Wall clock time and date at job start Tue Mar 31 2020 17:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00044 * 2 1 4 4 C 1.50704 * 109.46703 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00291 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99742 * 179.97438 * 4 3 2 7 7 C 1.46494 * 119.99953 * 179.97438 * 6 4 3 8 8 C 1.53045 * 109.45996 * 205.00022 * 7 6 4 9 9 C 1.53192 * 109.31029 * 178.62980 * 8 7 6 10 10 N 1.46923 * 108.77662 * 54.63529 * 9 8 7 11 11 S 1.65606 * 120.62889 * 126.36777 * 10 9 8 12 12 O 1.42094 * 104.27817 * 333.92814 * 11 10 9 13 13 O 1.42106 * 104.27580 * 206.07045 * 11 10 9 14 14 C 1.81396 * 104.45103 * 90.00030 * 11 10 9 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 C 1.46931 * 118.74107 * 306.64334 * 10 9 8 25 25 C 1.52760 * 109.00482 * 53.30564 * 24 10 9 26 26 H 1.09002 * 109.47261 * 300.00962 * 1 2 3 27 27 H 1.08998 * 109.46866 * 60.00786 * 1 2 3 28 28 H 1.08995 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47634 * 59.99411 * 3 2 1 30 30 H 1.09002 * 109.46638 * 299.99014 * 3 2 1 31 31 H 0.97005 * 119.99606 * 359.97438 * 6 4 3 32 32 H 1.09002 * 109.46053 * 324.97699 * 7 6 4 33 33 H 1.08998 * 109.49463 * 58.67782 * 8 7 6 34 34 H 1.09001 * 109.49708 * 298.58199 * 8 7 6 35 35 H 1.09004 * 109.58820 * 294.84560 * 9 8 7 36 36 H 1.08997 * 109.70082 * 174.49376 * 9 8 7 37 37 H 1.09002 * 109.47134 * 59.99751 * 14 11 10 38 38 H 1.08998 * 109.46953 * 300.00489 * 14 11 10 39 39 H 1.09002 * 109.47153 * 59.99820 * 15 14 11 40 40 H 1.09001 * 109.46832 * 300.00011 * 15 14 11 41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.58620 * 173.14734 * 24 10 9 43 43 H 1.09000 * 109.58287 * 293.56713 * 24 10 9 44 44 H 1.09000 * 109.55779 * 185.55242 * 25 24 10 45 45 H 1.09003 * 109.35959 * 65.50545 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2766 2.2967 0.0002 7 6 5.7369 2.1809 0.0014 8 6 6.3481 3.4449 0.6106 9 6 7.8734 3.3059 0.6416 10 7 8.3479 2.9995 -0.7147 11 16 9.5229 3.9243 -1.4265 12 8 9.4012 5.1918 -0.7959 13 8 9.2906 3.7742 -2.8204 14 6 11.0794 3.1235 -0.9508 15 6 12.2550 3.8939 -1.5553 16 6 13.5481 3.2289 -1.1595 17 1 13.5330 2.3449 -0.5393 18 6 14.7505 3.7484 -1.5902 19 7 14.7688 4.8246 -2.3459 20 14 16.3533 2.9237 -1.1002 21 1 16.0619 1.7388 -0.2539 22 1 17.0815 2.4928 -2.3207 23 1 17.1908 3.8836 -0.3371 24 6 7.7559 1.8607 -1.4300 25 6 6.2359 2.0126 -1.4355 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8464 0.8898 30 1 1.6887 1.8462 -0.8901 31 1 3.8594 3.1724 -0.0009 32 1 6.0320 1.3138 0.5922 33 1 5.9741 3.5769 1.6259 34 1 6.0737 4.3094 0.0061 35 1 8.1530 2.4980 1.3178 36 1 8.3205 4.2394 0.9830 37 1 11.0885 2.0983 -1.3210 38 1 11.1681 3.1182 0.1355 39 1 12.2461 4.9192 -1.1855 40 1 12.1660 3.8987 -2.6417 41 1 15.6147 5.1903 -2.6486 42 1 8.1238 1.8423 -2.4558 43 1 8.0258 0.9326 -0.9262 44 1 5.7821 1.1251 -1.8766 45 1 5.9626 2.8906 -2.0208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318389255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:55 Heat of formation + Delta-G solvation = -159.637610 kcal Electronic energy + Delta-G solvation = -26965.825919 eV Core-core repulsion = 22917.486547 eV Total energy + Delta-G solvation = -4048.339373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.36517 -38.63239 -37.59281 -36.69025 -35.46774 -34.84141 -33.89029 -31.44552 -31.27614 -31.15126 -29.00826 -26.39062 -25.59369 -24.08455 -23.60103 -21.60715 -20.88903 -20.76072 -18.63241 -17.82978 -17.56015 -17.04362 -16.70243 -16.55224 -15.92172 -15.87844 -15.48116 -15.01955 -14.88951 -14.65854 -14.57245 -14.43406 -13.83414 -13.57614 -13.46651 -13.37485 -12.77962 -12.56538 -12.51974 -12.39575 -11.93685 -11.76121 -11.68316 -11.60267 -11.50521 -11.31239 -11.09567 -11.02426 -10.96119 -10.77221 -10.39387 -10.39135 -10.29212 -10.09439 -9.76913 -9.37737 -9.33206 -8.82414 -8.51193 -6.13116 -4.18517 0.73109 2.27756 2.42560 2.98779 3.25186 3.32581 3.36144 3.61762 4.27077 4.27674 4.37587 4.46653 4.49806 4.59644 4.63211 4.69523 4.79678 4.83829 4.88639 4.96075 5.04029 5.18673 5.20269 5.22267 5.37609 5.50392 5.54880 5.59133 5.66296 5.74625 5.79814 5.83251 6.03567 6.10453 6.17392 6.48924 6.49175 6.63921 7.13881 7.29388 7.35198 7.80360 7.89075 8.17127 8.85239 9.46408 10.97907 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.002110 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.132264 B =13264.185994 C =13546.224446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.042 3.958 4 C 0.513 3.487 5 O -0.516 6.516 6 N -0.726 5.726 7 C 0.148 3.852 8 C -0.138 4.138 9 C 0.122 3.878 10 N -1.008 6.008 11 S 2.591 3.409 12 O -0.965 6.965 13 O -0.964 6.964 14 C -0.588 4.588 15 C 0.027 3.973 16 C -0.520 4.520 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.121 3.879 25 C -0.141 4.141 26 H 0.044 0.956 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.400 0.600 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.264 0.736 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.246 -4.605 6.901 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.038 4.038 4 C 0.298 3.702 5 O -0.390 6.390 6 N -0.379 5.379 7 C 0.044 3.956 8 C -0.177 4.177 9 C -0.004 4.004 10 N -0.845 5.845 11 S 2.690 3.310 12 O -0.955 6.955 13 O -0.954 6.954 14 C -0.722 4.722 15 C -0.012 4.012 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.005 4.005 25 C -0.181 4.181 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.234 0.766 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.117 0.883 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -26.851 -4.708 6.282 27.975 hybrid contribution 0.710 -0.163 0.532 0.902 sum -26.141 -4.870 6.814 27.450 Atomic orbital electron populations 1.22851 0.80257 1.03443 1.00144 1.88028 1.19872 1.25119 1.95421 1.22252 0.91751 0.87129 1.02646 1.20259 0.88625 0.84726 0.76630 1.90753 1.74531 1.26410 1.47337 1.46007 1.07105 1.08630 1.76177 1.20981 0.78057 0.99455 0.97120 1.22147 0.96346 0.97460 1.01770 1.21332 0.93404 1.02510 0.83149 1.58017 1.55011 1.45719 1.25730 1.05682 0.76319 0.74765 0.74215 1.93521 1.85986 1.38782 1.77217 1.93530 1.84510 1.86438 1.30913 1.30486 1.17823 1.12811 1.11064 1.18973 0.90434 0.95227 0.96546 1.21049 0.89898 1.12442 1.32519 0.91977 1.25072 0.99535 0.95010 0.94905 1.69964 1.26672 1.21462 1.34750 0.86413 0.83064 0.79407 0.78394 1.19640 1.20798 1.20800 1.21280 0.92636 0.88467 0.98095 1.22180 0.96096 1.03198 0.96635 0.93780 0.93738 0.89002 0.90241 0.90181 0.76581 0.88942 0.90138 0.90609 0.91148 0.88084 0.86226 0.86258 0.94878 0.94869 0.92595 0.88271 0.91187 0.90279 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.37 -3.47 10.24 -55.14 -0.56 -4.04 16 3 C 0.04 0.28 6.42 36.01 0.23 0.51 16 4 C 0.51 4.98 7.87 -10.98 -0.09 4.90 16 5 O -0.52 -7.53 16.16 -14.35 -0.23 -7.76 16 6 N -0.73 -5.35 5.08 -53.76 -0.27 -5.62 16 7 C 0.15 1.34 2.42 -67.89 -0.16 1.18 16 8 C -0.14 -1.13 5.55 -26.61 -0.15 -1.28 16 9 C 0.12 1.26 6.43 -3.71 -0.02 1.23 16 10 N -1.01 -12.89 3.23 -113.77 -0.37 -13.26 16 11 S 2.59 44.96 5.45 -107.50 -0.59 44.38 16 12 O -0.96 -18.99 16.59 -57.54 -0.95 -19.94 16 13 O -0.96 -19.38 16.58 -57.54 -0.95 -20.33 16 14 C -0.59 -11.08 6.12 37.16 0.23 -10.86 16 15 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 16 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 17 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 20 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.12 1.40 6.40 -3.93 -0.03 1.37 16 25 C -0.14 -1.47 5.63 -26.83 -0.15 -1.62 16 26 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.31 8.14 -51.94 -0.42 -0.11 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.40 1.71 8.60 -40.82 -0.35 1.36 16 32 H 0.09 0.97 7.58 -51.93 -0.39 0.57 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.10 1.10 6.86 -51.93 -0.36 0.74 16 37 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 38 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.10 1.23 6.85 -51.93 -0.36 0.87 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -38.30 382.94 -9.36 -47.66 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.34 Total: -1.49 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 0.42 Total: -15.88 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.10 Total: -44.55 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -2.70 Total: -52.07 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 44.96 SS G_CDS: -0.59 Total: 44.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.30 -9.36 -47.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318389255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.973 kcal (2) G-P(sol) polarization free energy of solvation -38.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds