Wall clock time and date at job start Tue Mar 31 2020 17:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00044 * 2 1 4 4 C 1.50704 * 109.46703 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00291 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99742 * 179.97438 * 4 3 2 7 7 C 1.46494 * 119.99953 * 179.97438 * 6 4 3 8 8 C 1.53045 * 109.45996 * 205.00022 * 7 6 4 9 9 C 1.53192 * 109.31029 * 178.62980 * 8 7 6 10 10 N 1.46923 * 108.77662 * 54.63529 * 9 8 7 11 11 S 1.65606 * 120.62889 * 126.36777 * 10 9 8 12 12 O 1.42094 * 104.27817 * 333.92814 * 11 10 9 13 13 O 1.42106 * 104.27580 * 206.07045 * 11 10 9 14 14 C 1.81396 * 104.45103 * 90.00030 * 11 10 9 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 C 1.46931 * 118.74107 * 306.64334 * 10 9 8 25 25 C 1.52760 * 109.00482 * 53.30564 * 24 10 9 26 26 H 1.09002 * 109.47261 * 300.00962 * 1 2 3 27 27 H 1.08998 * 109.46866 * 60.00786 * 1 2 3 28 28 H 1.08995 * 109.47365 * 180.02562 * 1 2 3 29 29 H 1.08989 * 109.47634 * 59.99411 * 3 2 1 30 30 H 1.09002 * 109.46638 * 299.99014 * 3 2 1 31 31 H 0.97005 * 119.99606 * 359.97438 * 6 4 3 32 32 H 1.09002 * 109.46053 * 324.97699 * 7 6 4 33 33 H 1.08998 * 109.49463 * 58.67782 * 8 7 6 34 34 H 1.09001 * 109.49708 * 298.58199 * 8 7 6 35 35 H 1.09004 * 109.58820 * 294.84560 * 9 8 7 36 36 H 1.08997 * 109.70082 * 174.49376 * 9 8 7 37 37 H 1.09002 * 109.47134 * 59.99751 * 14 11 10 38 38 H 1.08998 * 109.46953 * 300.00489 * 14 11 10 39 39 H 1.09002 * 109.47153 * 59.99820 * 15 14 11 40 40 H 1.09001 * 109.46832 * 300.00011 * 15 14 11 41 41 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 42 42 H 1.08996 * 109.58620 * 173.14734 * 24 10 9 43 43 H 1.09000 * 109.58287 * 293.56713 * 24 10 9 44 44 H 1.09000 * 109.55779 * 185.55242 * 25 24 10 45 45 H 1.09003 * 109.35959 * 65.50545 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1863 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2766 2.2967 0.0002 7 6 5.7369 2.1809 0.0014 8 6 6.3481 3.4449 0.6106 9 6 7.8734 3.3059 0.6416 10 7 8.3479 2.9995 -0.7147 11 16 9.5229 3.9243 -1.4265 12 8 9.4012 5.1918 -0.7959 13 8 9.2906 3.7742 -2.8204 14 6 11.0794 3.1235 -0.9508 15 6 12.2550 3.8939 -1.5553 16 6 13.5481 3.2289 -1.1595 17 1 13.5330 2.3449 -0.5393 18 6 14.7505 3.7484 -1.5902 19 7 14.7688 4.8246 -2.3459 20 14 16.3533 2.9237 -1.1002 21 1 16.0619 1.7388 -0.2539 22 1 17.0815 2.4928 -2.3207 23 1 17.1908 3.8836 -0.3371 24 6 7.7559 1.8607 -1.4300 25 6 6.2359 2.0126 -1.4355 26 1 -0.3634 0.5140 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.6886 1.8464 0.8898 30 1 1.6887 1.8462 -0.8901 31 1 3.8594 3.1724 -0.0009 32 1 6.0320 1.3138 0.5922 33 1 5.9741 3.5769 1.6259 34 1 6.0737 4.3094 0.0061 35 1 8.1530 2.4980 1.3178 36 1 8.3205 4.2394 0.9830 37 1 11.0885 2.0983 -1.3210 38 1 11.1681 3.1182 0.1355 39 1 12.2461 4.9192 -1.1855 40 1 12.1660 3.8987 -2.6417 41 1 15.6147 5.1903 -2.6486 42 1 8.1238 1.8423 -2.4558 43 1 8.0258 0.9326 -0.9262 44 1 5.7821 1.1251 -1.8766 45 1 5.9626 2.8906 -2.0208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318389255.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:54 Heat of formation + Delta-G solvation = -189.911749 kcal Electronic energy + Delta-G solvation = -26967.138705 eV Core-core repulsion = 22917.486547 eV Total energy + Delta-G solvation = -4049.652158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.09798 -39.39363 -38.24821 -38.20818 -36.98552 -35.89084 -35.68766 -33.11534 -32.25048 -32.11305 -29.54179 -27.58278 -26.85108 -24.93361 -24.45024 -23.47392 -21.65845 -21.59011 -19.81579 -19.19001 -18.46008 -18.22774 -17.67261 -17.26144 -17.15438 -17.01969 -16.59096 -16.49257 -15.83967 -15.66252 -15.56413 -15.36303 -15.06114 -14.65304 -14.53028 -14.35295 -14.08901 -13.72233 -13.57007 -13.48740 -13.17348 -13.13002 -12.95508 -12.93133 -12.78466 -12.51470 -12.32837 -12.25629 -12.16378 -12.11320 -11.94220 -11.76304 -11.57584 -11.10520 -10.87537 -10.74516 -10.65859 -10.10859 -9.95452 -8.26591 -6.40406 -0.69567 1.40559 1.41001 1.54377 1.58158 1.73922 1.86422 2.37629 2.87217 3.06787 3.14243 3.19409 3.58159 3.76827 3.83919 3.91790 4.07534 4.09030 4.19498 4.22464 4.24579 4.30633 4.40261 4.51729 4.59096 4.59465 4.75396 4.77454 4.79228 4.81246 4.89058 4.92907 5.08749 5.18409 5.26630 5.28000 5.28720 5.47282 5.66972 5.68398 6.06521 6.06620 6.57796 6.73447 7.25254 7.29796 8.85711 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.032470 B = 0.002110 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.132264 B =13264.185994 C =13546.224446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.043 3.957 4 C 0.508 3.492 5 O -0.573 6.573 6 N -0.710 5.710 7 C 0.151 3.849 8 C -0.130 4.130 9 C 0.109 3.891 10 N -0.996 5.996 11 S 2.618 3.382 12 O -0.988 6.988 13 O -0.994 6.994 14 C -0.590 4.590 15 C 0.020 3.980 16 C -0.539 4.539 17 H 0.074 0.926 18 C -0.004 4.004 19 N -0.933 5.933 20 Si 0.974 3.026 21 H -0.257 1.257 22 H -0.279 1.279 23 H -0.277 1.277 24 C 0.115 3.885 25 C -0.137 4.137 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.418 0.582 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.008 0.992 40 H 0.005 0.995 41 H 0.267 0.733 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.747 -5.233 8.667 30.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.452 6.452 6 N -0.363 5.363 7 C 0.046 3.954 8 C -0.169 4.169 9 C -0.016 4.016 10 N -0.835 5.835 11 S 2.716 3.284 12 O -0.979 6.979 13 O -0.985 6.985 14 C -0.722 4.722 15 C -0.019 4.019 16 C -0.578 4.578 17 H 0.092 0.908 18 C -0.202 4.202 19 N -0.573 5.573 20 Si 0.797 3.203 21 H -0.181 1.181 22 H -0.204 1.204 23 H -0.203 1.203 24 C -0.010 4.010 25 C -0.177 4.177 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.255 0.745 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.026 0.974 40 H 0.023 0.977 41 H 0.076 0.924 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.363 -5.294 8.058 29.957 hybrid contribution 1.060 0.038 -0.010 1.060 sum -27.304 -5.256 8.048 28.946 Atomic orbital electron populations 1.23018 0.78358 1.04061 1.01640 1.87967 1.22082 1.26979 1.95801 1.22408 0.89168 0.86692 1.05336 1.20928 0.90155 0.84143 0.75294 1.90726 1.75725 1.28542 1.50163 1.45844 1.06371 1.09199 1.74928 1.20852 0.79096 0.99557 0.95907 1.22107 0.94610 0.96785 1.03403 1.21695 0.94859 1.03305 0.81697 1.57622 1.53338 1.45640 1.26926 1.04574 0.76104 0.74363 0.73344 1.93482 1.86331 1.40518 1.77543 1.93485 1.84895 1.86892 1.33178 1.30415 1.16658 1.12977 1.12129 1.18826 0.92982 0.94911 0.95193 1.21556 0.91011 1.12823 1.32391 0.90755 1.26109 1.03732 0.95599 0.94787 1.70104 1.27798 1.23213 1.36179 0.85268 0.78064 0.78699 0.78235 1.18053 1.20421 1.20256 1.21453 0.93363 0.88522 0.97657 1.22126 0.95096 1.02777 0.97722 0.92103 0.92321 0.89007 0.87114 0.87537 0.74453 0.89979 0.87310 0.90524 0.88741 0.88506 0.84453 0.84053 0.97393 0.97652 0.92399 0.89451 0.89289 0.90900 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -7.22 10.24 -129.94 -1.33 -8.55 16 3 C 0.04 0.46 6.42 71.24 0.46 0.92 16 4 C 0.51 9.07 7.87 87.66 0.69 9.76 16 5 O -0.57 -16.60 16.16 16.01 0.26 -16.34 16 6 N -0.71 -8.75 5.08 -442.40 -2.25 -11.00 16 7 C 0.15 2.42 2.42 45.02 0.11 2.53 16 8 C -0.13 -1.76 5.55 30.67 0.17 -1.59 16 9 C 0.11 1.99 6.43 86.36 0.56 2.54 16 10 N -1.00 -24.11 3.23 -513.85 -1.66 -25.77 16 11 S 2.62 90.92 5.45 -56.49 -0.31 90.61 16 12 O -0.99 -39.01 16.59 -127.65 -2.12 -41.13 16 13 O -0.99 -40.74 16.58 -127.65 -2.12 -42.85 16 14 C -0.59 -22.13 6.12 71.98 0.44 -21.69 16 15 C 0.02 1.03 4.98 29.85 0.15 1.18 16 16 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 17 H 0.07 3.84 7.74 -2.91 -0.02 3.82 16 18 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 19 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 20 Si 0.97 43.48 29.54 68.60 2.03 45.51 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 24 C 0.12 2.54 6.40 86.22 0.55 3.09 16 25 C -0.14 -2.69 5.63 30.53 0.17 -2.51 16 26 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.42 2.20 8.60 -92.70 -0.80 1.40 16 32 H 0.08 1.56 7.58 -2.39 -0.02 1.55 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.30 8.14 -2.38 -0.02 1.29 16 36 H 0.10 1.90 6.86 -2.39 -0.02 1.89 16 37 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 38 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.09 2.15 6.85 -2.39 -0.02 2.13 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -85.99 382.94 -1.78 -87.77 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.19 Total: 12.13 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 5.24 Total: -33.84 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -3.62 Total: -93.31 kcal Atomic # 8 Polarization: -103.57 SS G_CDS: -5.31 Total: -108.87 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 90.92 SS G_CDS: -0.31 Total: 90.61 kcal Total: -85.99 -1.78 -87.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318389255.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.138 kcal (2) G-P(sol) polarization free energy of solvation -85.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds