Wall clock time and date at job start Tue Mar 31 2020 17:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00069 * 2 1 4 4 C 1.53005 * 109.47127 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47167 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.46992 * 174.98341 * 5 4 3 7 7 C 1.34772 * 120.00066 * 276.07839 * 6 5 4 8 8 O 1.21585 * 119.99959 * 354.83637 * 7 6 5 9 9 N 1.34773 * 120.00058 * 174.83300 * 7 6 5 10 10 C 1.46500 * 120.00198 * 185.10298 * 9 7 6 11 11 C 1.50699 * 109.47297 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00308 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99891 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00064 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99947 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47071 * 59.99803 * 15 13 11 17 17 H 1.48494 * 109.47208 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.47049 * 299.99952 * 15 13 11 19 19 C 1.46504 * 119.99766 * 96.07908 * 6 5 4 20 20 H 1.09005 * 110.00918 * 184.01280 * 19 6 5 21 21 C 1.53875 * 110.02798 * 62.63795 * 19 6 5 22 22 C 1.54194 * 108.69190 * 193.57041 * 21 19 6 23 23 S 1.82922 * 105.10675 * 27.83590 * 22 21 19 24 24 O 1.42101 * 109.35234 * 244.51712 * 23 22 21 25 25 O 1.42099 * 109.35318 * 111.31390 * 23 22 21 26 26 C 1.55044 * 110.03016 * 305.39767 * 19 6 5 27 27 H 1.09006 * 109.47062 * 60.00130 * 1 2 3 28 28 H 1.09003 * 109.47494 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47031 * 300.00268 * 1 2 3 30 30 H 1.08993 * 109.47313 * 59.99524 * 3 2 1 31 31 H 1.09003 * 109.47144 * 299.99566 * 3 2 1 32 32 H 1.08997 * 109.46753 * 59.99780 * 4 3 2 33 33 H 1.09003 * 109.46735 * 299.99793 * 4 3 2 34 34 H 1.08998 * 109.46811 * 294.98542 * 5 4 3 35 35 H 1.08999 * 109.47051 * 54.98165 * 5 4 3 36 36 H 0.97005 * 120.00172 * 5.10346 * 9 7 6 37 37 H 1.08996 * 109.46840 * 300.00097 * 10 9 7 38 38 H 1.09003 * 109.47028 * 59.99982 * 10 9 7 39 39 H 0.97004 * 119.99953 * 179.97438 * 14 13 11 40 40 H 1.09003 * 109.64782 * 313.37878 * 21 19 6 41 41 H 1.09004 * 109.64528 * 73.67124 * 21 19 6 42 42 H 1.08993 * 110.27453 * 268.94146 * 22 21 19 43 43 H 1.09000 * 110.42525 * 146.80766 * 22 21 19 44 44 H 1.09006 * 110.78935 * 279.99656 * 26 19 6 45 45 H 1.08997 * 110.79047 * 43.45211 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6134 2.4686 0.1202 7 6 6.1808 2.3338 1.3352 8 8 5.4952 2.4005 2.3371 9 7 7.5082 2.1248 1.4396 10 6 8.1081 1.8669 2.7510 11 6 9.5938 1.6692 2.5936 12 1 10.0459 1.7291 1.6146 13 6 10.3758 1.4106 3.6993 14 7 9.8253 1.3371 4.8914 15 14 12.2173 1.1648 3.5042 16 1 12.8204 2.3878 2.9162 17 1 12.8254 0.9035 4.8334 18 1 12.4700 0.0082 2.6076 19 6 6.4523 2.5016 -1.0805 20 1 7.4953 2.3339 -0.8115 21 6 6.3029 3.8585 -1.7907 22 6 6.9107 3.7464 -3.2033 23 16 6.7344 1.9838 -3.6597 24 8 8.0235 1.4028 -3.8008 25 8 5.7821 1.8616 -4.7072 26 6 5.9826 1.4193 -2.0864 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8567 0.6438 -0.8908 33 1 3.8574 0.6435 0.8892 34 1 3.9087 3.0913 -0.9311 35 1 3.7672 3.1535 0.8421 36 1 8.0663 2.1452 0.6465 37 1 7.9227 2.7161 3.4087 38 1 7.6655 0.9693 3.1829 39 1 10.3754 1.1548 5.6693 40 1 5.2470 4.1183 -1.8661 41 1 6.8281 4.6280 -1.2249 42 1 7.9631 4.0293 -3.1852 43 1 6.3623 4.3756 -3.9044 44 1 6.3648 0.4379 -1.8052 45 1 4.8952 1.4055 -2.1601 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320917010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:51 Heat of formation + Delta-G solvation = -167.812962 kcal Electronic energy + Delta-G solvation = -27811.845929 eV Core-core repulsion = 23763.152047 eV Total energy + Delta-G solvation = -4048.693882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48283 -38.96615 -38.34153 -38.07082 -37.04920 -36.34824 -35.06479 -34.41404 -32.81299 -30.54646 -29.39989 -27.87476 -26.17725 -25.91657 -24.38028 -22.87363 -22.67817 -20.67727 -20.03975 -19.70364 -18.24789 -17.98547 -17.42533 -17.13059 -17.05941 -16.96806 -16.69608 -16.51771 -16.31093 -15.86813 -15.42024 -15.31861 -15.03692 -14.88253 -14.63514 -14.28923 -14.03038 -13.62767 -13.41241 -13.28638 -13.22588 -13.08058 -13.03179 -12.90145 -12.88733 -12.68603 -12.65996 -12.24770 -12.13002 -11.98093 -11.84128 -11.67292 -11.48578 -11.36212 -11.08431 -10.78755 -10.60284 -10.10842 -9.51623 -8.27771 -6.44067 -0.93302 1.42847 1.47112 1.48077 1.56175 1.75462 2.14116 2.38409 2.64130 2.84264 3.01483 3.07354 3.09665 3.35584 3.54813 3.71907 3.82117 3.92527 4.00471 4.15480 4.30001 4.35226 4.42080 4.50294 4.53217 4.55656 4.65884 4.68277 4.85365 4.86741 4.90859 5.00858 5.08069 5.13255 5.21788 5.28102 5.46641 5.54209 5.66073 5.84584 6.02851 6.25753 6.67161 7.12964 7.26175 7.65695 8.84091 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.008463 B = 0.003939 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.550309 B = 7107.013242 C = 9612.649873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.064 3.936 4 C -0.139 4.139 5 C 0.130 3.870 6 N -0.606 5.606 7 C 0.695 3.305 8 O -0.635 6.635 9 N -0.726 5.726 10 C 0.286 3.714 11 C -0.556 4.556 12 H 0.083 0.917 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.981 3.019 16 H -0.260 1.260 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.131 3.869 20 H 0.106 0.894 21 C -0.126 4.126 22 C -0.560 4.560 23 S 2.403 3.597 24 O -0.976 6.976 25 O -0.968 6.968 26 C -0.608 4.608 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.034 0.966 34 H 0.130 0.870 35 H 0.072 0.928 36 H 0.401 0.599 37 H -0.011 1.011 38 H -0.017 1.017 39 H 0.269 0.731 40 H 0.117 0.883 41 H 0.107 0.893 42 H 0.157 0.843 43 H 0.173 0.827 44 H 0.143 0.857 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 6.262 -19.881 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.343 6.343 3 C -0.013 4.013 4 C -0.178 4.178 5 C 0.008 3.992 6 N -0.342 5.342 7 C 0.396 3.604 8 O -0.517 6.517 9 N -0.382 5.382 10 C 0.163 3.837 11 C -0.594 4.594 12 H 0.101 0.899 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.804 3.196 16 H -0.185 1.185 17 H -0.211 1.211 18 H -0.189 1.189 19 C 0.025 3.975 20 H 0.124 0.876 21 C -0.166 4.166 22 C -0.693 4.693 23 S 2.589 3.411 24 O -0.973 6.973 25 O -0.965 6.965 26 C -0.737 4.737 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.053 0.947 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.240 0.760 37 H 0.007 0.993 38 H 0.001 0.999 39 H 0.077 0.923 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.175 0.825 43 H 0.191 0.809 44 H 0.161 0.839 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -13.380 5.578 -19.794 24.535 hybrid contribution 0.677 -0.019 1.228 1.402 sum -12.703 5.559 -18.566 23.173 Atomic orbital electron populations 1.22920 0.79416 1.03672 1.01020 1.87847 1.21637 1.29178 1.95659 1.22499 0.92626 0.84496 1.01640 1.22026 0.94444 0.98679 1.02603 1.21370 0.77166 0.95967 1.04741 1.46884 1.07093 1.77326 1.02864 1.16234 0.82499 0.77822 0.83807 1.90858 1.63415 1.60327 1.37077 1.45558 1.05899 1.74913 1.11803 1.18396 0.92390 0.93368 0.79562 1.21563 0.91870 1.50782 0.95194 0.89912 1.26006 1.04790 0.94124 0.94376 1.70127 1.38384 1.48636 0.99623 0.85262 0.77423 0.79433 0.77450 1.18468 1.21125 1.18884 1.21963 0.96164 0.94141 0.85263 0.87575 1.22368 1.05462 0.96449 0.92288 1.30316 1.12900 1.20546 1.05543 1.08484 0.74535 0.80943 0.77122 1.93601 1.40311 1.77153 1.86231 1.93578 1.63244 1.86561 1.53101 1.31228 1.15140 1.08908 1.18474 0.92237 0.88985 0.93649 0.93326 0.89911 0.89634 0.94677 0.85185 0.90954 0.76048 0.99325 0.99863 0.92260 0.86501 0.87488 0.82475 0.80946 0.83911 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.86 10.70 -148.98 -1.59 -11.46 16 3 C 0.06 1.23 5.94 71.98 0.43 1.65 16 4 C -0.14 -3.14 5.61 30.60 0.17 -2.97 16 5 C 0.13 2.61 4.48 86.38 0.39 2.99 16 6 N -0.61 -15.34 2.44 -810.17 -1.98 -17.32 16 7 C 0.70 27.33 8.22 179.06 1.47 28.80 16 8 O -0.64 -31.28 16.00 -3.98 -0.06 -31.34 16 9 N -0.73 -30.30 5.45 -482.31 -2.63 -32.93 16 10 C 0.29 15.62 5.43 85.63 0.47 16.09 16 11 C -0.56 -30.02 9.28 25.60 0.24 -29.78 16 12 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 13 C 0.01 0.38 5.46 84.66 0.46 0.85 16 14 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 15 Si 0.98 42.19 29.54 68.60 2.03 44.22 16 16 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 17 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 19 C 0.13 2.26 2.95 45.99 0.14 2.39 16 20 H 0.11 1.98 5.50 -2.38 -0.01 1.96 16 21 C -0.13 -1.17 5.90 31.29 0.18 -0.98 16 22 C -0.56 -3.63 7.26 72.39 0.53 -3.10 16 23 S 2.40 34.80 6.11 -56.49 -0.34 34.45 16 24 O -0.98 -23.22 18.15 -127.49 -2.31 -25.53 16 25 O -0.97 -19.80 18.15 -127.49 -2.31 -22.11 16 26 C -0.61 -8.67 6.24 72.68 0.45 -8.21 16 27 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.68 5.95 -2.39 -0.01 1.66 16 33 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 34 H 0.13 1.22 6.41 -2.39 -0.02 1.21 16 35 H 0.07 1.74 7.54 -2.39 -0.02 1.72 16 36 H 0.40 13.78 5.72 -92.70 -0.53 13.25 16 37 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 39 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 40 H 0.12 0.53 6.53 -2.39 -0.02 0.52 16 41 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 42 H 0.16 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.17 0.23 8.14 -2.39 -0.02 0.21 16 44 H 0.14 2.22 8.14 -2.38 -0.02 2.20 16 45 H 0.16 1.74 5.45 -2.39 -0.01 1.73 16 Total: -1.00 -89.13 375.63 -2.28 -91.41 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.48 Total: 16.80 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 6.17 Total: 9.37 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -4.32 Total: -105.81 kcal Atomic # 8 Polarization: -84.16 SS G_CDS: -6.28 Total: -90.44 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 34.80 SS G_CDS: -0.34 Total: 34.45 kcal Total: -89.13 -2.28 -91.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320917010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.401 kcal (2) G-P(sol) polarization free energy of solvation -89.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds