Wall clock time and date at job start Tue Mar 31 2020 17:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37097 * 120.00124 * 2 1 4 4 H 1.08000 * 120.00289 * 205.93640 * 3 2 1 5 5 C 1.38947 * 119.99865 * 25.92579 * 3 2 1 6 6 N 1.31418 * 120.00196 * 20.48078 * 5 3 2 7 7 Si 1.86799 * 120.00228 * 200.47694 * 5 3 2 8 8 H 1.48498 * 109.47364 * 0.02562 * 7 5 3 9 9 H 1.48510 * 109.47190 * 120.00221 * 7 5 3 10 10 H 1.48502 * 109.47478 * 240.00270 * 7 5 3 11 11 C 1.34777 * 120.00542 * 180.02562 * 2 1 3 12 12 O 1.21291 * 120.00559 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99650 * 359.97438 * 11 2 1 14 14 H 1.08999 * 109.58271 * 355.94465 * 13 11 2 15 15 C 1.53191 * 109.70247 * 116.29859 * 13 11 2 16 16 C 1.53043 * 109.31101 * 174.49413 * 15 13 11 17 17 C 1.53037 * 109.53684 * 298.63195 * 16 15 13 18 18 C 1.52760 * 109.38336 * 61.24332 * 17 16 15 19 19 N 1.46920 * 109.58739 * 235.65897 * 13 11 2 20 20 C 1.34775 * 120.63408 * 6.43865 * 19 13 11 21 21 O 1.21545 * 119.99955 * 6.40532 * 20 19 13 22 22 C 1.47932 * 120.00329 * 186.39685 * 20 19 13 23 23 C 1.39978 * 120.11751 * 201.81131 * 22 20 19 24 24 C 1.38416 * 117.97097 * 180.27779 * 23 22 20 25 25 C 1.39356 * 118.03424 * 0.02562 * 24 23 22 26 26 O 1.35519 * 120.03021 * 179.97438 * 25 24 23 27 27 N 1.32673 * 119.94416 * 0.02562 * 25 24 23 28 28 N 1.28355 * 122.19844 * 359.97438 * 27 25 24 29 29 H 1.09003 * 109.47548 * 267.33902 * 1 2 3 30 30 H 1.09001 * 109.47263 * 27.34105 * 1 2 3 31 31 H 1.09007 * 109.47050 * 147.33999 * 1 2 3 32 32 H 0.96993 * 120.00352 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.49525 * 294.44539 * 15 13 11 34 34 H 1.08993 * 109.49781 * 54.53872 * 15 13 11 35 35 H 1.08998 * 109.45882 * 58.65602 * 16 15 13 36 36 H 1.09002 * 109.45903 * 178.62647 * 16 15 13 37 37 H 1.09006 * 109.49371 * 181.31635 * 17 16 15 38 38 H 1.08999 * 109.49995 * 301.41788 * 17 16 15 39 39 H 1.08998 * 109.51036 * 185.70153 * 18 17 16 40 40 H 1.09002 * 109.43411 * 65.41910 * 18 17 16 41 41 H 1.08003 * 121.01534 * 0.26116 * 23 22 20 42 42 H 1.07997 * 120.98479 * 180.02562 * 24 23 22 43 43 H 0.96704 * 114.00078 * 270.03046 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1873 0.0000 4 1 3.1488 1.2344 -0.4091 5 6 1.5606 2.3300 0.5261 6 7 0.5555 2.2235 1.3661 7 14 2.1962 4.0178 0.0395 8 1 3.3256 3.8659 -0.9126 9 1 1.1049 4.7903 -0.6069 10 1 2.6629 4.7392 1.2508 11 6 2.1389 -1.1671 -0.0005 12 8 3.3518 -1.1671 -0.0010 13 6 1.3854 -2.4723 -0.0005 14 1 0.3157 -2.2765 0.0726 15 6 1.6801 -3.2388 -1.2938 16 6 1.0226 -4.6190 -1.2251 17 6 1.6092 -5.4075 -0.0520 18 6 1.3181 -4.6675 1.2524 19 7 1.8159 -3.2895 1.1420 20 6 2.6557 -2.7866 2.0684 21 8 2.9726 -1.6139 2.0287 22 6 3.1919 -3.6619 3.1337 23 6 3.6693 -3.1054 4.3260 24 6 4.1665 -3.9650 5.2903 25 6 4.1620 -5.3311 5.0150 26 8 4.6397 -6.2089 5.9303 27 7 3.6904 -5.7715 3.8558 28 7 3.2286 -4.9775 2.9592 29 1 -0.3634 -0.0477 1.0266 30 1 -0.3634 0.9129 -0.4720 31 1 -0.3633 -0.8652 -0.5546 32 1 0.1435 3.0212 1.7331 33 1 1.2787 -2.6864 -2.1435 34 1 2.7576 -3.3544 -1.4106 35 1 -0.0519 -4.5027 -1.0834 36 1 1.2102 -5.1573 -2.1541 37 1 1.1573 -6.3989 -0.0178 38 1 2.6873 -5.5028 -0.1805 39 1 1.8205 -5.1726 2.0774 40 1 0.2427 -4.6544 1.4298 41 1 3.6505 -2.0379 4.4886 42 1 4.5468 -3.5882 6.2282 43 1 5.5846 -6.3946 5.8414 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318709711.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:11 Heat of formation + Delta-G solvation = -28.900596 kcal Electronic energy + Delta-G solvation = -30195.451816 eV Core-core repulsion = 26049.630426 eV Total energy + Delta-G solvation = -4145.821390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.65323 -41.56223 -39.51198 -38.56865 -38.37604 -36.45691 -34.42459 -34.16765 -33.69169 -32.76506 -31.82226 -28.35205 -27.45500 -26.50925 -25.82903 -25.40536 -24.44097 -22.58351 -21.32140 -20.43284 -20.11103 -19.09769 -18.76701 -18.40377 -17.76942 -17.22457 -17.03947 -16.58187 -16.22404 -16.04139 -15.87939 -15.80135 -15.22488 -15.03756 -14.98282 -14.62677 -14.49074 -14.40178 -14.07485 -13.60645 -13.39477 -13.35701 -13.19555 -13.16525 -12.80363 -12.63644 -12.46149 -12.22464 -12.11628 -11.97193 -11.68092 -11.64741 -11.40082 -11.03249 -10.87862 -10.71018 -10.44871 -10.10334 -9.67614 -9.42394 -8.28482 -5.87713 -0.80113 -0.48197 1.34266 1.38880 1.48139 1.53974 1.59740 2.09384 2.30101 2.38266 2.42708 2.77575 3.03311 3.14724 3.34685 3.51636 3.66325 3.82794 3.85771 3.94473 4.00790 4.14748 4.18708 4.31268 4.42285 4.54502 4.58557 4.69277 4.79130 4.87937 4.91860 4.94909 4.98457 5.12928 5.17490 5.26760 5.28287 5.50020 5.51734 5.58055 6.18448 6.28392 6.43533 6.58626 7.01541 7.26867 7.32478 7.57818 8.21403 8.77156 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013312 B = 0.004150 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.842771 B = 6745.884852 C = 8313.488640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.468 5.468 3 C -0.330 4.330 4 H 0.060 0.940 5 C -0.004 4.004 6 N -0.898 5.898 7 Si 0.982 3.018 8 H -0.275 1.275 9 H -0.262 1.262 10 H -0.280 1.280 11 C 0.471 3.529 12 O -0.610 6.610 13 C 0.131 3.869 14 H 0.102 0.898 15 C -0.115 4.115 16 C -0.109 4.109 17 C -0.123 4.123 18 C 0.075 3.925 19 N -0.584 5.584 20 C 0.543 3.457 21 O -0.514 6.514 22 C 0.012 3.988 23 C -0.060 4.060 24 C -0.111 4.111 25 C 0.281 3.719 26 O -0.470 6.470 27 N -0.283 5.283 28 N -0.182 5.182 29 H 0.033 0.967 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.269 0.731 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.051 0.949 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.160 0.840 42 H 0.205 0.795 43 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.120 -17.915 5.479 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.188 5.188 3 C -0.458 4.458 4 H 0.078 0.922 5 C -0.205 4.205 6 N -0.537 5.537 7 Si 0.806 3.194 8 H -0.199 1.199 9 H -0.186 1.186 10 H -0.206 1.206 11 C 0.261 3.739 12 O -0.495 6.495 13 C 0.025 3.975 14 H 0.120 0.880 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.161 4.161 18 C -0.047 4.047 19 N -0.318 5.318 20 C 0.328 3.672 21 O -0.387 6.387 22 C -0.134 4.134 23 C -0.089 4.089 24 C -0.141 4.141 25 C 0.097 3.903 26 O -0.280 6.280 27 N -0.136 5.136 28 N -0.031 5.031 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.146 0.854 40 H 0.099 0.901 41 H 0.178 0.822 42 H 0.222 0.778 43 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -0.305 -18.443 4.895 19.084 hybrid contribution 1.184 2.479 0.718 2.839 sum 0.878 -15.964 5.613 16.945 Atomic orbital electron populations 1.21377 0.80252 1.00559 1.00079 1.43606 1.05988 1.04452 1.64770 1.19386 1.01101 0.86154 1.39207 0.92179 1.25994 0.97415 1.02801 0.94259 1.70131 1.25809 1.30624 1.27093 0.85067 0.78477 0.77761 0.78097 1.19938 1.18645 1.20604 1.20276 0.87830 0.85564 0.80249 1.90458 1.16320 1.87423 1.55304 1.21339 0.98937 0.89187 0.88085 0.88002 1.21807 1.01225 0.97958 0.94437 1.21555 1.00615 0.92862 0.99617 1.21750 1.01297 0.99824 0.93197 1.22827 1.00356 0.79137 1.02354 1.47810 1.46299 1.15471 1.22266 1.18204 0.79987 0.86774 0.82281 1.91110 1.58392 1.17077 1.72085 1.22741 1.01164 0.93257 0.96189 1.22515 0.91843 1.03592 0.90937 1.22886 0.97676 0.91599 1.01916 1.21045 0.93339 0.88333 0.87611 1.84697 1.32880 1.62508 1.47955 1.72998 1.09945 1.30305 1.00339 1.73100 1.08449 1.00961 1.20625 0.94859 0.92812 0.90896 0.92143 0.89873 0.93494 0.89661 0.89212 0.87391 0.93038 0.85374 0.90129 0.82188 0.77841 0.70306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.63 8.25 127.77 1.05 6.68 16 2 N -0.47 -26.09 3.00 -658.90 -1.97 -28.06 16 3 C -0.33 -20.34 9.15 84.04 0.77 -19.57 16 4 H 0.06 4.01 7.53 -2.91 -0.02 3.98 16 5 C 0.00 -0.20 4.86 84.92 0.41 0.21 16 6 N -0.90 -51.37 11.43 21.66 0.25 -51.12 16 7 Si 0.98 45.24 29.60 68.60 2.03 47.27 16 8 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 9 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 11 C 0.47 25.14 4.44 87.66 0.39 25.53 16 12 O -0.61 -37.98 13.95 21.04 0.29 -37.69 16 13 C 0.13 5.14 2.88 44.23 0.13 5.26 16 14 H 0.10 3.59 5.55 -2.39 -0.01 3.58 16 15 C -0.12 -3.67 5.34 30.67 0.16 -3.51 16 16 C -0.11 -2.32 5.89 30.62 0.18 -2.14 16 17 C -0.12 -2.68 6.06 30.53 0.19 -2.50 16 18 C 0.07 1.98 6.11 86.22 0.53 2.51 16 19 N -0.58 -21.65 2.98 -803.30 -2.39 -24.05 16 20 C 0.54 23.28 7.24 86.81 0.63 23.90 16 21 O -0.51 -28.11 12.11 20.25 0.25 -27.87 16 22 C 0.01 0.42 6.49 42.00 0.27 0.69 16 23 C -0.06 -1.64 9.71 22.73 0.22 -1.41 16 24 C -0.11 -2.00 10.14 22.58 0.23 -1.77 16 25 C 0.28 5.47 7.85 84.83 0.67 6.14 16 26 O -0.47 -6.09 13.56 -88.22 -1.20 -7.28 16 27 N -0.28 -7.26 11.54 -170.01 -1.96 -9.23 16 28 N -0.18 -5.41 7.70 -48.50 -0.37 -5.78 16 29 H 0.03 1.64 7.74 -2.39 -0.02 1.62 16 30 H 0.05 2.58 7.23 -2.39 -0.02 2.56 16 31 H 0.07 2.66 6.17 -2.38 -0.01 2.64 16 32 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 1.75 8.05 -2.39 -0.02 1.73 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.13 3.52 3.88 -84.99 -0.33 3.19 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.16 4.53 7.86 -2.91 -0.02 4.50 16 42 H 0.20 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.43 0.92 9.06 -74.05 -0.67 0.25 16 Total: -1.00 -89.43 349.90 0.83 -88.61 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.08 Total: 15.18 kcal Atomic # 6 Polarization: 34.19 SS G_CDS: 5.83 Total: 40.02 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -6.45 Total: -118.24 kcal Atomic # 8 Polarization: -72.18 SS G_CDS: -0.66 Total: -72.84 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -89.43 0.83 -88.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318709711.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.704 kcal (2) G-P(sol) polarization free energy of solvation -89.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds