Wall clock time and date at job start Tue Mar 31 2020 17:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37097 * 120.00124 * 2 1 4 4 H 1.08000 * 120.00289 * 205.93640 * 3 2 1 5 5 C 1.38947 * 119.99865 * 25.92579 * 3 2 1 6 6 N 1.31418 * 120.00196 * 20.48078 * 5 3 2 7 7 Si 1.86799 * 120.00228 * 200.47694 * 5 3 2 8 8 H 1.48498 * 109.47364 * 0.02562 * 7 5 3 9 9 H 1.48510 * 109.47190 * 120.00221 * 7 5 3 10 10 H 1.48502 * 109.47478 * 240.00270 * 7 5 3 11 11 C 1.34777 * 120.00542 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00559 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99650 * 359.97438 * 11 2 1 14 14 H 1.08999 * 109.58271 * 355.94465 * 13 11 2 15 15 C 1.53191 * 109.70247 * 116.29859 * 13 11 2 16 16 C 1.53043 * 109.31101 * 174.49413 * 15 13 11 17 17 C 1.53037 * 109.53684 * 298.63195 * 16 15 13 18 18 C 1.52760 * 109.38336 * 61.24332 * 17 16 15 19 19 N 1.46920 * 109.58739 * 235.65897 * 13 11 2 20 20 C 1.34775 * 120.63408 * 6.43865 * 19 13 11 21 21 O 1.21545 * 119.99955 * 6.40532 * 20 19 13 22 22 C 1.47932 * 120.00329 * 186.39685 * 20 19 13 23 23 C 1.39978 * 120.11751 * 201.81131 * 22 20 19 24 24 C 1.38416 * 117.97097 * 180.27779 * 23 22 20 25 25 C 1.39356 * 118.03424 * 0.02562 * 24 23 22 26 26 O 1.35519 * 120.03021 * 179.97438 * 25 24 23 27 27 N 1.32673 * 119.94416 * 0.02562 * 25 24 23 28 28 N 1.28355 * 122.19844 * 359.97438 * 27 25 24 29 29 H 1.09003 * 109.47548 * 267.33902 * 1 2 3 30 30 H 1.09001 * 109.47263 * 27.34105 * 1 2 3 31 31 H 1.09007 * 109.47050 * 147.33999 * 1 2 3 32 32 H 0.96993 * 120.00352 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.49525 * 294.44539 * 15 13 11 34 34 H 1.08993 * 109.49781 * 54.53872 * 15 13 11 35 35 H 1.08998 * 109.45882 * 58.65602 * 16 15 13 36 36 H 1.09002 * 109.45903 * 178.62647 * 16 15 13 37 37 H 1.09006 * 109.49371 * 181.31635 * 17 16 15 38 38 H 1.08999 * 109.49995 * 301.41788 * 17 16 15 39 39 H 1.08998 * 109.51036 * 185.70153 * 18 17 16 40 40 H 1.09002 * 109.43411 * 65.41910 * 18 17 16 41 41 H 1.08003 * 121.01534 * 0.26116 * 23 22 20 42 42 H 1.07997 * 120.98479 * 180.02562 * 24 23 22 43 43 H 0.96704 * 114.00078 * 270.03046 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1488 1.2344 -0.4091 5 6 1.5606 2.3300 0.5261 6 7 0.5555 2.2235 1.3661 7 14 2.1962 4.0178 0.0395 8 1 3.3256 3.8659 -0.9126 9 1 1.1049 4.7903 -0.6069 10 1 2.6629 4.7392 1.2508 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 1 0.3157 -2.2765 0.0726 15 6 1.6801 -3.2388 -1.2938 16 6 1.0226 -4.6190 -1.2251 17 6 1.6092 -5.4075 -0.0520 18 6 1.3181 -4.6675 1.2524 19 7 1.8159 -3.2895 1.1420 20 6 2.6557 -2.7866 2.0684 21 8 2.9726 -1.6139 2.0287 22 6 3.1919 -3.6619 3.1337 23 6 3.6693 -3.1054 4.3260 24 6 4.1665 -3.9650 5.2903 25 6 4.1620 -5.3311 5.0150 26 8 4.6397 -6.2089 5.9303 27 7 3.6904 -5.7715 3.8558 28 7 3.2286 -4.9775 2.9592 29 1 -0.3634 -0.0477 1.0266 30 1 -0.3634 0.9129 -0.4720 31 1 -0.3633 -0.8652 -0.5546 32 1 0.1435 3.0212 1.7331 33 1 1.2787 -2.6864 -2.1435 34 1 2.7576 -3.3544 -1.4106 35 1 -0.0519 -4.5027 -1.0834 36 1 1.2102 -5.1573 -2.1541 37 1 1.1573 -6.3989 -0.0178 38 1 2.6873 -5.5028 -0.1805 39 1 1.8205 -5.1726 2.0774 40 1 0.2427 -4.6544 1.4298 41 1 3.6505 -2.0379 4.4886 42 1 4.5468 -3.5882 6.2282 43 1 5.5846 -6.3946 5.8414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318709711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:12 Heat of formation + Delta-G solvation = 1.434156 kcal Electronic energy + Delta-G solvation = -30194.136402 eV Core-core repulsion = 26049.630426 eV Total energy + Delta-G solvation = -4144.505977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53377 -40.10795 -38.08858 -37.36207 -36.96277 -34.41001 -33.41591 -32.86939 -31.84357 -31.38744 -30.51484 -26.55690 -25.96305 -24.96806 -24.63006 -24.14432 -23.01577 -21.27433 -19.91135 -19.43230 -18.86798 -17.79910 -17.14538 -16.66025 -16.37001 -15.94719 -15.62734 -14.99583 -14.82781 -14.52239 -14.38079 -14.31904 -14.00647 -13.79911 -13.52662 -13.42055 -13.12223 -12.88861 -12.55580 -12.45800 -12.19727 -11.85245 -11.44992 -11.39391 -11.14809 -11.02775 -10.91285 -10.74287 -10.62666 -10.53671 -10.31485 -10.22988 -10.17752 -9.84925 -9.50760 -9.13859 -8.79583 -8.31471 -8.00771 -7.38971 -6.17446 -3.67996 0.24388 0.50381 2.69349 2.90923 3.13426 3.25489 3.33668 3.40943 3.57833 3.92408 4.14004 4.27386 4.37051 4.48108 4.64906 4.72907 4.90873 5.03883 5.10492 5.22177 5.24717 5.37358 5.51679 5.53434 5.59558 5.71752 5.73407 5.87073 5.94674 6.09592 6.09963 6.13762 6.27530 6.33736 6.34967 6.60184 6.82842 6.90506 6.95979 7.18126 7.69534 7.74206 8.26437 8.32523 8.52158 8.69511 9.40462 9.60498 10.21253 10.89367 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.004150 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.842771 B = 6745.884852 C = 8313.488640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.447 5.447 3 C -0.294 4.294 4 H 0.094 0.906 5 C 0.030 3.970 6 N -0.878 5.878 7 Si 0.916 3.084 8 H -0.269 1.269 9 H -0.283 1.283 10 H -0.284 1.284 11 C 0.476 3.524 12 O -0.563 6.563 13 C 0.127 3.873 14 H 0.086 0.914 15 C -0.120 4.120 16 C -0.119 4.119 17 C -0.127 4.127 18 C 0.081 3.919 19 N -0.584 5.584 20 C 0.552 3.448 21 O -0.445 6.445 22 C 0.036 3.964 23 C -0.048 4.048 24 C -0.138 4.138 25 C 0.265 3.735 26 O -0.474 6.474 27 N -0.265 5.265 28 N -0.180 5.180 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.263 0.737 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.129 0.871 40 H 0.058 0.942 41 H 0.168 0.832 42 H 0.162 0.838 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.889 -15.688 4.658 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.168 5.168 3 C -0.422 4.422 4 H 0.112 0.888 5 C -0.172 4.172 6 N -0.518 5.518 7 Si 0.743 3.257 8 H -0.194 1.194 9 H -0.209 1.209 10 H -0.210 1.210 11 C 0.263 3.737 12 O -0.445 6.445 13 C 0.021 3.979 14 H 0.104 0.896 15 C -0.159 4.159 16 C -0.156 4.156 17 C -0.165 4.165 18 C -0.042 4.042 19 N -0.320 5.320 20 C 0.334 3.666 21 O -0.312 6.312 22 C -0.111 4.111 23 C -0.077 4.077 24 C -0.168 4.168 25 C 0.080 3.920 26 O -0.280 6.280 27 N -0.117 5.117 28 N -0.030 5.030 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.073 0.927 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.146 0.854 40 H 0.076 0.924 41 H 0.186 0.814 42 H 0.180 0.820 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.731 -16.142 4.074 16.664 hybrid contribution 0.772 1.953 0.813 2.252 sum 1.504 -14.189 4.887 15.083 Atomic orbital electron populations 1.21429 0.82219 0.99130 1.00650 1.43348 1.04653 1.04546 1.64224 1.19504 1.01434 0.83925 1.37314 0.88801 1.25234 0.97269 0.99760 0.94977 1.70061 1.25235 1.29371 1.27090 0.86040 0.78730 0.82427 0.78524 1.19355 1.20861 1.21039 1.19337 0.87965 0.83951 0.82439 1.90512 1.13865 1.86350 1.53806 1.21389 0.99285 0.91514 0.85727 0.89650 1.21791 1.02442 0.95481 0.96149 1.21558 0.99916 0.95732 0.98432 1.21737 1.01990 0.98370 0.94421 1.22507 0.99257 0.81456 1.00983 1.47554 1.47037 1.14068 1.23366 1.17575 0.80399 0.86962 0.81622 1.91158 1.55903 1.14183 1.69984 1.23232 0.98714 0.92939 0.96189 1.22483 0.91126 1.03328 0.90771 1.22554 1.00077 0.92578 1.01607 1.20960 0.94953 0.87638 0.88415 1.84728 1.30615 1.63376 1.49305 1.73064 1.08935 1.30510 0.99238 1.73153 1.08149 1.01773 1.19882 0.93081 0.91638 0.95394 0.92745 0.90737 0.90631 0.91909 0.91720 0.91001 0.91270 0.85420 0.92350 0.81402 0.82046 0.73392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.51 8.25 59.84 0.49 3.01 16 2 N -0.45 -11.90 3.00 -122.20 -0.37 -12.26 16 3 C -0.29 -8.55 9.15 -14.93 -0.14 -8.69 16 4 H 0.09 2.89 7.53 -52.49 -0.39 2.49 16 5 C 0.03 0.84 4.86 -17.47 -0.08 0.75 16 6 N -0.88 -24.56 11.43 55.50 0.63 -23.93 16 7 Si 0.92 21.48 29.60 -169.99 -5.03 16.45 16 8 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 C 0.48 12.03 4.44 -10.98 -0.05 11.99 16 12 O -0.56 -16.29 13.95 -19.67 -0.27 -16.56 16 13 C 0.13 2.46 2.88 -68.75 -0.20 2.26 16 14 H 0.09 1.55 5.55 -51.93 -0.29 1.26 16 15 C -0.12 -1.94 5.34 -26.61 -0.14 -2.08 16 16 C -0.12 -1.45 5.89 -26.69 -0.16 -1.61 16 17 C -0.13 -1.55 6.06 -26.84 -0.16 -1.72 16 18 C 0.08 1.14 6.11 -3.93 -0.02 1.12 16 19 N -0.58 -10.66 2.98 -167.87 -0.50 -11.16 16 20 C 0.55 11.22 7.24 -12.29 -0.09 11.13 16 21 O -0.44 -11.28 12.11 -19.89 -0.24 -11.52 16 22 C 0.04 0.58 6.49 -82.85 -0.54 0.04 16 23 C -0.05 -0.65 9.71 -38.86 -0.38 -1.02 16 24 C -0.14 -1.41 10.14 -39.10 -0.40 -1.81 16 25 C 0.26 2.94 7.85 -16.77 -0.13 2.81 16 26 O -0.47 -3.98 13.56 -18.25 -0.25 -4.23 16 27 N -0.26 -3.63 11.54 30.55 0.35 -3.27 16 28 N -0.18 -2.72 7.70 33.32 0.26 -2.46 16 29 H 0.05 1.23 7.74 -51.93 -0.40 0.83 16 30 H 0.06 1.54 7.23 -51.93 -0.38 1.17 16 31 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 32 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.37 8.05 -51.93 -0.42 0.95 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.13 1.82 3.88 -115.79 -0.45 1.37 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.17 2.22 7.86 -52.48 -0.41 1.81 16 42 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.41 1.27 9.06 45.56 0.41 1.69 16 LS Contribution 349.90 15.07 5.27 5.27 Total: -1.00 -37.43 349.90 -6.88 -44.31 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.74 Total: 3.17 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: -1.99 Total: 16.18 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: 0.38 Total: -53.08 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.76 Total: -32.31 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.43 -6.88 -44.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318709711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.742 kcal (2) G-P(sol) polarization free energy of solvation -37.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds