Wall clock time and date at job start Tue Mar 31 2020 17:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00397 * 2 1 4 4 C 1.52994 * 109.47188 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46972 * 60.39992 * 4 3 2 6 6 C 1.46899 * 110.99788 * 183.42238 * 5 4 3 7 7 C 1.50702 * 109.47143 * 163.74393 * 6 5 4 8 8 O 1.21286 * 119.99718 * 354.25503 * 7 6 5 9 9 N 1.34775 * 120.00051 * 174.25300 * 7 6 5 10 10 C 1.46502 * 120.00217 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47344 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00134 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99968 * 180.27340 * 11 10 9 14 14 N 1.31519 * 120.00168 * 359.73229 * 13 11 10 15 15 Si 1.86797 * 120.00211 * 179.72532 * 13 11 10 16 16 H 1.48496 * 109.47243 * 90.00307 * 15 13 11 17 17 H 1.48498 * 109.47410 * 210.00627 * 15 13 11 18 18 H 1.48505 * 109.47153 * 330.00247 * 15 13 11 19 19 C 1.46899 * 111.00187 * 59.46860 * 5 4 3 20 20 H 1.09002 * 109.64065 * 150.39045 * 19 5 4 21 21 C 1.53877 * 109.64584 * 270.68457 * 19 5 4 22 22 C 1.55053 * 106.62274 * 167.03470 * 21 19 5 23 23 S 1.83288 * 102.56402 * 317.56672 * 22 21 19 24 24 O 1.42108 * 109.35093 * 269.81242 * 23 22 21 25 25 O 1.42100 * 109.47326 * 136.65234 * 23 22 21 26 26 C 1.54166 * 109.64590 * 29.96190 * 19 5 4 27 27 H 1.08996 * 109.47491 * 59.99678 * 1 2 3 28 28 H 1.09000 * 109.47448 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46852 * 299.99820 * 1 2 3 30 30 H 1.09004 * 109.46604 * 60.00116 * 3 2 1 31 31 H 1.09003 * 109.46978 * 300.00537 * 3 2 1 32 32 H 1.09000 * 109.47166 * 300.39467 * 4 3 2 33 33 H 1.09003 * 109.46862 * 180.39546 * 4 3 2 34 34 H 1.08997 * 109.47278 * 43.74408 * 6 5 4 35 35 H 1.08997 * 109.47425 * 283.74188 * 6 5 4 36 36 H 0.97003 * 120.00269 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.46830 * 59.99985 * 10 9 7 38 38 H 1.09004 * 109.46807 * 300.00806 * 10 9 7 39 39 H 0.96997 * 120.00243 * 179.97438 * 14 13 11 40 40 H 1.09000 * 110.02477 * 286.32397 * 21 19 5 41 41 H 1.09000 * 110.02744 * 47.74170 * 21 19 5 42 42 H 1.09001 * 110.78869 * 199.29635 * 22 21 19 43 43 H 1.09000 * 110.78584 * 75.83585 * 22 21 19 44 44 H 1.09001 * 110.31532 * 331.13229 * 26 19 5 45 45 H 1.09000 * 110.32112 * 93.23660 * 26 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9690 0.4641 -1.2052 6 6 5.4234 0.2576 -1.2002 7 6 5.7838 -0.8023 -2.2091 8 8 4.9089 -1.4068 -2.7923 9 7 7.0783 -1.0784 -2.4633 10 6 7.4286 -2.1091 -3.4437 11 6 8.9283 -2.2218 -3.5399 12 1 9.5575 -1.5893 -2.9313 13 6 9.4971 -3.1289 -4.4086 14 7 8.7309 -3.8994 -5.1495 15 14 11.3560 -3.2634 -4.5335 16 1 11.8464 -4.2681 -3.5562 17 1 11.7307 -3.6850 -5.9071 18 1 11.9689 -1.9437 -4.2364 19 6 3.5414 1.1675 -2.4219 20 1 4.2507 0.9724 -3.2263 21 6 2.1434 0.6775 -2.8384 22 6 1.6233 1.6754 -3.9051 23 16 2.1138 3.2974 -3.2065 24 8 1.0647 3.7933 -2.3861 25 8 2.6523 4.1138 -4.2373 26 6 3.4727 2.6829 -2.1474 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8464 -0.8900 32 1 3.8569 0.6373 0.8855 33 1 3.9788 2.1803 0.0064 34 1 5.7416 -0.0622 -0.2079 35 1 5.9238 1.1906 -1.4590 36 1 7.7780 -0.5951 -1.9966 37 1 7.0211 -1.8377 -4.4175 38 1 7.0120 -3.0660 -3.1294 39 1 9.1310 -4.5373 -5.7609 40 1 2.2104 -0.3234 -3.2648 41 1 1.4773 0.6724 -1.9757 42 1 0.5397 1.6077 -4.0024 43 1 2.1105 1.5043 -4.8650 44 1 3.2470 2.8675 -1.0971 45 1 4.4136 3.1603 -2.4214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319554252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:34 Heat of formation + Delta-G solvation = -147.047479 kcal Electronic energy + Delta-G solvation = -28297.458378 eV Core-core repulsion = 24249.664955 eV Total energy + Delta-G solvation = -4047.793424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.21657 -39.82778 -38.16222 -37.97933 -37.15715 -36.03119 -34.99584 -34.27269 -31.71342 -30.41005 -29.52025 -27.36999 -27.10071 -25.73492 -24.27431 -22.96570 -21.55966 -21.08392 -19.91553 -18.92671 -18.56024 -18.14580 -17.48256 -17.33445 -16.99187 -16.80631 -16.56691 -16.37961 -16.15610 -15.69867 -15.58642 -15.26210 -15.06591 -14.68879 -14.53457 -14.22714 -13.92626 -13.75387 -13.61750 -13.38777 -13.23135 -13.18107 -13.03566 -12.90202 -12.75807 -12.68560 -12.55460 -12.33448 -12.21226 -11.91770 -11.71811 -11.60872 -11.46006 -11.25694 -10.77827 -10.62689 -10.48155 -9.73216 -9.25916 -8.27468 -6.43546 -1.00064 1.44035 1.46019 1.48333 1.57037 1.90017 2.26390 2.42512 2.54658 2.84004 2.93824 3.07269 3.07672 3.34525 3.66407 3.75445 3.80837 3.96808 4.00568 4.06312 4.19639 4.34961 4.37619 4.44357 4.52069 4.53136 4.58159 4.60600 4.68048 4.78693 4.88294 4.95807 5.05378 5.16069 5.23315 5.29210 5.52817 5.73774 5.87970 5.91045 6.00101 6.37110 6.68672 7.03368 7.26498 7.62106 8.84545 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.016265 B = 0.002916 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.045947 B = 9599.795751 C =10414.921544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.391 6.391 3 C 0.040 3.960 4 C 0.040 3.960 5 N -0.513 5.513 6 C 0.044 3.956 7 C 0.490 3.510 8 O -0.580 6.580 9 N -0.712 5.712 10 C 0.269 3.731 11 C -0.554 4.554 12 H 0.084 0.916 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.982 3.018 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.255 1.255 19 C 0.096 3.904 20 H 0.081 0.919 21 C -0.119 4.119 22 C -0.578 4.578 23 S 2.397 3.603 24 O -0.960 6.960 25 O -0.978 6.978 26 C -0.638 4.638 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.407 0.593 37 H -0.014 1.014 38 H -0.016 1.016 39 H 0.268 0.732 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.159 0.841 43 H 0.144 0.856 44 H 0.175 0.825 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.312 15.850 12.595 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.310 6.310 3 C -0.037 4.037 4 C -0.086 4.086 5 N -0.237 5.237 6 C -0.087 4.087 7 C 0.277 3.723 8 O -0.459 6.459 9 N -0.364 5.364 10 C 0.146 3.854 11 C -0.592 4.592 12 H 0.102 0.898 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.806 3.194 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.179 1.179 19 C -0.015 4.015 20 H 0.099 0.901 21 C -0.158 4.158 22 C -0.709 4.709 23 S 2.583 3.417 24 O -0.957 6.957 25 O -0.975 6.975 26 C -0.770 4.770 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.149 0.851 35 H 0.115 0.885 36 H 0.243 0.757 37 H 0.004 0.996 38 H 0.002 0.998 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.128 0.872 42 H 0.177 0.823 43 H 0.163 0.837 44 H 0.192 0.808 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.401 15.597 11.909 24.341 hybrid contribution 1.489 -0.364 -0.433 1.593 sum -12.912 15.233 11.476 23.032 Atomic orbital electron populations 1.22955 0.80648 1.03477 1.00887 1.88068 1.20187 1.27625 1.95126 1.23086 0.93405 0.85635 1.01555 1.22587 0.94022 0.99214 0.92800 1.61534 1.11703 1.48895 1.01527 1.22058 0.89256 0.97354 0.99997 1.21433 0.82198 0.84883 0.83822 1.90651 1.49144 1.53327 1.52794 1.46194 1.07342 1.39931 1.42901 1.18457 0.95107 0.85491 0.86312 1.21638 0.91278 1.21919 1.24352 0.89808 1.26048 1.04425 0.94631 0.94542 1.70138 1.37903 1.23404 1.25567 0.85191 0.77676 0.79225 0.77329 1.19696 1.21160 1.17853 1.22087 0.98489 0.86579 0.94318 0.90060 1.22545 0.95379 1.00065 0.97831 1.30613 1.12825 1.17796 1.09701 1.08636 0.77638 0.78540 0.76861 1.93573 1.54447 1.78982 1.68698 1.93568 1.79916 1.66863 1.57158 1.31443 1.20238 1.07026 1.18280 0.93567 0.89294 0.92635 0.90018 0.93199 0.88074 0.88804 0.85096 0.88546 0.75730 0.99584 0.99829 0.92355 0.89818 0.87231 0.82285 0.83745 0.80765 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.64 113.37 1.21 1.46 16 2 O -0.39 -8.12 9.44 -148.98 -1.41 -9.53 16 3 C 0.04 0.61 4.61 71.98 0.33 0.94 16 4 C 0.04 0.58 4.80 86.30 0.41 0.99 16 5 N -0.51 -11.35 3.93 -871.49 -3.43 -14.77 16 6 C 0.04 0.98 5.38 85.56 0.46 1.44 16 7 C 0.49 17.95 7.17 87.66 0.63 18.58 16 8 O -0.58 -26.97 15.64 -3.05 -0.05 -27.02 16 9 N -0.71 -28.23 5.55 -466.78 -2.59 -30.82 16 10 C 0.27 14.43 5.43 85.63 0.46 14.90 16 11 C -0.55 -29.52 9.28 25.60 0.24 -29.29 16 12 H 0.08 4.00 7.60 -2.91 -0.02 3.98 16 13 C 0.00 0.17 5.46 84.65 0.46 0.63 16 14 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 15 Si 0.98 41.81 29.54 68.60 2.03 43.84 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 17 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 18 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 19 C 0.10 2.05 1.91 45.61 0.09 2.13 16 20 H 0.08 2.10 6.84 -2.39 -0.02 2.08 16 21 C -0.12 -2.57 5.58 31.59 0.18 -2.39 16 22 C -0.58 -9.60 7.31 72.69 0.53 -9.07 16 23 S 2.40 43.58 5.74 -56.49 -0.32 43.25 16 24 O -0.96 -21.12 17.54 -127.47 -2.24 -23.35 16 25 O -0.98 -25.44 18.15 -127.47 -2.31 -27.76 16 26 C -0.64 -9.05 5.54 72.38 0.40 -8.65 16 27 H 0.05 0.64 7.58 -2.39 -0.02 0.62 16 28 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.75 3.29 -2.39 -0.01 0.74 16 32 H 0.10 1.35 8.01 -2.39 -0.02 1.33 16 33 H 0.09 0.75 5.96 -2.39 -0.01 0.74 16 34 H 0.13 2.26 7.90 -2.39 -0.02 2.24 16 35 H 0.10 1.53 8.05 -2.39 -0.02 1.51 16 36 H 0.41 12.97 8.32 -92.71 -0.77 12.19 16 37 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 39 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.11 2.16 2.82 -2.39 -0.01 2.15 16 42 H 0.16 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.18 1.71 3.82 -2.39 -0.01 1.70 16 45 H 0.16 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -84.30 365.00 -4.38 -88.68 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.25 Total: 21.35 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.40 Total: -8.31 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -5.73 Total: -101.16 kcal Atomic # 8 Polarization: -81.65 SS G_CDS: -6.00 Total: -87.66 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 43.58 SS G_CDS: -0.32 Total: 43.25 kcal Total: -84.30 -4.38 -88.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319554252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.368 kcal (2) G-P(sol) polarization free energy of solvation -84.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds