Wall clock time and date at job start Tue Mar 31 2020 17:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00362 * 2 1 4 4 C 1.53000 * 109.47422 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46995 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.46711 * 180.02562 * 5 4 3 7 7 C 1.34776 * 120.00315 * 90.00099 * 6 5 4 8 8 O 1.21588 * 120.00160 * 174.48982 * 7 6 5 9 9 N 1.34780 * 119.99843 * 354.48603 * 7 6 5 10 10 C 1.46504 * 119.99676 * 184.98174 * 9 7 6 11 11 C 1.50701 * 109.46580 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00369 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99719 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99964 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00067 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47121 * 90.00303 * 15 13 11 17 17 H 1.48497 * 109.47291 * 210.00224 * 15 13 11 18 18 H 1.48497 * 109.47284 * 330.00158 * 15 13 11 19 19 C 1.46499 * 119.99746 * 269.99205 * 6 5 4 20 20 H 1.09005 * 110.01527 * 3.44120 * 19 6 5 21 21 C 1.53879 * 110.02357 * 124.81352 * 19 6 5 22 22 C 1.54175 * 108.70317 * 166.47227 * 21 19 6 23 23 S 1.82919 * 105.08360 * 332.09668 * 22 21 19 24 24 O 1.42095 * 109.35476 * 115.52262 * 23 22 21 25 25 O 1.42104 * 109.35105 * 248.58917 * 23 22 21 26 26 C 1.55049 * 110.03234 * 242.05814 * 19 6 5 27 27 H 1.09000 * 109.46983 * 300.00306 * 1 2 3 28 28 H 1.09000 * 109.47176 * 60.00158 * 1 2 3 29 29 H 1.08993 * 109.47696 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46689 * 299.99916 * 3 2 1 31 31 H 1.09002 * 109.47097 * 59.99195 * 3 2 1 32 32 H 1.09002 * 109.46826 * 300.00068 * 4 3 2 33 33 H 1.09001 * 109.46791 * 59.99321 * 4 3 2 34 34 H 1.08999 * 109.46928 * 299.99211 * 5 4 3 35 35 H 1.08998 * 109.47351 * 60.00051 * 5 4 3 36 36 H 0.97002 * 120.00001 * 4.98218 * 9 7 6 37 37 H 1.08990 * 109.47134 * 299.99938 * 10 9 7 38 38 H 1.08998 * 109.46667 * 60.00596 * 10 9 7 39 39 H 0.97003 * 119.99904 * 179.97438 * 14 13 11 40 40 H 1.08994 * 109.64847 * 286.32480 * 21 19 6 41 41 H 1.09004 * 109.64638 * 46.62582 * 21 19 6 42 42 H 1.09001 * 110.31466 * 90.99776 * 22 21 19 43 43 H 1.08997 * 110.31851 * 213.19008 * 22 21 19 44 44 H 1.08998 * 110.78452 * 316.54209 * 26 19 6 45 45 H 1.08994 * 110.78726 * 80.00609 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6182 2.4665 -0.0025 7 6 6.2891 2.4132 -1.1703 8 8 7.5049 2.4182 -1.1737 9 7 5.6121 2.3542 -2.3342 10 6 6.3377 2.1863 -3.5958 11 6 5.3561 2.1503 -4.7388 12 1 4.2978 2.2436 -4.5449 13 6 5.8093 1.9992 -6.0321 14 7 7.0982 1.8861 -6.2683 15 14 4.5928 1.9553 -7.4489 16 1 4.3691 3.3345 -7.9523 17 1 5.1371 1.1114 -8.5428 18 1 3.3049 1.3853 -6.9781 19 6 6.3495 2.4089 1.2656 20 1 5.6486 2.4031 2.1005 21 6 7.2309 1.1483 1.3088 22 6 8.2294 1.2830 2.4757 23 16 8.4792 3.0831 2.6832 24 8 7.9888 3.4831 3.9554 25 8 9.8040 3.4223 2.2968 26 6 7.3053 3.6241 1.3832 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8463 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 3.8575 0.6435 0.8891 33 1 3.8567 0.6437 -0.8908 34 1 3.8359 3.1229 -0.8913 35 1 3.8366 3.1235 0.8887 36 1 4.6445 2.4229 -2.3366 37 1 7.0255 3.0205 -3.7332 38 1 6.8995 1.2525 -3.5703 39 1 7.4170 1.7795 -7.1782 40 1 6.6055 0.2689 1.4613 41 1 7.7758 1.0498 0.3698 42 1 7.8097 0.8519 3.3846 43 1 9.1721 0.7963 2.2254 44 1 7.8253 3.7997 0.4416 45 1 6.7617 4.5147 1.6983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320917013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:55 Heat of formation + Delta-G solvation = -140.072098 kcal Electronic energy + Delta-G solvation = -27838.299791 eV Core-core repulsion = 23790.808843 eV Total energy + Delta-G solvation = -4047.490948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24468 -38.12513 -37.08726 -36.65802 -36.03350 -35.22250 -33.96037 -32.26592 -31.77197 -29.58815 -27.36854 -27.03492 -25.35232 -24.72868 -22.98585 -21.88478 -21.52269 -19.45012 -18.89989 -18.06813 -17.15085 -16.68424 -16.39333 -16.35412 -15.97829 -15.70297 -15.46638 -15.23624 -14.83693 -14.68408 -14.53235 -14.15756 -14.11331 -13.69338 -13.11585 -12.99886 -12.69949 -12.47982 -12.30701 -12.21399 -12.13748 -12.05833 -12.04274 -11.84312 -11.64400 -11.36324 -11.24105 -11.07504 -11.00393 -10.93030 -10.76223 -10.42143 -10.33175 -9.86847 -9.43156 -9.36106 -8.80535 -8.68108 -7.87212 -6.20129 -4.27084 -0.01505 2.40158 2.86682 3.21266 3.27942 3.29868 3.49838 3.54713 3.70937 3.93930 4.24004 4.34901 4.38878 4.56584 4.64002 4.72349 4.78307 4.81761 4.90992 5.03244 5.07172 5.13714 5.16395 5.17432 5.25830 5.27918 5.40066 5.46035 5.53085 5.62485 5.83176 5.88624 6.05402 6.09627 6.56963 6.90972 6.96404 7.38603 7.43089 7.49589 7.73142 7.94976 8.65060 8.78483 9.15553 9.40307 10.89933 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.008555 B = 0.003905 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3272.155352 B = 7167.940760 C = 9983.341353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.063 3.937 4 C -0.144 4.144 5 C 0.115 3.885 6 N -0.625 5.625 7 C 0.697 3.303 8 O -0.590 6.590 9 N -0.724 5.724 10 C 0.265 3.735 11 C -0.543 4.543 12 H 0.061 0.939 13 C 0.065 3.935 14 N -0.884 5.884 15 Si 0.903 3.097 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.273 1.273 19 C 0.178 3.822 20 H 0.106 0.894 21 C -0.139 4.139 22 C -0.584 4.584 23 S 2.390 3.610 24 O -0.946 6.946 25 O -0.936 6.936 26 C -0.605 4.605 27 H 0.039 0.961 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.387 0.613 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.266 0.734 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.162 0.838 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.741 -0.884 17.712 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.014 4.014 4 C -0.183 4.183 5 C -0.010 4.010 6 N -0.362 5.362 7 C 0.399 3.601 8 O -0.469 6.469 9 N -0.377 5.377 10 C 0.144 3.856 11 C -0.582 4.582 12 H 0.079 0.921 13 C -0.139 4.139 14 N -0.521 5.521 15 Si 0.730 3.270 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.070 3.930 20 H 0.124 0.876 21 C -0.178 4.178 22 C -0.714 4.714 23 S 2.573 3.427 24 O -0.943 6.943 25 O -0.933 6.933 26 C -0.736 4.736 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.221 0.779 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.134 0.866 42 H 0.151 0.849 43 H 0.158 0.842 44 H 0.180 0.820 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.981 -0.566 18.100 19.790 hybrid contribution -1.900 -0.256 -1.400 2.374 sum -9.882 -0.822 16.700 19.422 Atomic orbital electron populations 1.22734 0.81056 1.02745 0.99938 1.87894 1.19664 1.27981 1.95414 1.22451 0.93757 0.84848 1.00333 1.22051 0.93129 0.98409 1.04705 1.21411 0.79879 0.96091 1.03570 1.47005 1.05583 1.79460 1.04159 1.16088 0.85528 0.78257 0.80254 1.90810 1.11570 1.58521 1.85998 1.45936 1.10080 1.75390 1.06255 1.19028 0.92163 0.97377 0.76985 1.21181 0.93176 1.52588 0.91211 0.92066 1.24923 0.95387 0.94702 0.98848 1.69972 1.12876 1.48080 1.21188 0.86432 0.80889 0.78098 0.81581 1.20479 1.20981 1.19781 1.21311 0.93230 0.91145 0.87266 0.87591 1.22453 0.97372 0.98679 0.99336 1.30379 1.09176 1.24650 1.07209 1.08922 0.76987 0.79860 0.76892 1.93596 1.82008 1.80842 1.37851 1.93623 1.33941 1.81847 1.83843 1.31147 1.15187 1.06940 1.20309 0.94228 0.93910 0.89704 0.92824 0.93305 0.90679 0.89865 0.89933 0.90015 0.77892 0.95505 0.95642 0.92407 0.89138 0.86612 0.84854 0.84249 0.81971 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.39 10.70 -35.23 -0.38 -4.76 16 3 C 0.06 0.58 5.94 37.16 0.22 0.80 16 4 C -0.14 -1.44 5.91 -26.73 -0.16 -1.60 16 5 C 0.11 1.11 5.05 -4.04 -0.02 1.09 16 6 N -0.62 -8.01 2.48 -170.04 -0.42 -8.43 16 7 C 0.70 12.65 7.58 -86.91 -0.66 12.00 16 8 O -0.59 -12.58 12.49 5.29 0.07 -12.51 16 9 N -0.72 -14.24 5.41 -66.41 -0.36 -14.60 16 10 C 0.27 6.72 5.43 -5.19 -0.03 6.69 16 11 C -0.54 -14.21 9.28 -34.44 -0.32 -14.53 16 12 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 13 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 14 N -0.88 -25.46 13.29 55.43 0.74 -24.72 16 15 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 C 0.18 1.89 3.01 -66.39 -0.20 1.69 16 20 H 0.11 0.75 7.86 -51.93 -0.41 0.34 16 21 C -0.14 -1.51 5.72 -25.66 -0.15 -1.65 16 22 C -0.58 -5.11 7.26 37.77 0.27 -4.84 16 23 S 2.39 26.56 6.10 -107.50 -0.66 25.90 16 24 O -0.95 -12.34 18.14 -57.73 -1.05 -13.39 16 25 O -0.94 -14.46 18.15 -57.73 -1.05 -15.51 16 26 C -0.60 -6.75 6.65 38.24 0.25 -6.50 16 27 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.81 6.52 -51.93 -0.34 0.48 16 35 H 0.08 0.56 7.96 -51.93 -0.41 0.14 16 36 H 0.39 6.59 6.14 -40.82 -0.25 6.34 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.12 1.66 5.81 -51.93 -0.30 1.36 16 42 H 0.13 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.14 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.16 2.33 6.11 -51.93 -0.32 2.01 16 45 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -36.60 378.09 -9.26 -45.85 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.06 Total: 4.94 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 0.23 Total: -3.83 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.04 Total: -47.75 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -2.41 Total: -46.17 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 26.56 SS G_CDS: -0.66 Total: 25.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.60 -9.26 -45.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320917013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.219 kcal (2) G-P(sol) polarization free energy of solvation -36.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds