Wall clock time and date at job start Tue Mar 31 2020 17:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34783 * 119.99604 * 2 1 4 4 O 1.21276 * 120.00227 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99565 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.46897 * 180.02562 * 5 3 2 7 7 C 1.34775 * 119.99988 * 180.02562 * 6 5 3 8 8 O 1.21542 * 120.00085 * 359.97438 * 7 6 5 9 9 C 1.47866 * 120.00013 * 180.02562 * 7 6 5 10 10 C 1.39618 * 120.10949 * 359.97376 * 9 7 6 11 11 C 1.37984 * 120.00410 * 180.02562 * 10 9 7 12 12 C 1.38247 * 120.23104 * 0.04724 * 11 10 9 13 13 C 1.38977 * 120.21572 * 359.95408 * 12 11 10 14 14 N 1.39714 * 120.00447 * 180.02562 * 13 12 11 15 15 C 1.46496 * 119.99616 * 359.97426 * 14 13 12 16 16 C 1.50706 * 109.47225 * 179.97438 * 15 14 13 17 17 O 1.21290 * 119.99652 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99893 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99478 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00095 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99647 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00282 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99757 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46855 * 60.00537 * 23 21 19 25 25 H 1.48506 * 109.46822 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47359 * 300.00375 * 23 21 19 27 27 C 1.38685 * 119.99381 * 0.02562 * 13 12 11 28 28 H 1.09005 * 109.46457 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47536 * 300.00198 * 1 2 3 30 30 H 1.08997 * 109.46742 * 60.00559 * 1 2 3 31 31 H 0.97002 * 120.00179 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47056 * 60.00396 * 5 3 2 33 33 H 1.08997 * 109.47106 * 299.99729 * 5 3 2 34 34 H 0.97009 * 119.99986 * 0.02562 * 6 5 3 35 35 H 1.08001 * 119.99706 * 0.04759 * 10 9 7 36 36 H 1.07998 * 119.88179 * 180.02562 * 11 10 9 37 37 H 1.07999 * 119.88811 * 179.97438 * 12 11 10 38 38 H 0.96999 * 119.99907 * 179.97438 * 14 13 12 39 39 H 1.08994 * 109.47497 * 300.00534 * 15 14 13 40 40 H 1.09008 * 109.47251 * 60.00103 * 15 14 13 41 41 H 0.96990 * 120.00226 * 0.02562 * 18 16 15 42 42 H 0.97001 * 120.00260 * 179.97438 * 22 21 19 43 43 H 1.08001 * 120.11286 * 179.72940 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6459 1.1673 0.0006 6 7 4.1342 2.5485 0.0011 7 6 5.4592 2.7948 0.0011 8 8 6.2491 1.8710 0.0012 9 6 5.9521 4.1889 0.0022 10 6 5.0468 5.2518 0.0026 11 6 5.5091 6.5519 0.0031 12 6 6.8677 6.8076 0.0022 13 6 7.7772 5.7566 0.0017 14 7 9.1492 6.0201 0.0013 15 6 9.6293 7.4041 0.0008 16 6 11.1363 7.4132 0.0011 17 8 11.7490 6.3664 0.0012 18 7 11.8032 8.5844 0.0002 19 6 13.1742 8.5925 0.0010 20 1 13.7197 7.6604 0.0019 21 6 13.8617 9.7999 -0.0005 22 7 13.1979 10.9341 -0.0021 23 14 15.7297 9.8110 -0.0001 24 1 16.2290 9.1124 -1.2117 25 1 16.2163 11.2141 -0.0013 26 1 16.2287 9.1155 1.2133 27 6 7.3226 4.4464 0.0017 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9501 -0.8400 0.0004 32 1 4.0096 0.6533 -0.8892 33 1 4.0089 0.6537 0.8908 34 1 3.5038 3.2858 0.0014 35 1 3.9846 5.0564 0.0029 36 1 4.8071 7.3726 0.0038 37 1 7.2235 7.8273 0.0021 38 1 9.7839 5.2865 0.0014 39 1 9.2627 7.9156 -0.8891 40 1 9.2631 7.9161 0.8908 41 1 11.3132 9.4214 -0.0003 42 1 13.6779 11.7770 -0.0028 43 1 8.0276 3.6283 -0.0031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321684944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:28 Heat of formation + Delta-G solvation = -77.069585 kcal Electronic energy + Delta-G solvation = -26492.404285 eV Core-core repulsion = 22344.494130 eV Total energy + Delta-G solvation = -4147.910154 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.68361 -39.86739 -38.86405 -38.07260 -35.35159 -35.11689 -34.67842 -33.96719 -31.42874 -31.21547 -30.19236 -28.98470 -26.71882 -26.27621 -24.54449 -23.26978 -22.10553 -21.18092 -20.45576 -19.44864 -18.69357 -18.10069 -17.38489 -17.01717 -16.41709 -16.28682 -16.13544 -15.64202 -15.30893 -15.12213 -15.04463 -14.80578 -14.47107 -14.05761 -13.96734 -13.83179 -13.57722 -13.49015 -13.35116 -13.07505 -12.84874 -12.72760 -12.29013 -11.98811 -11.69164 -11.59883 -11.19107 -11.12385 -10.58130 -10.51529 -10.32329 -10.13801 -10.03131 -9.79605 -9.63554 -9.47832 -8.91459 -8.64395 -8.12030 -7.26921 -6.53338 -3.95212 0.91531 1.61458 1.98946 2.34393 2.84571 3.04765 3.13156 3.20835 3.24582 3.61732 3.71750 3.98393 4.08282 4.11744 4.58961 4.67638 4.82850 4.83116 4.89188 4.94116 4.96617 5.14454 5.14595 5.24080 5.30108 5.55005 5.59532 5.69194 5.73002 5.85754 5.94904 5.97141 6.07219 6.29784 6.40290 6.50068 6.77618 6.78790 7.24749 7.44390 7.46654 7.53724 7.90612 7.98609 8.04451 8.43879 9.03417 9.37090 9.85622 10.63513 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.042826 B = 0.001590 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.646954 B =17608.717579 C =18236.615929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.732 5.732 3 C 0.509 3.491 4 O -0.534 6.534 5 C 0.101 3.899 6 N -0.719 5.719 7 C 0.566 3.434 8 O -0.537 6.537 9 C -0.091 4.091 10 C -0.156 4.156 11 C -0.076 4.076 12 C -0.178 4.178 13 C 0.221 3.779 14 N -0.722 5.722 15 C 0.112 3.888 16 C 0.428 3.572 17 O -0.594 6.594 18 N -0.550 5.550 19 C -0.306 4.306 20 H 0.105 0.895 21 C 0.027 3.973 22 N -0.896 5.896 23 Si 0.933 3.067 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.272 1.272 27 C -0.137 4.137 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.406 0.594 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.413 0.587 35 H 0.119 0.881 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.413 0.587 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.395 0.605 42 H 0.275 0.725 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.576 -15.733 0.004 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.384 5.384 3 C 0.294 3.706 4 O -0.410 6.410 5 C -0.027 4.027 6 N -0.376 5.376 7 C 0.354 3.646 8 O -0.414 6.414 9 C -0.095 4.095 10 C -0.177 4.177 11 C -0.095 4.095 12 C -0.201 4.201 13 C 0.115 3.885 14 N -0.352 5.352 15 C -0.016 4.016 16 C 0.214 3.786 17 O -0.480 6.480 18 N -0.185 5.185 19 C -0.435 4.435 20 H 0.122 0.878 21 C -0.176 4.176 22 N -0.536 5.536 23 Si 0.760 3.240 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.198 1.198 27 C -0.160 4.160 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.240 0.760 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.252 0.748 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.252 0.748 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.229 0.771 42 H 0.084 0.916 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.889 -15.909 0.002 29.540 hybrid contribution 0.683 0.294 0.000 0.744 sum -24.207 -15.615 0.002 28.806 Atomic orbital electron populations 1.21590 0.78917 1.02581 1.02645 1.45687 1.08159 1.08615 1.75919 1.20633 0.90032 0.84078 0.75820 1.90722 1.70010 1.31177 1.49090 1.21027 0.90313 0.86192 1.05144 1.45606 1.07674 1.07825 1.76457 1.18380 0.81345 0.89281 0.75544 1.90772 1.55328 1.45827 1.49478 1.19358 0.93765 0.91577 1.04822 1.20928 0.98437 0.92397 1.05981 1.20778 0.94844 0.96274 0.97559 1.20913 0.92858 0.98405 1.07961 1.17752 0.84451 0.92956 0.93344 1.44559 1.02907 1.07873 1.79908 1.20967 0.94669 0.83997 1.01992 1.19724 0.88143 0.85150 0.85603 1.90515 1.68852 1.31660 1.56932 1.41780 1.07382 1.06455 1.62886 1.19688 0.80954 0.94557 1.48329 0.87763 1.25302 1.00969 0.94578 0.96737 1.69596 1.36911 0.97706 1.49413 0.85877 0.81744 0.77192 0.79198 1.19766 1.20829 1.19771 1.20618 0.94615 0.95257 1.05538 0.90329 0.91944 0.91950 0.75958 0.88091 0.88098 0.74770 0.86274 0.85635 0.85465 0.74806 0.90536 0.90542 0.77137 0.91556 0.84816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 10.70 59.85 0.64 0.95 16 2 N -0.73 -3.04 5.71 -67.07 -0.38 -3.42 16 3 C 0.51 3.74 7.90 -10.98 -0.09 3.66 16 4 O -0.53 -5.83 15.67 5.56 0.09 -5.75 16 5 C 0.10 0.73 6.15 -5.19 -0.03 0.70 16 6 N -0.72 -7.10 5.48 -62.43 -0.34 -7.44 16 7 C 0.57 7.30 7.77 -12.32 -0.10 7.20 16 8 O -0.54 -8.42 16.34 5.33 0.09 -8.34 16 9 C -0.09 -1.20 5.87 -104.99 -0.62 -1.81 16 10 C -0.16 -1.73 9.54 -39.16 -0.37 -2.10 16 11 C -0.08 -0.83 10.02 -39.67 -0.40 -1.23 16 12 C -0.18 -2.28 9.31 -39.30 -0.37 -2.64 16 13 C 0.22 3.27 6.65 -83.83 -0.56 2.72 16 14 N -0.72 -12.01 5.71 -59.84 -0.34 -12.35 16 15 C 0.11 1.91 5.39 -5.19 -0.03 1.88 16 16 C 0.43 9.73 7.85 -10.98 -0.09 9.65 16 17 O -0.59 -15.53 15.24 5.55 0.08 -15.44 16 18 N -0.55 -13.42 5.29 -10.96 -0.06 -13.47 16 19 C -0.31 -8.30 9.68 -14.93 -0.14 -8.44 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 21 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 22 N -0.90 -23.59 13.05 55.50 0.72 -22.87 16 23 Si 0.93 20.53 29.55 -169.99 -5.02 15.50 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 27 C -0.14 -2.00 9.44 -38.97 -0.37 -2.36 16 28 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.41 0.47 8.83 -40.82 -0.36 0.11 16 32 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 3.86 5.47 -40.82 -0.22 3.64 16 35 H 0.12 1.04 6.40 -52.49 -0.34 0.71 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 1.48 6.71 -52.49 -0.35 1.13 16 38 H 0.41 7.44 7.45 -40.82 -0.30 7.14 16 39 H 0.08 1.17 7.94 -51.93 -0.41 0.76 16 40 H 0.08 1.17 7.94 -51.92 -0.41 0.76 16 41 H 0.39 9.10 7.90 -40.82 -0.32 8.78 16 42 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.13 2.03 7.65 -52.49 -0.40 1.63 16 LS Contribution 375.66 15.07 5.66 5.66 Total: -1.00 -34.54 375.66 -7.28 -41.82 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -5.17 Total: 17.34 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -2.61 Total: 8.75 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.40 Total: -59.56 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: 0.26 Total: -29.53 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.54 -7.28 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321684944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.247 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds