Wall clock time and date at job start Tue Mar 31 2020 17:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37093 * 119.99831 * 2 1 4 4 H 1.07996 * 119.99904 * 208.00106 * 3 2 1 5 5 C 1.38953 * 120.00146 * 28.00377 * 3 2 1 6 6 N 1.31417 * 119.99851 * 8.56130 * 5 3 2 7 7 Si 1.86800 * 120.00176 * 188.56031 * 5 3 2 8 8 H 1.48497 * 109.47038 * 60.00103 * 7 5 3 9 9 H 1.48498 * 109.46927 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47216 * 299.99889 * 7 5 3 11 11 C 1.34776 * 119.99957 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99969 * 180.02562 * 11 2 1 13 13 C 1.50703 * 120.00003 * 0.02562 * 11 2 1 14 14 H 1.08994 * 109.58431 * 8.99633 * 13 11 2 15 15 C 1.53198 * 109.58302 * 248.71075 * 13 11 2 16 16 C 1.53035 * 109.31074 * 185.57701 * 15 13 11 17 17 C 1.53048 * 109.53838 * 61.36825 * 16 15 13 18 18 C 1.53202 * 109.30872 * 298.63360 * 17 16 15 19 19 N 1.46920 * 108.77442 * 54.63760 * 18 17 16 20 20 C 1.34771 * 120.63379 * 126.39293 * 19 18 17 21 21 O 1.21541 * 120.00439 * 172.78629 * 20 19 18 22 22 C 1.47937 * 119.99890 * 352.77796 * 20 19 18 23 23 C 1.39979 * 120.11982 * 156.87391 * 22 20 19 24 24 C 1.38416 * 117.96935 * 179.73874 * 23 22 20 25 25 C 1.39348 * 118.03778 * 0.53126 * 24 23 22 26 26 O 1.35515 * 120.02676 * 179.70200 * 25 24 23 27 27 N 1.32680 * 119.94409 * 359.72349 * 25 24 23 28 28 N 1.28356 * 122.19135 * 0.02562 * 27 25 24 29 29 H 1.08995 * 109.47212 * 265.82575 * 1 2 3 30 30 H 1.09003 * 109.46993 * 25.82692 * 1 2 3 31 31 H 1.09003 * 109.47151 * 145.82563 * 1 2 3 32 32 H 0.97000 * 120.00109 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.49877 * 305.53150 * 15 13 11 34 34 H 1.08997 * 109.49266 * 65.59567 * 15 13 11 35 35 H 1.08997 * 109.46027 * 181.38839 * 16 15 13 36 36 H 1.09000 * 109.46065 * 301.34889 * 16 15 13 37 37 H 1.08990 * 109.49682 * 58.58501 * 17 16 15 38 38 H 1.08996 * 109.49770 * 178.68265 * 17 16 15 39 39 H 1.09004 * 109.58105 * 174.42421 * 18 17 16 40 40 H 1.09003 * 109.58454 * 294.70307 * 18 17 16 41 41 H 1.07995 * 121.00932 * 0.02562 * 23 22 20 42 42 H 1.08005 * 120.98028 * 180.25284 * 24 23 22 43 43 H 0.96699 * 114.00187 * 270.01764 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1356 1.2420 -0.4391 5 6 1.5777 2.3202 0.5650 6 7 0.4582 2.2205 1.2460 7 14 2.3991 3.9850 0.3566 8 1 2.4929 4.3132 -1.0886 9 1 1.5952 5.0237 1.0495 10 1 3.7623 3.9413 0.9439 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0017 14 1 0.3244 -2.2815 -0.1625 15 6 1.5820 -3.1799 1.3428 16 6 0.9317 -4.5641 1.2860 17 6 1.6052 -5.4017 0.1964 18 6 1.4089 -4.7192 -1.1611 19 7 1.9009 -3.3377 -1.0713 20 6 2.8077 -2.8730 -1.9535 21 8 3.1092 -1.6956 -1.9518 22 6 3.4362 -3.7961 -2.9237 23 6 3.9782 -3.3004 -4.1153 24 6 4.5604 -4.2028 -4.9886 25 6 4.5613 -5.5503 -4.6336 26 8 5.1151 -6.4693 -5.4615 27 7 4.0192 -5.9329 -3.4846 28 7 3.4829 -5.0984 -2.6701 29 1 -0.3633 -0.0748 1.0249 30 1 -0.3633 0.9250 -0.4477 31 1 -0.3633 -0.8502 -0.5773 32 1 0.0582 3.0114 1.6401 33 1 2.6476 -3.2866 1.5454 34 1 1.1182 -2.5918 2.1346 35 1 1.0487 -5.0601 2.2495 36 1 -0.1290 -4.4580 1.0588 37 1 2.6705 -5.4874 0.4098 38 1 1.1574 -6.3951 0.1722 39 1 1.9693 -5.2578 -1.9253 40 1 0.3497 -4.7161 -1.4188 41 1 3.9472 -2.2454 -4.3440 42 1 4.9969 -3.8729 -5.9197 43 1 4.4969 -6.8424 -6.1046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318709714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:16 Heat of formation + Delta-G solvation = 4.339378 kcal Electronic energy + Delta-G solvation = -30092.787437 eV Core-core repulsion = 25948.407440 eV Total energy + Delta-G solvation = -4144.379997 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.57535 -40.14074 -38.11919 -37.38385 -36.97648 -34.41965 -33.45882 -32.89279 -31.83682 -31.40151 -30.50119 -26.57289 -25.97574 -24.98940 -24.64604 -24.12151 -23.04143 -21.29565 -19.92418 -19.48209 -18.87047 -17.83471 -17.20378 -16.64284 -16.54238 -16.00801 -15.53937 -14.93410 -14.77595 -14.62997 -14.47664 -14.18225 -14.11844 -13.75901 -13.58365 -13.44400 -13.22055 -12.93124 -12.59813 -12.41601 -12.16769 -11.92481 -11.50527 -11.21104 -11.19578 -11.02180 -10.87187 -10.72327 -10.61877 -10.54772 -10.33259 -10.29541 -10.10845 -9.88753 -9.57709 -9.18984 -8.79853 -8.32417 -8.00643 -7.36431 -6.17558 -3.74561 0.20636 0.45365 2.57306 2.96280 3.13121 3.29049 3.31464 3.36547 3.47320 3.89222 4.15408 4.20935 4.33948 4.43817 4.61212 4.68488 4.90841 5.04859 5.11335 5.23079 5.25207 5.32043 5.49194 5.53771 5.54677 5.66748 5.72423 5.88096 5.94108 6.09892 6.12431 6.14401 6.28123 6.36310 6.42602 6.62970 6.85688 6.91705 6.94323 7.27007 7.66083 7.71192 8.22700 8.33605 8.46676 8.70033 9.39363 9.59438 10.21182 10.88105 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.003863 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.929331 B = 7246.492976 C = 8735.098004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.448 5.448 3 C -0.289 4.289 4 H 0.094 0.906 5 C 0.027 3.973 6 N -0.891 5.891 7 Si 0.925 3.075 8 H -0.275 1.275 9 H -0.286 1.286 10 H -0.274 1.274 11 C 0.473 3.527 12 O -0.558 6.558 13 C 0.127 3.873 14 H 0.088 0.912 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.127 4.127 18 C 0.085 3.915 19 N -0.586 5.586 20 C 0.553 3.447 21 O -0.452 6.452 22 C 0.035 3.965 23 C -0.050 4.050 24 C -0.138 4.138 25 C 0.264 3.736 26 O -0.473 6.473 27 N -0.264 5.264 28 N -0.179 5.179 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.021 0.979 32 H 0.265 0.735 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.124 0.876 40 H 0.059 0.941 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -16.261 -10.748 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.169 5.169 3 C -0.417 4.417 4 H 0.111 0.889 5 C -0.175 4.175 6 N -0.531 5.531 7 Si 0.752 3.248 8 H -0.201 1.201 9 H -0.211 1.211 10 H -0.199 1.199 11 C 0.259 3.741 12 O -0.440 6.440 13 C 0.021 3.979 14 H 0.105 0.895 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.165 4.165 18 C -0.038 4.038 19 N -0.322 5.322 20 C 0.336 3.664 21 O -0.321 6.321 22 C -0.111 4.111 23 C -0.079 4.079 24 C -0.168 4.168 25 C 0.080 3.920 26 O -0.279 6.279 27 N -0.117 5.117 28 N -0.029 5.029 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.141 0.859 40 H 0.077 0.923 41 H 0.185 0.815 42 H 0.179 0.821 43 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -0.577 -16.542 -9.416 19.043 hybrid contribution 0.133 1.767 -1.237 2.161 sum -0.444 -14.775 -10.653 18.220 Atomic orbital electron populations 1.21487 0.81956 0.99444 1.00211 1.43339 1.04872 1.04415 1.64263 1.19531 1.02455 0.84774 1.34942 0.88851 1.25352 0.96741 1.00004 0.95414 1.69950 1.19405 1.29933 1.33833 0.86023 0.79134 0.81270 0.78377 1.20107 1.21115 1.19946 1.19416 0.87984 0.83929 0.82728 1.90528 1.13872 1.86334 1.53226 1.21449 0.98601 0.90713 0.87177 0.89460 1.21741 1.02536 0.95653 0.95673 1.21555 0.99626 0.95525 0.98900 1.21816 1.01867 0.98350 0.94510 1.22496 0.99517 0.81639 1.00181 1.47609 1.42510 1.13156 1.28879 1.17526 0.80391 0.87036 0.81473 1.91121 1.59852 1.14616 1.66481 1.23267 0.98751 0.93263 0.95856 1.22454 0.91585 1.02818 0.91073 1.22547 0.99281 0.92786 1.02204 1.20970 0.92170 0.88116 0.90759 1.84753 1.37633 1.57677 1.47853 1.73077 1.07091 1.29707 1.01785 1.73221 1.08230 1.00565 1.20859 0.93123 0.90938 0.96049 0.92500 0.90764 0.90409 0.91649 0.91883 0.91194 0.91058 0.85896 0.92313 0.81526 0.82066 0.73484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.60 8.30 59.85 0.50 3.10 16 2 N -0.45 -11.97 3.00 -122.19 -0.37 -12.34 16 3 C -0.29 -8.42 9.17 -14.93 -0.14 -8.55 16 4 H 0.09 2.90 7.50 -52.49 -0.39 2.51 16 5 C 0.03 0.73 5.12 -17.46 -0.09 0.64 16 6 N -0.89 -24.42 10.84 55.50 0.60 -23.82 16 7 Si 0.92 21.68 29.56 -169.99 -5.03 16.66 16 8 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 9 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 C 0.47 11.99 4.66 -10.98 -0.05 11.94 16 12 O -0.56 -16.23 13.64 -20.00 -0.27 -16.50 16 13 C 0.13 2.45 2.96 -68.75 -0.20 2.25 16 14 H 0.09 1.57 5.43 -51.93 -0.28 1.29 16 15 C -0.12 -1.98 5.35 -26.61 -0.14 -2.12 16 16 C -0.12 -1.49 5.88 -26.69 -0.16 -1.65 16 17 C -0.13 -1.55 6.08 -26.60 -0.16 -1.72 16 18 C 0.08 1.14 6.12 -3.71 -0.02 1.12 16 19 N -0.59 -10.35 2.97 -167.60 -0.50 -10.84 16 20 C 0.55 10.74 7.16 -12.29 -0.09 10.65 16 21 O -0.45 -10.87 11.98 -20.21 -0.24 -11.11 16 22 C 0.03 0.54 6.46 -82.84 -0.54 0.01 16 23 C -0.05 -0.62 9.72 -38.86 -0.38 -1.00 16 24 C -0.14 -1.30 10.14 -39.10 -0.40 -1.70 16 25 C 0.26 2.79 7.85 -16.77 -0.13 2.66 16 26 O -0.47 -3.76 13.56 -18.24 -0.25 -4.01 16 27 N -0.26 -3.50 11.54 30.54 0.35 -3.15 16 28 N -0.18 -2.62 7.77 33.32 0.26 -2.36 16 29 H 0.05 1.17 7.78 -51.93 -0.40 0.77 16 30 H 0.07 1.77 6.95 -51.93 -0.36 1.41 16 31 H 0.02 0.42 6.03 -51.93 -0.31 0.10 16 32 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.12 1.65 3.97 -102.41 -0.41 1.24 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.17 1.94 7.88 -52.49 -0.41 1.53 16 42 H 0.16 0.95 8.06 -52.48 -0.42 0.52 16 43 H 0.41 0.94 9.06 45.56 0.41 1.36 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -37.05 349.13 -6.85 -43.91 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.68 Total: 2.68 kcal Atomic # 6 Polarization: 17.62 SS G_CDS: -2.00 Total: 15.63 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.35 Total: -52.51 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.76 Total: -31.62 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -37.05 -6.85 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318709714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.246 kcal (2) G-P(sol) polarization free energy of solvation -37.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds