Wall clock time and date at job start Tue Mar 31 2020 17:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00069 * 2 1 4 4 C 1.53005 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47167 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.46992 * 174.98341 * 5 4 3 7 7 C 1.34772 * 120.00066 * 276.07839 * 6 5 4 8 8 O 1.21585 * 119.99959 * 354.83637 * 7 6 5 9 9 N 1.34773 * 120.00058 * 174.83300 * 7 6 5 10 10 C 1.46500 * 120.00198 * 185.10298 * 9 7 6 11 11 C 1.50699 * 109.47297 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00308 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99891 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00064 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99947 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47071 * 59.99803 * 15 13 11 17 17 H 1.48494 * 109.47208 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47049 * 299.99952 * 15 13 11 19 19 C 1.46504 * 119.99766 * 96.07908 * 6 5 4 20 20 H 1.09005 * 110.00918 * 184.01280 * 19 6 5 21 21 C 1.53875 * 110.02798 * 62.63795 * 19 6 5 22 22 C 1.54194 * 108.69190 * 193.57041 * 21 19 6 23 23 S 1.82922 * 105.10675 * 27.83590 * 22 21 19 24 24 O 1.42101 * 109.35234 * 244.51712 * 23 22 21 25 25 O 1.42099 * 109.35318 * 111.31390 * 23 22 21 26 26 C 1.55044 * 110.03016 * 305.39767 * 19 6 5 27 27 H 1.09006 * 109.47062 * 60.00130 * 1 2 3 28 28 H 1.09003 * 109.47494 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47031 * 300.00268 * 1 2 3 30 30 H 1.08993 * 109.47313 * 59.99524 * 3 2 1 31 31 H 1.09003 * 109.47144 * 299.99566 * 3 2 1 32 32 H 1.08997 * 109.46753 * 59.99780 * 4 3 2 33 33 H 1.09003 * 109.46735 * 299.99793 * 4 3 2 34 34 H 1.08998 * 109.46811 * 294.98542 * 5 4 3 35 35 H 1.08999 * 109.47051 * 54.98165 * 5 4 3 36 36 H 0.97005 * 120.00172 * 5.10346 * 9 7 6 37 37 H 1.08996 * 109.46840 * 300.00097 * 10 9 7 38 38 H 1.09003 * 109.47028 * 59.99982 * 10 9 7 39 39 H 0.97004 * 119.99953 * 179.97438 * 14 13 11 40 40 H 1.09003 * 109.64782 * 313.37878 * 21 19 6 41 41 H 1.09004 * 109.64528 * 73.67124 * 21 19 6 42 42 H 1.08993 * 110.27453 * 268.94146 * 22 21 19 43 43 H 1.09000 * 110.42525 * 146.80766 * 22 21 19 44 44 H 1.09006 * 110.78935 * 279.99656 * 26 19 6 45 45 H 1.08997 * 110.79047 * 43.45211 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6134 2.4686 0.1202 7 6 6.1808 2.3338 1.3352 8 8 5.4952 2.4005 2.3371 9 7 7.5082 2.1248 1.4396 10 6 8.1081 1.8669 2.7510 11 6 9.5938 1.6692 2.5936 12 1 10.0459 1.7291 1.6146 13 6 10.3758 1.4106 3.6993 14 7 9.8253 1.3371 4.8914 15 14 12.2173 1.1648 3.5042 16 1 12.8204 2.3878 2.9162 17 1 12.8254 0.9035 4.8334 18 1 12.4700 0.0082 2.6076 19 6 6.4523 2.5016 -1.0805 20 1 7.4953 2.3339 -0.8115 21 6 6.3029 3.8585 -1.7907 22 6 6.9107 3.7464 -3.2033 23 16 6.7344 1.9838 -3.6597 24 8 8.0235 1.4028 -3.8008 25 8 5.7821 1.8616 -4.7072 26 6 5.9826 1.4193 -2.0864 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8567 0.6438 -0.8908 33 1 3.8574 0.6435 0.8892 34 1 3.9087 3.0913 -0.9311 35 1 3.7672 3.1535 0.8421 36 1 8.0663 2.1452 0.6465 37 1 7.9227 2.7161 3.4087 38 1 7.6655 0.9693 3.1829 39 1 10.3754 1.1548 5.6693 40 1 5.2470 4.1183 -1.8661 41 1 6.8281 4.6280 -1.2249 42 1 7.9631 4.0293 -3.1852 43 1 6.3623 4.3756 -3.9044 44 1 6.3648 0.4379 -1.8052 45 1 4.8952 1.4055 -2.1601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320917010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:52 Heat of formation + Delta-G solvation = -136.200983 kcal Electronic energy + Delta-G solvation = -27810.475131 eV Core-core repulsion = 23763.152047 eV Total energy + Delta-G solvation = -4047.323084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.18916 -38.08216 -37.32499 -37.18768 -36.24717 -34.77707 -33.87925 -32.60212 -31.66203 -29.83633 -27.77902 -26.81660 -25.43665 -24.86348 -22.65455 -22.02510 -21.52741 -19.30771 -19.10204 -18.72048 -17.14975 -16.75210 -16.40628 -16.22581 -16.09198 -15.89830 -15.62547 -15.24186 -15.00253 -14.64003 -14.57053 -14.32243 -14.12063 -13.76319 -13.21899 -13.05624 -12.78578 -12.63399 -12.40988 -12.27962 -12.26180 -12.14655 -11.98311 -11.95325 -11.77996 -11.39959 -11.20583 -11.09035 -10.98692 -10.88797 -10.85683 -10.61779 -10.31235 -9.83128 -9.51555 -9.41618 -8.80655 -8.67858 -7.87204 -6.17947 -4.25142 -0.26804 2.19201 2.82566 3.25431 3.27583 3.30581 3.32163 3.56231 3.67482 3.74957 4.06228 4.16464 4.28504 4.32984 4.38111 4.46750 4.70039 4.80425 4.93529 5.07489 5.09028 5.14564 5.17934 5.18633 5.19503 5.22840 5.35249 5.37451 5.46167 5.53687 5.55517 5.64606 5.99531 6.16265 6.54136 6.91524 7.00105 7.38686 7.44617 7.51131 7.74780 7.96634 8.65733 8.80266 9.17291 9.42256 10.92056 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.008463 B = 0.003939 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.550309 B = 7107.013242 C = 9612.649873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.064 3.936 4 C -0.142 4.142 5 C 0.135 3.865 6 N -0.621 5.621 7 C 0.697 3.303 8 O -0.586 6.586 9 N -0.728 5.728 10 C 0.266 3.734 11 C -0.545 4.545 12 H 0.062 0.938 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.903 3.097 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.146 3.854 20 H 0.114 0.886 21 C -0.129 4.129 22 C -0.590 4.590 23 S 2.390 3.610 24 O -0.930 6.930 25 O -0.938 6.938 26 C -0.610 4.610 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.385 0.615 37 H 0.027 0.973 38 H 0.025 0.975 39 H 0.267 0.733 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.148 0.852 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.399 4.647 -16.848 22.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.013 4.013 4 C -0.181 4.181 5 C 0.011 3.989 6 N -0.359 5.359 7 C 0.398 3.602 8 O -0.463 6.463 9 N -0.383 5.383 10 C 0.145 3.855 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.730 3.270 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.200 1.200 19 C 0.038 3.962 20 H 0.131 0.869 21 C -0.168 4.168 22 C -0.720 4.720 23 S 2.572 3.428 24 O -0.927 6.927 25 O -0.935 6.935 26 C -0.740 4.740 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.220 0.780 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.120 0.880 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.166 0.834 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.471 3.984 -16.650 21.785 hybrid contribution 0.837 0.463 0.295 1.001 sum -12.634 4.447 -16.355 21.140 Atomic orbital electron populations 1.22731 0.81165 1.02694 0.99880 1.87896 1.19582 1.28109 1.95404 1.22453 0.93943 0.84707 1.00188 1.22080 0.92909 0.98730 1.04399 1.21078 0.79028 0.96096 1.02672 1.47010 1.05819 1.79143 1.03883 1.16070 0.83277 0.78362 0.82452 1.90897 1.62534 1.58416 1.34493 1.45981 1.04880 1.74231 1.13161 1.19023 0.91961 0.96846 0.77647 1.21169 0.91758 1.51241 0.94167 0.91966 1.24927 0.99249 0.94774 0.94909 1.69962 1.36221 1.47472 0.98529 0.86480 0.84226 0.78823 0.77425 1.20054 1.21079 1.19976 1.21618 0.97063 0.91320 0.86188 0.86861 1.22346 1.03435 0.98861 0.92203 1.30473 1.11240 1.24252 1.06025 1.09025 0.76161 0.79694 0.77892 1.93660 1.38411 1.75017 1.85593 1.93618 1.62743 1.85406 1.51758 1.31255 1.14020 1.09503 1.19223 0.94199 0.89723 0.94039 0.92896 0.93391 0.90861 0.89892 0.90598 0.89398 0.78018 0.95525 0.95684 0.92362 0.89106 0.88014 0.84033 0.84138 0.83413 0.83606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.69 10.70 -35.23 -0.38 -5.07 16 3 C 0.06 0.66 5.94 37.16 0.22 0.88 16 4 C -0.14 -1.65 5.61 -26.73 -0.15 -1.80 16 5 C 0.14 1.47 4.48 -4.04 -0.02 1.45 16 6 N -0.62 -8.15 2.44 -170.05 -0.42 -8.56 16 7 C 0.70 13.27 8.22 -86.93 -0.71 12.56 16 8 O -0.59 -13.60 16.00 5.29 0.08 -13.52 16 9 N -0.73 -14.73 5.45 -66.42 -0.36 -15.09 16 10 C 0.27 6.88 5.43 -5.19 -0.03 6.86 16 11 C -0.54 -14.48 9.28 -34.44 -0.32 -14.80 16 12 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 14 N -0.88 -25.72 13.29 55.43 0.74 -24.98 16 15 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.15 1.42 2.95 -66.39 -0.20 1.22 16 20 H 0.11 1.14 5.50 -51.93 -0.29 0.85 16 21 C -0.13 -0.88 5.90 -25.65 -0.15 -1.03 16 22 C -0.59 -3.28 7.26 37.78 0.27 -3.01 16 23 S 2.39 20.08 6.11 -107.50 -0.66 19.42 16 24 O -0.93 -11.54 18.15 -57.71 -1.05 -12.59 16 25 O -0.94 -10.69 18.15 -57.71 -1.05 -11.73 16 26 C -0.61 -4.98 6.24 38.24 0.24 -4.74 16 27 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.77 5.95 -51.93 -0.31 0.46 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.08 0.54 6.41 -51.93 -0.33 0.20 16 35 H 0.09 1.08 7.54 -51.93 -0.39 0.69 16 36 H 0.38 6.60 5.72 -40.82 -0.23 6.36 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.09 0.48 6.53 -51.93 -0.34 0.14 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.14 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.14 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.15 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.15 1.01 5.45 -51.93 -0.28 0.72 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -38.29 375.63 -9.05 -47.35 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.78 Total: 2.82 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 0.17 Total: 0.66 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.04 Total: -48.64 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -2.39 Total: -42.90 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 20.08 SS G_CDS: -0.66 Total: 19.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -38.29 -9.05 -47.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320917010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.851 kcal (2) G-P(sol) polarization free energy of solvation -38.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds