Wall clock time and date at job start Tue Mar 31 2020 17:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37093 * 119.99831 * 2 1 4 4 H 1.07996 * 119.99904 * 208.00106 * 3 2 1 5 5 C 1.38953 * 120.00146 * 28.00377 * 3 2 1 6 6 N 1.31417 * 119.99851 * 8.56130 * 5 3 2 7 7 Si 1.86800 * 120.00176 * 188.56031 * 5 3 2 8 8 H 1.48497 * 109.47038 * 60.00103 * 7 5 3 9 9 H 1.48498 * 109.46927 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47216 * 299.99889 * 7 5 3 11 11 C 1.34776 * 119.99957 * 180.02562 * 2 1 3 12 12 O 1.21291 * 119.99969 * 180.02562 * 11 2 1 13 13 C 1.50703 * 120.00003 * 0.02562 * 11 2 1 14 14 H 1.08994 * 109.58431 * 8.99633 * 13 11 2 15 15 C 1.53198 * 109.58302 * 248.71075 * 13 11 2 16 16 C 1.53035 * 109.31074 * 185.57701 * 15 13 11 17 17 C 1.53048 * 109.53838 * 61.36825 * 16 15 13 18 18 C 1.53202 * 109.30872 * 298.63360 * 17 16 15 19 19 N 1.46920 * 108.77442 * 54.63760 * 18 17 16 20 20 C 1.34771 * 120.63379 * 126.39293 * 19 18 17 21 21 O 1.21541 * 120.00439 * 172.78629 * 20 19 18 22 22 C 1.47937 * 119.99890 * 352.77796 * 20 19 18 23 23 C 1.39979 * 120.11982 * 156.87391 * 22 20 19 24 24 C 1.38416 * 117.96935 * 179.73874 * 23 22 20 25 25 C 1.39348 * 118.03778 * 0.53126 * 24 23 22 26 26 O 1.35515 * 120.02676 * 179.70200 * 25 24 23 27 27 N 1.32680 * 119.94409 * 359.72349 * 25 24 23 28 28 N 1.28356 * 122.19135 * 0.02562 * 27 25 24 29 29 H 1.08995 * 109.47212 * 265.82575 * 1 2 3 30 30 H 1.09003 * 109.46993 * 25.82692 * 1 2 3 31 31 H 1.09003 * 109.47151 * 145.82563 * 1 2 3 32 32 H 0.97000 * 120.00109 * 180.02562 * 6 5 3 33 33 H 1.08998 * 109.49877 * 305.53150 * 15 13 11 34 34 H 1.08997 * 109.49266 * 65.59567 * 15 13 11 35 35 H 1.08997 * 109.46027 * 181.38839 * 16 15 13 36 36 H 1.09000 * 109.46065 * 301.34889 * 16 15 13 37 37 H 1.08990 * 109.49682 * 58.58501 * 17 16 15 38 38 H 1.08996 * 109.49770 * 178.68265 * 17 16 15 39 39 H 1.09004 * 109.58105 * 174.42421 * 18 17 16 40 40 H 1.09003 * 109.58454 * 294.70307 * 18 17 16 41 41 H 1.07995 * 121.00932 * 0.02562 * 23 22 20 42 42 H 1.08005 * 120.98028 * 180.25284 * 24 23 22 43 43 H 0.96699 * 114.00187 * 270.01764 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1356 1.2420 -0.4391 5 6 1.5777 2.3202 0.5650 6 7 0.4582 2.2205 1.2460 7 14 2.3991 3.9850 0.3566 8 1 2.4929 4.3132 -1.0886 9 1 1.5952 5.0237 1.0495 10 1 3.7623 3.9413 0.9439 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0001 13 6 1.3854 -2.4723 -0.0017 14 1 0.3244 -2.2815 -0.1625 15 6 1.5820 -3.1799 1.3428 16 6 0.9317 -4.5641 1.2860 17 6 1.6052 -5.4017 0.1964 18 6 1.4089 -4.7192 -1.1611 19 7 1.9009 -3.3377 -1.0713 20 6 2.8077 -2.8730 -1.9535 21 8 3.1092 -1.6956 -1.9518 22 6 3.4362 -3.7961 -2.9237 23 6 3.9782 -3.3004 -4.1153 24 6 4.5604 -4.2028 -4.9886 25 6 4.5613 -5.5503 -4.6336 26 8 5.1151 -6.4693 -5.4615 27 7 4.0192 -5.9329 -3.4846 28 7 3.4829 -5.0984 -2.6701 29 1 -0.3633 -0.0748 1.0249 30 1 -0.3633 0.9250 -0.4477 31 1 -0.3633 -0.8502 -0.5773 32 1 0.0582 3.0114 1.6401 33 1 2.6476 -3.2866 1.5454 34 1 1.1182 -2.5918 2.1346 35 1 1.0487 -5.0601 2.2495 36 1 -0.1290 -4.4580 1.0588 37 1 2.6705 -5.4874 0.4098 38 1 1.1574 -6.3951 0.1722 39 1 1.9693 -5.2578 -1.9253 40 1 0.3497 -4.7161 -1.4188 41 1 3.9472 -2.2454 -4.3440 42 1 4.9969 -3.8729 -5.9197 43 1 4.4969 -6.8424 -6.1046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318709714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:15 Heat of formation + Delta-G solvation = -25.472012 kcal Electronic energy + Delta-G solvation = -30094.080156 eV Core-core repulsion = 25948.407440 eV Total energy + Delta-G solvation = -4145.672716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63530 -41.56419 -39.49818 -38.56144 -38.36574 -36.46761 -34.40087 -34.16095 -33.67203 -32.74362 -31.80520 -28.37047 -27.42631 -26.47494 -25.80643 -25.37938 -24.46606 -22.57538 -21.33995 -20.42086 -20.08671 -19.11086 -18.75801 -18.38303 -17.75722 -17.44859 -16.96594 -16.61510 -16.06464 -16.03125 -15.81046 -15.55113 -15.47086 -15.03942 -14.98316 -14.58469 -14.51866 -14.38424 -14.02579 -13.75221 -13.41872 -13.30251 -13.20338 -13.09905 -12.77334 -12.67048 -12.46216 -12.17915 -12.13594 -11.94110 -11.68588 -11.62082 -11.37812 -11.02964 -10.86029 -10.66867 -10.49462 -10.09595 -9.66018 -9.39133 -8.28012 -5.93783 -0.77057 -0.45662 1.36928 1.38237 1.43623 1.49226 1.65738 2.24408 2.26548 2.29865 2.42600 2.80634 3.04322 3.13934 3.36912 3.54232 3.69041 3.84107 3.86937 3.93827 4.01760 4.11867 4.18799 4.30095 4.43484 4.54382 4.64650 4.71039 4.79492 4.85270 4.91756 4.98183 5.05174 5.11374 5.16668 5.26456 5.35421 5.47825 5.49574 5.56988 6.19751 6.30259 6.47023 6.58356 7.02449 7.28546 7.32211 7.56557 8.21235 8.75506 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014938 B = 0.003863 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.929331 B = 7246.492976 C = 8735.098004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.468 5.468 3 C -0.328 4.328 4 H 0.057 0.943 5 C -0.004 4.004 6 N -0.901 5.901 7 Si 0.985 3.015 8 H -0.270 1.270 9 H -0.266 1.266 10 H -0.281 1.281 11 C 0.466 3.534 12 O -0.605 6.605 13 C 0.133 3.867 14 H 0.106 0.894 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.123 4.123 18 C 0.079 3.921 19 N -0.585 5.585 20 C 0.545 3.455 21 O -0.515 6.515 22 C 0.012 3.988 23 C -0.059 4.059 24 C -0.112 4.112 25 C 0.279 3.721 26 O -0.472 6.472 27 N -0.285 5.285 28 N -0.185 5.185 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.272 0.728 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.166 0.834 42 H 0.205 0.795 43 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -18.446 -12.144 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.189 5.189 3 C -0.456 4.456 4 H 0.075 0.925 5 C -0.205 4.205 6 N -0.540 5.540 7 Si 0.809 3.191 8 H -0.195 1.195 9 H -0.190 1.190 10 H -0.207 1.207 11 C 0.256 3.744 12 O -0.490 6.490 13 C 0.027 3.973 14 H 0.124 0.876 15 C -0.153 4.153 16 C -0.146 4.146 17 C -0.161 4.161 18 C -0.042 4.042 19 N -0.320 5.320 20 C 0.330 3.670 21 O -0.388 6.388 22 C -0.134 4.134 23 C -0.087 4.087 24 C -0.141 4.141 25 C 0.095 3.905 26 O -0.282 6.282 27 N -0.138 5.138 28 N -0.034 5.034 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.104 0.896 41 H 0.183 0.817 42 H 0.222 0.778 43 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges -1.769 -18.803 -10.828 21.770 hybrid contribution 0.568 2.290 -0.918 2.531 sum -1.202 -16.513 -11.746 20.300 Atomic orbital electron populations 1.21413 0.80024 1.00052 1.00375 1.43590 1.06174 1.04325 1.64831 1.19366 1.02096 0.87064 1.37091 0.92518 1.26044 0.97266 1.02680 0.94503 1.70010 1.19680 1.31064 1.33269 0.85129 0.77934 0.77354 0.78647 1.19494 1.18995 1.20680 1.20358 0.87857 0.85547 0.80673 1.90476 1.16330 1.87402 1.54803 1.21321 0.98312 0.88324 0.89379 0.87618 1.21753 1.01155 0.98441 0.93951 1.21547 1.00340 0.92380 1.00298 1.21827 1.00961 0.99955 0.93372 1.22827 1.00921 0.79170 1.01310 1.47818 1.41989 1.14513 1.27678 1.18138 0.80139 0.86991 0.81774 1.91082 1.61793 1.17301 1.68671 1.22781 1.00896 0.93351 0.96368 1.22533 0.92007 1.03437 0.90771 1.22890 0.97122 0.91527 1.02609 1.21079 0.90231 0.89075 0.90141 1.84719 1.38338 1.57125 1.48031 1.73002 1.08288 1.29470 1.03020 1.73146 1.08822 0.99993 1.21480 0.93470 0.92731 0.92445 0.91871 0.93842 0.90699 0.89532 0.89497 0.93280 0.87308 0.85535 0.89628 0.81683 0.77802 0.70258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.83 8.30 127.77 1.06 6.89 16 2 N -0.47 -26.23 3.00 -658.88 -1.98 -28.21 16 3 C -0.33 -20.21 9.17 84.04 0.77 -19.44 16 4 H 0.06 3.83 7.50 -2.91 -0.02 3.80 16 5 C 0.00 -0.24 5.12 84.93 0.43 0.20 16 6 N -0.90 -49.95 10.84 21.66 0.23 -49.71 16 7 Si 0.99 45.45 29.56 68.60 2.03 47.48 16 8 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 C 0.47 25.01 4.66 87.66 0.41 25.42 16 12 O -0.61 -37.94 13.64 21.36 0.29 -37.65 16 13 C 0.13 5.24 2.96 44.23 0.13 5.37 16 14 H 0.11 3.71 5.43 -2.39 -0.01 3.69 16 15 C -0.11 -3.88 5.35 30.67 0.16 -3.71 16 16 C -0.11 -2.44 5.88 30.62 0.18 -2.26 16 17 C -0.12 -2.71 6.08 30.68 0.19 -2.52 16 18 C 0.08 1.99 6.12 86.37 0.53 2.52 16 19 N -0.59 -20.93 2.97 -802.44 -2.38 -23.31 16 20 C 0.54 22.18 7.16 86.81 0.62 22.80 16 21 O -0.52 -26.65 11.98 20.58 0.25 -26.40 16 22 C 0.01 0.39 6.46 42.00 0.27 0.66 16 23 C -0.06 -1.44 9.72 22.73 0.22 -1.22 16 24 C -0.11 -1.80 10.14 22.58 0.23 -1.57 16 25 C 0.28 5.11 7.85 84.83 0.67 5.77 16 26 O -0.47 -5.70 13.56 -88.17 -1.20 -6.90 16 27 N -0.28 -7.06 11.54 -170.01 -1.96 -9.02 16 28 N -0.19 -5.30 7.77 -48.50 -0.38 -5.68 16 29 H 0.05 2.20 7.78 -2.39 -0.02 2.18 16 30 H 0.05 2.71 6.95 -2.39 -0.02 2.69 16 31 H 0.06 2.21 6.03 -2.39 -0.01 2.20 16 32 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.13 3.22 3.97 -67.69 -0.27 2.95 16 40 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.17 4.02 7.88 -2.91 -0.02 3.99 16 42 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.43 0.15 9.06 -74.06 -0.67 -0.52 16 Total: -1.00 -88.15 349.13 0.92 -87.23 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.14 Total: 13.28 kcal Atomic # 6 Polarization: 33.02 SS G_CDS: 5.87 Total: 38.90 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -6.47 Total: -115.94 kcal Atomic # 8 Polarization: -70.29 SS G_CDS: -0.66 Total: -70.94 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -88.15 0.92 -87.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318709714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.757 kcal (2) G-P(sol) polarization free energy of solvation -88.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds