Wall clock time and date at job start Tue Mar 31 2020 17:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00397 * 2 1 4 4 C 1.52994 * 109.47188 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46972 * 60.39992 * 4 3 2 6 6 C 1.46899 * 110.99788 * 183.42238 * 5 4 3 7 7 C 1.50702 * 109.47143 * 163.74393 * 6 5 4 8 8 O 1.21286 * 119.99718 * 354.25503 * 7 6 5 9 9 N 1.34775 * 120.00051 * 174.25300 * 7 6 5 10 10 C 1.46502 * 120.00217 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47344 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00134 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99968 * 180.27340 * 11 10 9 14 14 N 1.31519 * 120.00168 * 359.73229 * 13 11 10 15 15 Si 1.86797 * 120.00211 * 179.72532 * 13 11 10 16 16 H 1.48496 * 109.47243 * 90.00307 * 15 13 11 17 17 H 1.48498 * 109.47410 * 210.00627 * 15 13 11 18 18 H 1.48505 * 109.47153 * 330.00247 * 15 13 11 19 19 C 1.46899 * 111.00187 * 59.46860 * 5 4 3 20 20 H 1.09002 * 109.64065 * 150.39045 * 19 5 4 21 21 C 1.53877 * 109.64584 * 270.68457 * 19 5 4 22 22 C 1.55053 * 106.62274 * 167.03470 * 21 19 5 23 23 S 1.83288 * 102.56402 * 317.56672 * 22 21 19 24 24 O 1.42108 * 109.35093 * 269.81242 * 23 22 21 25 25 O 1.42100 * 109.47326 * 136.65234 * 23 22 21 26 26 C 1.54166 * 109.64590 * 29.96190 * 19 5 4 27 27 H 1.08996 * 109.47491 * 59.99678 * 1 2 3 28 28 H 1.09000 * 109.47448 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46852 * 299.99820 * 1 2 3 30 30 H 1.09004 * 109.46604 * 60.00116 * 3 2 1 31 31 H 1.09003 * 109.46978 * 300.00537 * 3 2 1 32 32 H 1.09000 * 109.47166 * 300.39467 * 4 3 2 33 33 H 1.09003 * 109.46862 * 180.39546 * 4 3 2 34 34 H 1.08997 * 109.47278 * 43.74408 * 6 5 4 35 35 H 1.08997 * 109.47425 * 283.74188 * 6 5 4 36 36 H 0.97003 * 120.00269 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.46830 * 59.99985 * 10 9 7 38 38 H 1.09004 * 109.46807 * 300.00806 * 10 9 7 39 39 H 0.96997 * 120.00243 * 179.97438 * 14 13 11 40 40 H 1.09000 * 110.02477 * 286.32397 * 21 19 5 41 41 H 1.09000 * 110.02744 * 47.74170 * 21 19 5 42 42 H 1.09001 * 110.78869 * 199.29635 * 22 21 19 43 43 H 1.09000 * 110.78584 * 75.83585 * 22 21 19 44 44 H 1.09001 * 110.31532 * 331.13229 * 26 19 5 45 45 H 1.09000 * 110.32112 * 93.23660 * 26 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9690 0.4641 -1.2052 6 6 5.4234 0.2576 -1.2002 7 6 5.7838 -0.8023 -2.2091 8 8 4.9089 -1.4068 -2.7923 9 7 7.0783 -1.0784 -2.4633 10 6 7.4286 -2.1091 -3.4437 11 6 8.9283 -2.2218 -3.5399 12 1 9.5575 -1.5893 -2.9313 13 6 9.4971 -3.1289 -4.4086 14 7 8.7309 -3.8994 -5.1495 15 14 11.3560 -3.2634 -4.5335 16 1 11.8464 -4.2681 -3.5562 17 1 11.7307 -3.6850 -5.9071 18 1 11.9689 -1.9437 -4.2364 19 6 3.5414 1.1675 -2.4219 20 1 4.2507 0.9724 -3.2263 21 6 2.1434 0.6775 -2.8384 22 6 1.6233 1.6754 -3.9051 23 16 2.1138 3.2974 -3.2065 24 8 1.0647 3.7933 -2.3861 25 8 2.6523 4.1138 -4.2373 26 6 3.4727 2.6829 -2.1474 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8900 32 1 3.8569 0.6373 0.8855 33 1 3.9788 2.1803 0.0064 34 1 5.7416 -0.0622 -0.2079 35 1 5.9238 1.1906 -1.4590 36 1 7.7780 -0.5951 -1.9966 37 1 7.0211 -1.8377 -4.4175 38 1 7.0120 -3.0660 -3.1294 39 1 9.1310 -4.5373 -5.7609 40 1 2.2104 -0.3234 -3.2648 41 1 1.4773 0.6724 -1.9757 42 1 0.5397 1.6077 -4.0024 43 1 2.1105 1.5043 -4.8650 44 1 3.2470 2.8675 -1.0971 45 1 4.4136 3.1603 -2.4214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319554252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:36 Heat of formation + Delta-G solvation = -114.477019 kcal Electronic energy + Delta-G solvation = -28296.046017 eV Core-core repulsion = 24249.664955 eV Total energy + Delta-G solvation = -4046.381062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.26161 -38.49981 -37.27325 -37.15074 -36.26594 -34.24458 -34.06014 -32.33960 -30.81531 -29.66719 -27.83486 -26.55305 -26.04125 -24.78027 -22.48225 -22.16581 -20.56206 -19.66084 -19.11033 -17.84499 -17.36449 -17.12172 -16.61227 -16.01853 -15.85706 -15.71723 -15.43800 -15.20799 -14.97878 -14.72619 -14.33607 -14.26821 -14.15281 -13.61562 -13.37051 -12.92008 -12.79211 -12.50012 -12.41484 -12.30886 -12.29139 -12.13928 -12.03937 -11.92046 -11.66750 -11.41920 -11.19725 -10.99999 -10.92160 -10.87456 -10.80315 -10.44018 -10.33490 -9.81027 -9.42028 -9.10280 -8.75174 -8.40126 -7.89035 -6.18854 -4.25857 -0.22320 2.24647 3.22442 3.23587 3.28936 3.30868 3.35258 3.39627 3.57060 3.71761 4.11181 4.16416 4.34400 4.43807 4.48589 4.60303 4.67600 4.76057 4.84499 5.03194 5.06971 5.15665 5.17236 5.18090 5.23504 5.24813 5.33166 5.40302 5.48231 5.53679 5.55198 5.60561 5.85713 6.13112 6.73802 6.75632 7.02168 7.29416 7.42112 7.49865 7.64964 7.95087 8.61009 8.76857 9.09696 9.41086 10.91264 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.016265 B = 0.002916 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.045947 B = 9599.795751 C =10414.921544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.363 6.363 3 C 0.049 3.951 4 C 0.044 3.956 5 N -0.488 5.488 6 C 0.030 3.970 7 C 0.495 3.505 8 O -0.533 6.533 9 N -0.716 5.716 10 C 0.252 3.748 11 C -0.544 4.544 12 H 0.062 0.938 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.100 3.900 20 H 0.104 0.896 21 C -0.118 4.118 22 C -0.584 4.584 23 S 2.382 3.618 24 O -0.941 6.941 25 O -0.940 6.940 26 C -0.656 4.656 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.389 0.611 37 H 0.026 0.974 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.153 0.847 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.481 13.783 10.459 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.281 6.281 3 C -0.028 4.028 4 C -0.083 4.083 5 N -0.211 5.211 6 C -0.101 4.101 7 C 0.279 3.721 8 O -0.410 6.410 9 N -0.366 5.366 10 C 0.131 3.869 11 C -0.582 4.582 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.522 5.522 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.010 4.010 20 H 0.122 0.878 21 C -0.157 4.157 22 C -0.715 4.715 23 S 2.566 3.434 24 O -0.938 6.938 25 O -0.937 6.937 26 C -0.786 4.786 27 H 0.060 0.940 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.221 0.779 37 H 0.044 0.956 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.170 0.830 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.555 13.466 9.734 22.760 hybrid contribution 1.958 0.342 0.206 1.998 sum -13.597 13.807 9.940 21.779 Atomic orbital electron populations 1.22820 0.81623 1.02999 0.99905 1.88105 1.18882 1.26183 1.94914 1.22883 0.93329 0.86139 1.00472 1.22405 0.93937 0.97777 0.94203 1.61624 1.12025 1.47202 1.00255 1.22135 0.88296 0.98448 1.01190 1.20261 0.83609 0.84517 0.83734 1.90668 1.48013 1.51414 1.50921 1.46470 1.05733 1.40775 1.43575 1.19075 0.95294 0.85739 0.86768 1.21221 0.90937 1.21776 1.24284 0.91957 1.24950 0.98789 0.95172 0.95095 1.69971 1.35317 1.22404 1.24541 0.86422 0.84564 0.78449 0.77502 1.20461 1.21010 1.19777 1.22154 0.99088 0.84833 0.94921 0.87800 1.22593 0.94854 1.01153 0.97088 1.30630 1.11326 1.19441 1.10152 1.09211 0.77866 0.78865 0.77506 1.93604 1.53461 1.78228 1.68475 1.93615 1.79252 1.65233 1.55588 1.31551 1.20133 1.09403 1.17500 0.94031 0.89352 0.94186 0.92335 0.93155 0.88807 0.92028 0.87834 0.92023 0.77883 0.95624 0.95548 0.92436 0.86832 0.88077 0.84400 0.84090 0.82961 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.64 101.05 1.08 1.27 16 2 O -0.36 -4.01 9.44 -35.23 -0.33 -4.35 16 3 C 0.05 0.44 4.61 37.15 0.17 0.61 16 4 C 0.04 0.40 4.80 -3.83 -0.02 0.38 16 5 N -0.49 -5.88 3.93 -226.81 -0.89 -6.77 16 6 C 0.03 0.38 5.38 -4.98 -0.03 0.35 16 7 C 0.50 9.07 7.17 -10.99 -0.08 8.99 16 8 O -0.53 -11.87 15.64 5.55 0.09 -11.79 16 9 N -0.72 -14.14 5.55 -61.47 -0.34 -14.48 16 10 C 0.25 6.47 5.43 -5.20 -0.03 6.44 16 11 C -0.54 -14.42 9.28 -34.44 -0.32 -14.74 16 12 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 15 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 19 C 0.10 1.13 1.91 -66.65 -0.13 1.00 16 20 H 0.10 1.34 6.84 -51.93 -0.36 0.98 16 21 C -0.12 -1.27 5.58 -25.19 -0.14 -1.41 16 22 C -0.58 -4.98 7.31 38.24 0.28 -4.70 16 23 S 2.38 23.20 5.74 -107.50 -0.62 22.58 16 24 O -0.94 -11.12 17.54 -57.73 -1.01 -12.13 16 25 O -0.94 -12.54 18.15 -57.73 -1.05 -13.59 16 26 C -0.66 -5.53 5.54 37.77 0.21 -5.32 16 27 H 0.04 0.31 7.58 -51.93 -0.39 -0.08 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.44 3.29 -51.93 -0.17 0.27 16 32 H 0.09 0.80 8.01 -51.93 -0.42 0.38 16 33 H 0.06 0.41 5.96 -51.93 -0.31 0.10 16 34 H 0.10 1.09 7.90 -51.93 -0.41 0.68 16 35 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 36 H 0.39 6.50 8.32 -40.82 -0.34 6.16 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.10 1.03 2.82 -51.93 -0.15 0.88 16 42 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.15 1.05 3.82 -51.93 -0.20 0.86 16 45 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 365.00 15.07 5.50 5.50 Total: -1.00 -36.99 365.00 -8.54 -45.53 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.50 Total: 4.44 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 0.90 Total: -5.48 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.50 Total: -46.24 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -2.31 Total: -41.86 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 23.20 SS G_CDS: -0.62 Total: 22.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.99 -8.54 -45.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319554252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.946 kcal (2) G-P(sol) polarization free energy of solvation -36.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds