.0017 16 6 6.1883 2.9761 -1.2629 17 6 6.5111 1.6174 -1.8295 18 7 7.5500 0.9036 -1.5091 19 6 7.5315 -0.2614 -2.2057 20 6 8.3797 -1.3737 -2.2553 21 6 8.0485 -2.4075 -3.0902 22 6 6.8932 -2.3256 -3.8636 23 8 6.5698 -3.3532 -4.6886 24 6 5.3741 -3.2151 -5.4589 25 7 6.1065 -1.2660 -3.8087 26 6 6.3846 -0.2408 -3.0166 27 7 5.7643 0.9628 -2.7618 28 1 4.9409 1.2806 -3.1642 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9557 0.7810 -0.8909 33 1 3.9564 0.7805 0.8891 34 1 3.6107 3.2356 0.8908 35 1 3.6100 3.2368 -0.8892 36 1 8.2589 5.1527 0.7854 37 1 7.1133 3.5246 -1.0850 38 1 5.5695 3.5274 -1.9710 39 1 9.2710 -1.4175 -1.6469 40 1 8.6796 -3.2819 -3.1483 41 1 4.5221 -3.0978 -4.7893 42 1 5.4549 -2.3381 -6.1012 43 1 5.2331 -4.1042 -6.0734 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308012734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:24 Heat of formation + Delta-G solvation = -31.640378 kcal Electronic energy + Delta-G solvation = -28996.856510 eV Core-core repulsion = 24850.916313 eV Total energy + Delta-G solvation = -4145.940196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.22702 -41.51619 -40.67012 -38.32309 -37.71433 -37.19581 -34.59757 -33.99589 -32.26656 -32.22561 -30.54312 -28.94568 -28.47867 -27.23428 -26.10020 -24.22258 -23.68083 -23.00762 -21.80475 -21.53064 -19.73178 -19.19747 -18.83012 -18.37421 -18.05471 -17.62007 -17.55568 -17.17812 -16.66942 -16.36277 -16.23659 -15.63721 -15.38894 -15.20701 -14.93880 -14.76009 -14.38877 -14.26537 -14.08416 -13.74243 -13.54832 -13.28888 -13.11596 -12.84875 -12.74976 -12.70394 -12.54446 -12.26578 -12.10640 -12.04596 -11.90839 -11.81615 -11.79419 -11.61530 -11.56612 -10.54070 -10.27597 -9.90068 -8.97054 -8.74163 -7.91439 -5.51015 -0.09884 0.31434 1.10798 1.46573 1.52872 1.55946 1.61461 1.71309 1.89522 2.20971 2.54991 2.81433 3.17793 3.32074 3.51069 3.59672 3.80444 3.90597 4.05806 4.09014 4.17496 4.27438 4.30330 4.32323 4.44608 4.48770 4.51664 4.56538 4.65181 4.66903 4.74808 4.86472 4.91012 5.09298 5.17219 5.20822 5.33310 5.45534 5.49742 5.70872 6.09192 6.30945 6.44151 6.67979 6.79827 7.03758 7.08421 7.71736 8.21691 9.10154 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.007424 B = 0.005065 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3770.473748 B = 5526.961951 C = 8427.341816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.472 3.528 4 O -0.531 6.531 5 C -0.121 4.121 6 C 0.162 3.838 7 N -0.572 5.572 8 C -0.272 4.272 9 H 0.054 0.946 10 C -0.007 4.007 11 N -0.905 5.905 12 Si 0.949 3.051 13 H -0.285 1.285 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.213 3.787 17 C 0.295 3.705 18 N -0.503 5.503 19 C -0.053 4.053 20 C 0.001 3.999 21 C -0.180 4.180 22 C 0.337 3.663 23 O -0.307 6.307 24 C 0.037 3.963 25 N -0.551 5.551 26 C 0.254 3.746 27 N -0.577 5.577 28 H 0.430 0.570 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.131 0.869 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.048 0.952 35 H 0.063 0.937 36 H 0.256 0.744 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.163 0.837 40 H 0.181 0.819 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.784 -14.015 -9.935 18.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.316 3.684 4 O -0.421 6.421 5 C -0.162 4.162 6 C 0.036 3.964 7 N -0.291 5.291 8 C -0.402 4.402 9 H 0.072 0.928 10 C -0.206 4.206 11 N -0.547 5.547 12 Si 0.777 3.223 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.202 1.202 16 C 0.084 3.916 17 C 0.025 3.975 18 N -0.223 5.223 19 C -0.173 4.173 20 C -0.025 4.025 21 C -0.203 4.203 22 C 0.149 3.851 23 O -0.213 6.213 24 C -0.058 4.058 25 N -0.282 5.282 26 C 0.019 3.981 27 N -0.194 5.194 28 H 0.271 0.729 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.149 0.851 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.181 0.819 40 H 0.199 0.801 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.845 -13.526 -9.857 18.082 hybrid contribution -0.084 0.066 0.389 0.404 sum -6.929 -13.460 -9.467 17.855 Atomic orbital electron populations 1.23558 0.74779 1.05636 1.02659 1.86539 1.25225 1.33135 1.83803 1.23968 0.92158 0.81150 0.71102 1.90631 1.67758 1.37026 1.46645 1.22036 0.86026 1.03201 1.04902 1.20722 0.83530 0.90992 1.01170 1.43775 1.00049 1.83455 1.01776 1.18958 1.09088 1.18016 0.94123 0.92804 1.25596 1.01510 0.94034 0.99492 1.69991 1.28141 1.13102 1.43450 0.85655 0.79466 0.77477 0.79673 1.21138 1.21603 1.20181 1.19726 1.00863 0.84879 0.86149 1.25753 0.86482 0.98316 0.86940 1.70526 1.22393 1.03948 1.25429 1.20240 0.98600 0.97294 1.01201 1.20597 0.97786 0.88575 0.95555 1.20825 0.97908 1.02183 0.99338 1.19683 0.90263 0.85272 0.89923 1.86267 1.44848 1.36975 1.53180 1.23039 0.84169 1.04145 0.94469 1.65761 1.35013 1.01486 1.25976 1.18460 0.93924 0.88607 0.97147 1.42985 1.25153 1.14000 1.37213 0.72878 0.91943 0.91697 0.85125 0.89003 0.88662 0.93324 0.91911 0.93420 0.87916 0.90429 0.81941 0.80138 0.92988 0.92850 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.35 10.57 -51.36 -0.54 -10.89 16 3 C 0.47 15.18 7.96 71.24 0.57 15.75 16 4 O -0.53 -19.11 15.73 21.95 0.35 -18.77 16 5 C -0.12 -4.12 6.11 29.85 0.18 -3.94 16 6 C 0.16 6.29 5.01 86.38 0.43 6.72 16 7 N -0.57 -25.78 2.42 -706.31 -1.71 -27.49 16 8 C -0.27 -13.98 9.45 84.03 0.79 -13.19 16 9 H 0.05 2.81 7.91 -2.91 -0.02 2.79 16 10 C -0.01 -0.37 4.96 84.86 0.42 0.05 16 11 N -0.90 -49.28 11.46 21.65 0.25 -49.03 16 12 Si 0.95 44.02 29.60 68.60 2.03 46.05 16 13 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 16 C 0.21 9.02 5.95 85.63 0.51 9.53 16 17 C 0.30 11.73 7.46 137.88 1.03 12.75 16 18 N -0.50 -21.94 11.28 -179.72 -2.03 -23.97 16 19 C -0.05 -1.98 7.24 39.50 0.29 -1.69 16 20 C 0.00 0.04 10.16 22.39 0.23 0.26 16 21 C -0.18 -4.45 9.96 22.22 0.22 -4.23 16 22 C 0.34 9.34 7.49 84.90 0.64 9.98 16 23 O -0.31 -7.12 10.47 -90.10 -0.94 -8.07 16 24 C 0.04 0.64 10.37 113.37 1.18 1.82 16 25 N -0.55 -17.30 9.22 -305.94 -2.82 -20.12 16 26 C 0.25 8.88 8.45 133.78 1.13 10.01 16 27 N -0.58 -19.12 5.63 -183.87 -1.04 -20.16 16 28 H 0.43 11.62 8.96 -92.70 -0.83 10.79 16 29 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 31 H 0.13 1.64 8.14 -2.38 -0.02 1.62 16 32 H 0.09 3.05 7.34 -2.39 -0.02 3.03 16 33 H 0.10 3.42 8.14 -2.39 -0.02 3.41 16 34 H 0.05 2.05 8.04 -2.38 -0.02 2.03 16 35 H 0.06 2.25 7.79 -2.39 -0.02 2.23 16 36 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 37 H 0.10 5.14 5.52 -2.39 -0.01 5.13 16 38 H 0.08 2.82 7.86 -2.38 -0.02 2.81 16 39 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 40 H 0.18 3.07 8.06 -2.91 -0.02 3.04 16 41 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 42 H 0.05 0.98 8.10 -2.38 -0.02 0.96 16 43 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -67.20 373.57 2.58 -64.61 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.23 Total: 22.28 kcal Atomic # 6 Polarization: 36.74 SS G_CDS: 8.81 Total: 45.55 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -7.34 Total: -140.76 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -1.14 Total: -37.73 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.20 2.58 -64.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308012734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.971 kcal (2) G-P(sol) polarization free energy of solvation -67.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds