Wall clock time and date at job start Tue Mar 31 2020 17:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00362 * 2 1 4 4 C 1.53000 * 109.47422 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46995 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.46711 * 180.02562 * 5 4 3 7 7 C 1.34776 * 120.00315 * 90.00099 * 6 5 4 8 8 O 1.21588 * 120.00160 * 174.48982 * 7 6 5 9 9 N 1.34780 * 119.99843 * 354.48603 * 7 6 5 10 10 C 1.46504 * 119.99676 * 184.98174 * 9 7 6 11 11 C 1.50701 * 109.46580 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00369 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99719 * 179.97438 * 11 10 9 14 14 N 1.31521 * 119.99964 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00067 * 180.02562 * 13 11 10 16 16 H 1.48505 * 109.47121 * 90.00303 * 15 13 11 17 17 H 1.48497 * 109.47291 * 210.00224 * 15 13 11 18 18 H 1.48497 * 109.47284 * 330.00158 * 15 13 11 19 19 C 1.46499 * 119.99746 * 269.99205 * 6 5 4 20 20 H 1.09005 * 110.01527 * 3.44120 * 19 6 5 21 21 C 1.53879 * 110.02357 * 124.81352 * 19 6 5 22 22 C 1.54175 * 108.70317 * 166.47227 * 21 19 6 23 23 S 1.82919 * 105.08360 * 332.09668 * 22 21 19 24 24 O 1.42095 * 109.35476 * 115.52262 * 23 22 21 25 25 O 1.42104 * 109.35105 * 248.58917 * 23 22 21 26 26 C 1.55049 * 110.03234 * 242.05814 * 19 6 5 27 27 H 1.09000 * 109.46983 * 300.00306 * 1 2 3 28 28 H 1.09000 * 109.47176 * 60.00158 * 1 2 3 29 29 H 1.08993 * 109.47696 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46689 * 299.99916 * 3 2 1 31 31 H 1.09002 * 109.47097 * 59.99195 * 3 2 1 32 32 H 1.09002 * 109.46826 * 300.00068 * 4 3 2 33 33 H 1.09001 * 109.46791 * 59.99321 * 4 3 2 34 34 H 1.08999 * 109.46928 * 299.99211 * 5 4 3 35 35 H 1.08998 * 109.47351 * 60.00051 * 5 4 3 36 36 H 0.97002 * 120.00001 * 4.98218 * 9 7 6 37 37 H 1.08990 * 109.47134 * 299.99938 * 10 9 7 38 38 H 1.08998 * 109.46667 * 60.00596 * 10 9 7 39 39 H 0.97003 * 119.99904 * 179.97438 * 14 13 11 40 40 H 1.08994 * 109.64847 * 286.32480 * 21 19 6 41 41 H 1.09004 * 109.64638 * 46.62582 * 21 19 6 42 42 H 1.09001 * 110.31466 * 90.99776 * 22 21 19 43 43 H 1.08997 * 110.31851 * 213.19008 * 22 21 19 44 44 H 1.08998 * 110.78452 * 316.54209 * 26 19 6 45 45 H 1.08994 * 110.78726 * 80.00609 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6182 2.4665 -0.0025 7 6 6.2891 2.4132 -1.1703 8 8 7.5049 2.4182 -1.1737 9 7 5.6121 2.3542 -2.3342 10 6 6.3377 2.1863 -3.5958 11 6 5.3561 2.1503 -4.7388 12 1 4.2978 2.2436 -4.5449 13 6 5.8093 1.9992 -6.0321 14 7 7.0982 1.8861 -6.2683 15 14 4.5928 1.9553 -7.4489 16 1 4.3691 3.3345 -7.9523 17 1 5.1371 1.1114 -8.5428 18 1 3.3049 1.3853 -6.9781 19 6 6.3495 2.4089 1.2656 20 1 5.6486 2.4031 2.1005 21 6 7.2309 1.1483 1.3088 22 6 8.2294 1.2830 2.4757 23 16 8.4792 3.0831 2.6832 24 8 7.9888 3.4831 3.9554 25 8 9.8040 3.4223 2.2968 26 6 7.3053 3.6241 1.3832 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.6887 1.8463 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 3.8575 0.6435 0.8891 33 1 3.8567 0.6437 -0.8908 34 1 3.8359 3.1229 -0.8913 35 1 3.8366 3.1235 0.8887 36 1 4.6445 2.4229 -2.3366 37 1 7.0255 3.0205 -3.7332 38 1 6.8995 1.2525 -3.5703 39 1 7.4170 1.7795 -7.1782 40 1 6.6055 0.2689 1.4613 41 1 7.7758 1.0498 0.3698 42 1 7.8097 0.8519 3.3846 43 1 9.1721 0.7963 2.2254 44 1 7.8253 3.7997 0.4416 45 1 6.7617 4.5147 1.6983 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320917013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:54 Heat of formation + Delta-G solvation = -169.904044 kcal Electronic energy + Delta-G solvation = -27839.593402 eV Core-core repulsion = 23790.808843 eV Total energy + Delta-G solvation = -4048.784559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.50889 -38.86630 -38.12542 -37.83517 -37.06703 -36.43959 -35.53594 -34.06692 -32.68555 -30.55820 -29.09018 -27.84149 -26.18625 -25.79585 -24.53987 -22.99510 -22.45718 -20.94845 -19.82942 -19.26698 -18.25995 -18.00106 -17.44413 -17.18989 -16.99043 -16.90200 -16.61324 -16.41615 -16.23305 -15.88141 -15.43930 -15.17722 -15.01784 -14.89985 -14.48779 -14.33616 -13.96081 -13.70206 -13.47785 -13.26046 -13.16294 -13.10674 -13.03293 -12.87951 -12.79241 -12.65629 -12.57953 -12.30556 -12.18192 -11.94427 -11.87347 -11.67533 -11.45611 -11.30870 -10.81806 -10.77881 -10.53538 -10.01689 -9.47346 -8.27584 -6.43372 -0.90885 1.42588 1.45351 1.48471 1.56477 1.78882 2.21030 2.38139 2.65304 2.85614 3.04131 3.07921 3.22952 3.49480 3.67391 3.74985 3.91542 3.99714 4.04431 4.21295 4.31860 4.38858 4.46136 4.54307 4.58918 4.61324 4.69876 4.75452 4.83081 4.91223 4.94245 5.07081 5.08316 5.17082 5.27817 5.31230 5.47719 5.65218 5.71228 5.86910 6.06622 6.32423 6.68286 7.19172 7.26886 7.71587 8.84419 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.008555 B = 0.003905 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3272.155352 B = 7167.940760 C = 9983.341353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.062 3.938 4 C -0.137 4.137 5 C 0.109 3.891 6 N -0.611 5.611 7 C 0.694 3.306 8 O -0.628 6.628 9 N -0.723 5.723 10 C 0.286 3.714 11 C -0.553 4.553 12 H 0.080 0.920 13 C 0.007 3.993 14 N -0.930 5.930 15 Si 0.980 3.020 16 H -0.271 1.271 17 H -0.285 1.285 18 H -0.256 1.256 19 C 0.167 3.833 20 H 0.161 0.839 21 C -0.143 4.143 22 C -0.560 4.560 23 S 2.404 3.596 24 O -0.961 6.961 25 O -0.989 6.989 26 C -0.605 4.605 27 H 0.057 0.943 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.128 0.872 36 H 0.401 0.599 37 H -0.014 1.014 38 H -0.014 1.014 39 H 0.268 0.732 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.174 0.826 43 H 0.144 0.856 44 H 0.126 0.874 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.229 -1.076 19.625 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.015 4.015 4 C -0.176 4.176 5 C -0.013 4.013 6 N -0.347 5.347 7 C 0.395 3.605 8 O -0.510 6.510 9 N -0.378 5.378 10 C 0.163 3.837 11 C -0.591 4.591 12 H 0.098 0.902 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.804 3.196 16 H -0.196 1.196 17 H -0.211 1.211 18 H -0.180 1.180 19 C 0.061 3.939 20 H 0.179 0.821 21 C -0.182 4.182 22 C -0.692 4.692 23 S 2.591 3.409 24 O -0.958 6.958 25 O -0.986 6.986 26 C -0.736 4.736 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.146 0.854 36 H 0.238 0.762 37 H 0.004 0.996 38 H 0.004 0.996 39 H 0.077 0.923 40 H 0.131 0.869 41 H 0.092 0.908 42 H 0.191 0.809 43 H 0.163 0.837 44 H 0.145 0.855 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.519 -0.724 20.087 23.167 hybrid contribution -0.823 -0.240 -1.910 2.093 sum -12.341 -0.963 18.177 21.992 Atomic orbital electron populations 1.22893 0.79604 1.03544 1.00931 1.87845 1.21400 1.29272 1.95656 1.22518 0.92752 0.84446 1.01749 1.21948 0.94134 0.98047 1.03464 1.21725 0.77373 0.96510 1.05726 1.46948 1.07053 1.77705 1.02960 1.16275 0.85119 0.77809 0.81270 1.90802 1.13579 1.59752 1.86836 1.45504 1.10488 1.76430 1.05338 1.18374 0.91789 0.93701 0.79824 1.21567 0.94039 1.51959 0.91497 0.90169 1.25990 0.97242 0.93984 1.02086 1.70137 1.15376 1.49372 1.21934 0.85221 0.78629 0.78338 0.77423 1.19648 1.21076 1.17978 1.21822 0.94150 0.90461 0.87425 0.82119 1.22435 0.97810 0.99902 0.98097 1.30243 1.09320 1.21522 1.08146 1.08382 0.75607 0.80886 0.76056 1.93567 1.81867 1.81927 1.38435 1.93555 1.37048 1.83511 1.84456 1.31077 1.15397 1.08701 1.18445 0.92443 0.93652 0.89167 0.92791 0.90433 0.89699 0.93382 0.90264 0.85408 0.76222 0.99614 0.99565 0.92325 0.86863 0.90807 0.80853 0.83740 0.85526 0.82118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.42 -8.54 10.70 -148.98 -1.59 -10.13 16 3 C 0.06 0.94 5.94 71.98 0.43 1.37 16 4 C -0.14 -2.38 5.91 30.59 0.18 -2.20 16 5 C 0.11 1.75 5.05 86.38 0.44 2.19 16 6 N -0.61 -14.68 2.48 -810.15 -2.01 -16.68 16 7 C 0.69 25.88 7.58 179.05 1.36 27.23 16 8 O -0.63 -28.51 12.49 -3.99 -0.05 -28.56 16 9 N -0.72 -29.41 5.41 -482.30 -2.61 -32.02 16 10 C 0.29 15.37 5.43 85.63 0.47 15.84 16 11 C -0.55 -29.49 9.28 25.60 0.24 -29.25 16 12 H 0.08 3.87 7.60 -2.91 -0.02 3.85 16 13 C 0.01 0.37 5.46 84.65 0.46 0.83 16 14 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 15 Si 0.98 41.76 29.54 68.60 2.03 43.79 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 C 0.17 3.10 3.01 45.99 0.14 3.24 16 20 H 0.16 1.32 7.86 -2.38 -0.02 1.30 16 21 C -0.14 -2.84 5.72 31.29 0.18 -2.66 16 22 C -0.56 -8.47 7.26 72.38 0.53 -7.94 16 23 S 2.40 51.25 6.10 -56.49 -0.34 50.90 16 24 O -0.96 -23.07 18.14 -127.47 -2.31 -25.38 16 25 O -0.99 -31.67 18.15 -127.47 -2.31 -33.98 16 26 C -0.60 -12.90 6.65 72.68 0.48 -12.42 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.36 6.52 -2.39 -0.02 1.35 16 35 H 0.13 0.99 7.96 -2.39 -0.02 0.97 16 36 H 0.40 13.71 6.14 -92.71 -0.57 13.14 16 37 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 38 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 2.18 5.81 -2.38 -0.01 2.16 16 42 H 0.17 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.13 3.82 6.11 -2.39 -0.01 3.80 16 45 H 0.16 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -85.63 378.09 -2.36 -87.98 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.42 Total: 21.51 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 6.14 Total: -2.17 kcal Atomic # 7 Polarization: -99.62 SS G_CDS: -4.34 Total: -103.96 kcal Atomic # 8 Polarization: -91.79 SS G_CDS: -6.27 Total: -98.06 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 51.25 SS G_CDS: -0.34 Total: 50.90 kcal Total: -85.63 -2.36 -87.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320917013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.919 kcal (2) G-P(sol) polarization free energy of solvation -85.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds