Wall clock time and date at job start Tue Mar 31 2020 17:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35639 * 117.00096 * 2 1 4 4 C 1.40759 * 120.33030 * 0.02562 * 3 2 1 5 5 C 1.35011 * 120.04148 * 179.97438 * 4 3 2 6 6 N 1.36031 * 120.86026 * 0.25275 * 5 4 3 7 7 C 1.36669 * 120.88778 * 359.48456 * 6 5 4 8 8 C 1.37980 * 120.32948 * 179.97438 * 3 2 1 9 9 N 1.33329 * 108.60925 * 180.29041 * 7 6 5 10 10 C 1.32330 * 109.85082 * 359.56924 * 9 7 6 11 11 C 1.38501 * 108.25879 * 0.57781 * 10 9 7 12 12 C 1.41657 * 126.78719 * 179.53565 * 11 10 9 13 13 O 1.21800 * 119.99746 * 174.91976 * 12 11 10 14 14 N 1.34770 * 120.00127 * 354.93075 * 12 11 10 15 15 C 1.46497 * 119.99902 * 185.04755 * 14 12 11 16 16 C 1.52997 * 109.47120 * 179.97438 * 15 14 12 17 17 H 1.09003 * 109.47574 * 305.00362 * 16 15 14 18 18 O 1.42906 * 109.47246 * 65.00038 * 16 15 14 19 19 C 1.53004 * 109.47351 * 184.99953 * 16 15 14 20 20 N 1.46495 * 109.47193 * 180.02562 * 19 16 15 21 21 C 1.36941 * 119.99883 * 179.97438 * 20 19 16 22 22 H 1.08000 * 120.00056 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99766 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00179 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99753 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46920 * 90.00256 * 25 23 21 27 27 H 1.48495 * 109.47221 * 210.00633 * 25 23 21 28 28 H 1.48498 * 109.47261 * 330.00671 * 25 23 21 29 29 H 1.08993 * 109.47248 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47158 * 300.00110 * 1 2 3 31 31 H 1.09001 * 109.47300 * 59.99563 * 1 2 3 32 32 H 1.07994 * 119.98384 * 359.95928 * 4 3 2 33 33 H 1.08003 * 119.57257 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.39278 * 359.97438 * 8 3 2 35 35 H 1.08000 * 125.86675 * 180.10096 * 10 9 7 36 36 H 0.97002 * 119.99842 * 5.04197 * 14 12 11 37 37 H 1.08993 * 109.47226 * 299.99702 * 15 14 12 38 38 H 1.09003 * 109.47040 * 59.99720 * 15 14 12 39 39 H 0.96705 * 113.99463 * 60.00006 * 18 16 15 40 40 H 1.08997 * 109.47050 * 300.00239 * 19 16 15 41 41 H 1.09005 * 109.47096 * 60.00160 * 19 16 15 42 42 H 0.97000 * 120.00286 * 0.02562 * 20 19 16 43 43 H 0.96992 * 119.99931 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2085 0.0000 4 6 1.2850 2.3935 0.0005 5 6 1.9041 3.5933 0.0011 6 7 3.2617 3.6780 -0.0041 7 6 4.0350 2.5512 0.0006 8 6 3.4223 1.2887 0.0005 9 7 5.3176 2.9153 0.0003 10 6 5.4100 4.2353 -0.0138 11 6 4.1282 4.7601 -0.0099 12 6 3.7729 6.1313 -0.0120 13 8 2.6027 6.4571 -0.1015 14 7 4.7297 7.0755 0.0846 15 6 4.3566 8.4880 0.1938 16 6 5.6214 9.3436 0.2898 17 1 6.2365 8.9913 1.1178 18 8 6.3598 9.2408 -0.9294 19 6 5.2323 10.8039 0.5288 20 7 6.4433 11.6232 0.6201 21 6 6.3428 12.9723 0.8326 22 1 5.3708 13.4322 0.9333 23 6 7.4903 13.7486 0.9197 24 7 8.6749 13.1881 0.7975 25 14 7.3532 15.5887 1.2102 26 1 7.3577 15.8610 2.6700 27 1 8.5051 16.2774 0.5747 28 1 6.0878 16.0906 0.6170 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 0.2063 2.3429 0.0003 33 1 1.3137 4.4977 0.0011 34 1 4.0219 0.3904 0.0014 35 1 6.3272 4.8055 -0.0189 36 1 5.6655 6.8198 0.0820 37 1 3.7848 8.7818 -0.6864 38 1 3.7499 8.6355 1.0872 39 1 5.8728 9.5379 -1.7103 40 1 4.6173 11.1562 -0.2993 41 1 4.6691 10.8824 1.4587 42 1 7.3163 11.2103 0.5293 43 1 9.4767 13.7305 0.8580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320248654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:13 Heat of formation + Delta-G solvation = -44.696190 kcal Electronic energy + Delta-G solvation = -27267.883629 eV Core-core repulsion = 23121.377290 eV Total energy + Delta-G solvation = -4146.506339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.02998 -40.92433 -40.41025 -38.87789 -37.60507 -36.05858 -35.33998 -34.27820 -33.18869 -31.70471 -31.23648 -29.83809 -28.13876 -26.94610 -25.27377 -24.74520 -23.90516 -23.15082 -22.73006 -21.61514 -19.67021 -19.14964 -19.08646 -18.17756 -17.65733 -17.57863 -17.53719 -17.08335 -16.59539 -16.45577 -16.32478 -15.94931 -15.63704 -15.48018 -15.35331 -15.12864 -14.85720 -14.50470 -14.33917 -14.15364 -13.83287 -13.54643 -13.25704 -13.12009 -12.94080 -12.74478 -12.72110 -12.40973 -12.15041 -11.95567 -11.78898 -11.62343 -11.15764 -11.10196 -10.97650 -10.87254 -10.23987 -10.10678 -8.99094 -8.80003 -7.93426 -5.22667 -0.49768 -0.30724 1.12153 1.17977 1.48752 1.50331 1.58766 1.97145 2.22604 2.25881 2.30017 2.57712 3.20359 3.32448 3.38031 3.41193 3.50333 3.61692 3.78813 3.84133 3.92142 4.06158 4.21409 4.24134 4.32217 4.41776 4.43210 4.48714 4.63942 4.70425 4.75832 4.80050 4.85169 4.95918 5.09570 5.21766 5.26857 5.34470 5.49804 5.74549 6.10981 6.27657 6.38248 6.56237 6.82380 7.07217 7.35114 8.11153 8.34016 9.29661 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.038757 B = 0.001752 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.268757 B =15981.357902 C =16535.337055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.314 6.314 3 C 0.174 3.826 4 C -0.193 4.193 5 C 0.101 3.899 6 N -0.347 5.347 7 C 0.271 3.729 8 C -0.166 4.166 9 N -0.530 5.530 10 C 0.127 3.873 11 C -0.181 4.181 12 C 0.601 3.399 13 O -0.592 6.592 14 N -0.701 5.701 15 C 0.108 3.892 16 C 0.107 3.893 17 H 0.104 0.896 18 O -0.562 6.562 19 C 0.122 3.878 20 N -0.739 5.739 21 C -0.249 4.249 22 H 0.077 0.923 23 C -0.075 4.075 24 N -0.967 5.967 25 Si 0.974 3.026 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.269 1.269 29 H 0.124 0.876 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.200 0.800 33 H 0.183 0.817 34 H 0.170 0.830 35 H 0.219 0.781 36 H 0.415 0.585 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.385 0.615 40 H 0.031 0.969 41 H 0.035 0.965 42 H 0.377 0.623 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.147 -29.172 -2.451 34.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.225 6.225 3 C 0.121 3.879 4 C -0.214 4.214 5 C -0.025 4.025 6 N -0.018 5.018 7 C 0.033 3.967 8 C -0.188 4.188 9 N -0.250 5.250 10 C -0.034 4.034 11 C -0.293 4.293 12 C 0.392 3.608 13 O -0.476 6.476 14 N -0.352 5.352 15 C -0.017 4.017 16 C 0.047 3.953 17 H 0.122 0.878 18 O -0.369 6.369 19 C -0.006 4.006 20 N -0.382 5.382 21 C -0.381 4.381 22 H 0.095 0.905 23 C -0.267 4.267 24 N -0.617 5.617 25 Si 0.803 3.197 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.194 1.194 29 H 0.142 0.858 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.217 0.783 33 H 0.200 0.800 34 H 0.187 0.813 35 H 0.235 0.765 36 H 0.252 0.748 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.234 0.766 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.210 0.790 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.916 -29.689 -2.070 35.264 hybrid contribution -0.262 1.854 -0.182 1.881 sum -19.178 -27.835 -2.252 33.877 Atomic orbital electron populations 1.23606 0.75015 1.06598 1.03277 1.86072 1.24478 1.24741 1.87179 1.18951 0.91216 0.85443 0.92336 1.21513 1.03461 0.88959 1.07436 1.22123 0.80903 1.01874 0.97564 1.42701 1.06768 1.07768 1.44606 1.20924 0.86928 0.87499 1.01385 1.19566 0.92440 0.94466 1.12318 1.70593 1.14848 1.13804 1.25769 1.23720 0.96247 0.90198 0.93235 1.19708 0.90543 0.88529 1.30472 1.15416 0.85262 0.83841 0.76324 1.90776 1.19361 1.83678 1.53805 1.45385 1.09923 1.05878 1.74025 1.21881 0.96957 0.79487 1.03349 1.22115 0.91988 0.92974 0.88190 0.87844 1.86565 1.45298 1.87887 1.17151 1.21400 0.89645 0.90450 0.99059 1.42401 1.04115 1.04538 1.87192 1.19655 0.92887 0.85451 1.40090 0.90546 1.25583 0.95053 1.02505 1.03577 1.69832 0.97206 1.36075 1.58617 0.85136 0.76954 0.80144 0.77476 1.21410 1.22255 1.19409 0.85766 0.90618 0.90629 0.78323 0.80031 0.81285 0.76495 0.74756 0.90562 0.90186 0.76617 0.95101 0.94760 0.79037 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.82 113.37 1.11 1.13 16 2 O -0.31 -3.28 10.49 -89.53 -0.94 -4.22 16 3 C 0.17 2.32 6.72 22.83 0.15 2.48 16 4 C -0.19 -2.07 8.98 22.14 0.20 -1.88 16 5 C 0.10 1.73 10.49 83.30 0.87 2.60 16 6 N -0.35 -7.86 2.97 -344.34 -1.02 -8.88 16 7 C 0.27 6.24 7.76 133.86 1.04 7.27 16 8 C -0.17 -2.97 10.09 22.72 0.23 -2.74 16 9 N -0.53 -13.26 11.25 -192.85 -2.17 -15.43 16 10 C 0.13 2.74 11.32 84.68 0.96 3.70 16 11 C -0.18 -4.35 6.83 38.98 0.27 -4.08 16 12 C 0.60 15.47 7.59 85.09 0.65 16.12 16 13 O -0.59 -18.22 15.35 -4.67 -0.07 -18.29 16 14 N -0.70 -15.52 5.48 -472.08 -2.59 -18.11 16 15 C 0.11 2.57 5.32 86.38 0.46 3.03 16 16 C 0.11 3.05 3.09 30.59 0.09 3.15 16 17 H 0.10 3.02 8.14 -2.39 -0.02 3.00 16 18 O -0.56 -16.75 13.03 -148.98 -1.94 -18.69 16 19 C 0.12 4.48 5.92 86.38 0.51 5.00 16 20 N -0.74 -36.80 5.49 -343.44 -1.89 -38.69 16 21 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 23 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 24 N -0.97 -59.42 13.06 21.65 0.28 -59.14 16 25 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 29 H 0.12 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.08 -0.05 7.68 -2.39 -0.02 -0.07 16 31 H 0.08 -0.05 7.68 -2.39 -0.02 -0.07 16 32 H 0.20 0.48 6.39 -2.91 -0.02 0.46 16 33 H 0.18 3.10 6.79 -2.91 -0.02 3.08 16 34 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.22 3.17 7.37 -2.91 -0.02 3.15 16 36 H 0.42 7.72 7.26 -92.71 -0.67 7.04 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.38 9.50 9.05 -74.05 -0.67 8.83 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.38 20.39 7.54 -92.71 -0.70 19.69 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -78.56 370.22 -1.41 -79.96 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.95 Total: 34.46 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 7.85 Total: 18.98 kcal Atomic # 7 Polarization: -132.87 SS G_CDS: -7.38 Total: -140.25 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -2.95 Total: -41.19 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -78.56 -1.41 -79.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320248654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.268 kcal (2) G-P(sol) polarization free energy of solvation -78.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds