Wall clock time and date at job start Tue Mar 31 2020 17:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35639 * 117.00096 * 2 1 4 4 C 1.40759 * 120.33030 * 0.02562 * 3 2 1 5 5 C 1.35011 * 120.04148 * 179.97438 * 4 3 2 6 6 N 1.36031 * 120.86026 * 0.25275 * 5 4 3 7 7 C 1.36669 * 120.88778 * 359.48456 * 6 5 4 8 8 C 1.37980 * 120.32948 * 179.97438 * 3 2 1 9 9 N 1.33329 * 108.60925 * 180.29041 * 7 6 5 10 10 C 1.32330 * 109.85082 * 359.56924 * 9 7 6 11 11 C 1.38501 * 108.25879 * 0.57781 * 10 9 7 12 12 C 1.41657 * 126.78719 * 179.53565 * 11 10 9 13 13 O 1.21800 * 119.99746 * 174.91976 * 12 11 10 14 14 N 1.34770 * 120.00127 * 354.93075 * 12 11 10 15 15 C 1.46497 * 119.99902 * 185.04755 * 14 12 11 16 16 C 1.52997 * 109.47120 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.47574 * 305.00362 * 16 15 14 18 18 O 1.42906 * 109.47246 * 65.00038 * 16 15 14 19 19 C 1.53004 * 109.47351 * 184.99953 * 16 15 14 20 20 N 1.46495 * 109.47193 * 180.02562 * 19 16 15 21 21 C 1.36941 * 119.99883 * 179.97438 * 20 19 16 22 22 H 1.08000 * 120.00056 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99766 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00179 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99753 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46920 * 90.00256 * 25 23 21 27 27 H 1.48495 * 109.47221 * 210.00633 * 25 23 21 28 28 H 1.48498 * 109.47261 * 330.00671 * 25 23 21 29 29 H 1.08993 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47158 * 300.00110 * 1 2 3 31 31 H 1.09001 * 109.47300 * 59.99563 * 1 2 3 32 32 H 1.07994 * 119.98384 * 359.95928 * 4 3 2 33 33 H 1.08003 * 119.57257 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.39278 * 359.97438 * 8 3 2 35 35 H 1.08000 * 125.86675 * 180.10096 * 10 9 7 36 36 H 0.97002 * 119.99842 * 5.04197 * 14 12 11 37 37 H 1.08993 * 109.47226 * 299.99702 * 15 14 12 38 38 H 1.09003 * 109.47040 * 59.99720 * 15 14 12 39 39 H 0.96705 * 113.99463 * 60.00006 * 18 16 15 40 40 H 1.08997 * 109.47050 * 300.00239 * 19 16 15 41 41 H 1.09005 * 109.47096 * 60.00160 * 19 16 15 42 42 H 0.97000 * 120.00286 * 0.02562 * 20 19 16 43 43 H 0.96992 * 119.99931 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2850 2.3935 0.0005 5 6 1.9041 3.5933 0.0011 6 7 3.2617 3.6780 -0.0041 7 6 4.0350 2.5512 0.0006 8 6 3.4223 1.2887 0.0005 9 7 5.3176 2.9153 0.0003 10 6 5.4100 4.2353 -0.0138 11 6 4.1282 4.7601 -0.0099 12 6 3.7729 6.1313 -0.0120 13 8 2.6027 6.4571 -0.1015 14 7 4.7297 7.0755 0.0846 15 6 4.3566 8.4880 0.1938 16 6 5.6214 9.3436 0.2898 17 1 6.2365 8.9913 1.1178 18 8 6.3598 9.2408 -0.9294 19 6 5.2323 10.8039 0.5288 20 7 6.4433 11.6232 0.6201 21 6 6.3428 12.9723 0.8326 22 1 5.3708 13.4322 0.9333 23 6 7.4903 13.7486 0.9197 24 7 8.6749 13.1881 0.7975 25 14 7.3532 15.5887 1.2102 26 1 7.3577 15.8610 2.6700 27 1 8.5051 16.2774 0.5747 28 1 6.0878 16.0906 0.6170 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2063 2.3429 0.0003 33 1 1.3137 4.4977 0.0011 34 1 4.0219 0.3904 0.0014 35 1 6.3272 4.8055 -0.0189 36 1 5.6655 6.8198 0.0820 37 1 3.7848 8.7818 -0.6864 38 1 3.7499 8.6355 1.0872 39 1 5.8728 9.5379 -1.7103 40 1 4.6173 11.1562 -0.2993 41 1 4.6691 10.8824 1.4587 42 1 7.3163 11.2103 0.5293 43 1 9.4767 13.7305 0.8580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320248654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:15 Heat of formation + Delta-G solvation = -15.499138 kcal Electronic energy + Delta-G solvation = -27266.617550 eV Core-core repulsion = 23121.377290 eV Total energy + Delta-G solvation = -4145.240260 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.26795 -40.23895 -39.54838 -37.61433 -36.93325 -34.49017 -34.01055 -33.55520 -31.40732 -30.92685 -30.21753 -28.76400 -27.59737 -25.54116 -24.38353 -23.70389 -22.49850 -22.40505 -21.44990 -20.65957 -18.77681 -18.51515 -17.51479 -17.18043 -16.85803 -16.79471 -16.33265 -16.20627 -15.82922 -15.52802 -15.15726 -14.76208 -14.54164 -14.46798 -14.34609 -13.81384 -13.80164 -13.54442 -13.14260 -13.00622 -12.77308 -12.59808 -12.35117 -12.09735 -11.98447 -11.88143 -10.96910 -10.83090 -10.76192 -10.63353 -10.48976 -10.18989 -10.14825 -9.82714 -9.53827 -9.42771 -9.22196 -8.91438 -8.04954 -6.94977 -5.76995 -3.06827 0.19558 0.42209 1.88847 1.94823 2.44135 3.01363 3.15460 3.19316 3.43124 3.48180 3.50029 3.86468 3.96016 4.07192 4.40195 4.46814 4.52657 4.53197 4.55498 4.66516 4.70873 4.83973 4.87270 4.97546 5.14545 5.22261 5.36903 5.44677 5.54308 5.58156 5.70002 5.80073 5.92661 6.04536 6.17438 6.31372 6.44323 6.48554 6.60823 6.65295 7.27148 7.39488 7.67476 7.92181 8.02742 8.41110 9.52879 10.09351 10.45201 11.45224 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.038757 B = 0.001752 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.268757 B =15981.357902 C =16535.337055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.159 3.841 4 C -0.216 4.216 5 C 0.122 3.878 6 N -0.339 5.339 7 C 0.281 3.719 8 C -0.146 4.146 9 N -0.499 5.499 10 C 0.120 3.880 11 C -0.154 4.154 12 C 0.598 3.402 13 O -0.563 6.563 14 N -0.709 5.709 15 C 0.094 3.906 16 C 0.089 3.911 17 H 0.106 0.894 18 O -0.551 6.551 19 C 0.127 3.873 20 N -0.725 5.725 21 C -0.245 4.245 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.929 5.929 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.162 0.838 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.194 0.806 36 H 0.406 0.594 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.374 0.626 40 H 0.023 0.977 41 H 0.028 0.972 42 H 0.389 0.611 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.982 -28.134 -2.416 32.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.106 3.894 4 C -0.237 4.237 5 C -0.004 4.004 6 N -0.011 5.011 7 C 0.042 3.958 8 C -0.168 4.168 9 N -0.219 5.219 10 C -0.040 4.040 11 C -0.266 4.266 12 C 0.387 3.613 13 O -0.444 6.444 14 N -0.360 5.360 15 C -0.030 4.030 16 C 0.029 3.971 17 H 0.123 0.877 18 O -0.356 6.356 19 C -0.002 4.002 20 N -0.370 5.370 21 C -0.376 4.376 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 H 0.125 0.875 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.179 0.821 33 H 0.200 0.800 34 H 0.181 0.819 35 H 0.211 0.789 36 H 0.242 0.758 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.221 0.779 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.224 0.776 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.695 -28.625 -2.028 33.199 hybrid contribution -0.746 1.747 -0.177 1.908 sum -17.440 -26.877 -2.205 32.116 Atomic orbital electron populations 1.23220 0.77332 1.04786 1.01879 1.86055 1.22121 1.25480 1.87849 1.18879 0.91580 0.84559 0.94360 1.21118 1.01782 0.90442 1.10360 1.21853 0.81568 1.00809 0.96158 1.42586 1.06008 1.08065 1.44461 1.20606 0.86874 0.86780 1.01547 1.19384 0.91323 0.94978 1.11093 1.70607 1.14001 1.13086 1.24191 1.23286 0.95627 0.90431 0.94607 1.19772 0.89860 0.88757 1.28184 1.15333 0.85659 0.83377 0.76907 1.90804 1.18254 1.83235 1.52093 1.45539 1.09556 1.06530 1.74419 1.22138 0.98423 0.79310 1.03156 1.22401 0.91249 0.95206 0.88287 0.87652 1.86583 1.44539 1.87917 1.16590 1.21186 0.91644 0.88664 0.98694 1.42221 1.02799 1.04790 1.87215 1.19218 0.92691 0.83927 1.41796 0.91223 1.24760 0.95245 0.98121 1.02661 1.69675 0.96678 1.34713 1.56626 0.86181 0.76877 0.85311 0.77743 1.21691 1.21717 1.20778 0.87545 0.92061 0.92072 0.82090 0.79976 0.81922 0.78891 0.75807 0.90778 0.90299 0.77866 0.95935 0.95381 0.77608 0.93458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.82 101.05 0.99 1.05 16 2 O -0.30 -1.96 10.49 -18.62 -0.20 -2.16 16 3 C 0.16 1.21 6.72 -38.72 -0.26 0.95 16 4 C -0.22 -1.41 8.98 -39.78 -0.36 -1.76 16 5 C 0.12 1.10 10.49 -16.84 -0.18 0.92 16 6 N -0.34 -3.87 2.97 -60.19 -0.18 -4.05 16 7 C 0.28 3.23 7.76 -155.99 -1.21 2.02 16 8 C -0.15 -1.35 10.09 -38.89 -0.39 -1.74 16 9 N -0.50 -6.19 11.25 -12.31 -0.14 -6.33 16 10 C 0.12 1.31 11.32 -17.24 -0.20 1.11 16 11 C -0.15 -1.84 6.83 -83.39 -0.57 -2.41 16 12 C 0.60 7.78 7.59 -14.96 -0.11 7.66 16 13 O -0.56 -8.70 15.35 5.10 0.08 -8.62 16 14 N -0.71 -8.13 5.48 -63.21 -0.35 -8.48 16 15 C 0.09 1.17 5.32 -4.05 -0.02 1.15 16 16 C 0.09 1.30 3.09 -26.73 -0.08 1.22 16 17 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 18 O -0.55 -8.45 13.03 -35.23 -0.46 -8.91 16 19 C 0.13 2.39 5.92 -4.04 -0.02 2.37 16 20 N -0.73 -18.09 5.49 -59.91 -0.33 -18.42 16 21 C -0.25 -6.84 9.99 -15.05 -0.15 -6.99 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 25 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.06 0.09 7.68 -51.93 -0.40 -0.30 16 31 H 0.06 0.09 7.68 -51.93 -0.40 -0.30 16 32 H 0.16 0.51 6.39 -52.49 -0.34 0.17 16 33 H 0.18 1.60 6.79 -52.48 -0.36 1.25 16 34 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.19 1.47 7.37 -52.49 -0.39 1.08 16 36 H 0.41 3.97 7.26 -40.82 -0.30 3.67 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.37 4.81 9.05 45.56 0.41 5.22 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.39 10.42 7.54 -40.82 -0.31 10.11 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -36.32 370.22 -7.52 -43.84 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -4.57 Total: 12.55 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -2.66 Total: 5.12 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: -0.27 Total: -64.73 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.58 Total: -19.68 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.32 -7.52 -43.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320248654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.339 kcal (2) G-P(sol) polarization free energy of solvation -36.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds