Wall clock time and date at job start Tue Mar 31 2020 17:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34783 * 119.99604 * 2 1 4 4 O 1.21276 * 120.00227 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99565 * 179.97438 * 3 2 1 6 6 N 1.46496 * 109.46897 * 180.02562 * 5 3 2 7 7 C 1.34775 * 119.99988 * 180.02562 * 6 5 3 8 8 O 1.21542 * 120.00085 * 359.97438 * 7 6 5 9 9 C 1.47866 * 120.00013 * 180.02562 * 7 6 5 10 10 C 1.39618 * 120.10949 * 359.97376 * 9 7 6 11 11 C 1.37984 * 120.00410 * 180.02562 * 10 9 7 12 12 C 1.38247 * 120.23104 * 0.04724 * 11 10 9 13 13 C 1.38977 * 120.21572 * 359.95408 * 12 11 10 14 14 N 1.39714 * 120.00447 * 180.02562 * 13 12 11 15 15 C 1.46496 * 119.99616 * 359.97426 * 14 13 12 16 16 C 1.50706 * 109.47225 * 179.97438 * 15 14 13 17 17 O 1.21290 * 119.99652 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99893 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99478 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00095 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99647 * 179.97438 * 19 18 16 22 22 N 1.31410 * 120.00282 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99757 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46855 * 60.00537 * 23 21 19 25 25 H 1.48506 * 109.46822 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47359 * 300.00375 * 23 21 19 27 27 C 1.38685 * 119.99381 * 0.02562 * 13 12 11 28 28 H 1.09005 * 109.46457 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47536 * 300.00198 * 1 2 3 30 30 H 1.08997 * 109.46742 * 60.00559 * 1 2 3 31 31 H 0.97002 * 120.00179 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47056 * 60.00396 * 5 3 2 33 33 H 1.08997 * 109.47106 * 299.99729 * 5 3 2 34 34 H 0.97009 * 119.99986 * 0.02562 * 6 5 3 35 35 H 1.08001 * 119.99706 * 0.04759 * 10 9 7 36 36 H 1.07998 * 119.88179 * 180.02562 * 11 10 9 37 37 H 1.07999 * 119.88811 * 179.97438 * 12 11 10 38 38 H 0.96999 * 119.99907 * 179.97438 * 14 13 12 39 39 H 1.08994 * 109.47497 * 300.00534 * 15 14 13 40 40 H 1.09008 * 109.47251 * 60.00103 * 15 14 13 41 41 H 0.96990 * 120.00226 * 0.02562 * 18 16 15 42 42 H 0.97001 * 120.00260 * 179.97438 * 22 21 19 43 43 H 1.08001 * 120.11286 * 179.72940 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6459 1.1673 0.0006 6 7 4.1342 2.5485 0.0011 7 6 5.4592 2.7948 0.0011 8 8 6.2491 1.8710 0.0012 9 6 5.9521 4.1889 0.0022 10 6 5.0468 5.2518 0.0026 11 6 5.5091 6.5519 0.0031 12 6 6.8677 6.8076 0.0022 13 6 7.7772 5.7566 0.0017 14 7 9.1492 6.0201 0.0013 15 6 9.6293 7.4041 0.0008 16 6 11.1363 7.4132 0.0011 17 8 11.7490 6.3664 0.0012 18 7 11.8032 8.5844 0.0002 19 6 13.1742 8.5925 0.0010 20 1 13.7197 7.6604 0.0019 21 6 13.8617 9.7999 -0.0005 22 7 13.1979 10.9341 -0.0021 23 14 15.7297 9.8110 -0.0001 24 1 16.2290 9.1124 -1.2117 25 1 16.2163 11.2141 -0.0013 26 1 16.2287 9.1155 1.2133 27 6 7.3226 4.4464 0.0017 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.9501 -0.8400 0.0004 32 1 4.0096 0.6533 -0.8892 33 1 4.0089 0.6537 0.8908 34 1 3.5038 3.2858 0.0014 35 1 3.9846 5.0564 0.0029 36 1 4.8071 7.3726 0.0038 37 1 7.2235 7.8273 0.0021 38 1 9.7839 5.2865 0.0014 39 1 9.2627 7.9156 -0.8891 40 1 9.2631 7.9161 0.8908 41 1 11.3132 9.4214 -0.0003 42 1 13.6779 11.7770 -0.0028 43 1 8.0276 3.6283 -0.0031 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321684944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:26 Heat of formation + Delta-G solvation = -105.528204 kcal Electronic energy + Delta-G solvation = -26493.638343 eV Core-core repulsion = 22344.494130 eV Total energy + Delta-G solvation = -4149.144213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.50885 -40.73237 -40.29758 -39.38721 -36.49263 -35.95302 -35.75263 -35.45624 -33.38310 -32.17904 -31.30232 -29.73181 -28.16811 -26.81867 -26.22238 -24.30018 -23.10643 -21.74225 -21.57152 -21.01388 -20.02301 -19.57959 -18.44959 -17.77665 -17.47186 -17.08260 -17.04774 -16.85962 -16.59087 -16.35650 -16.17854 -15.97338 -15.89316 -15.58174 -14.95462 -14.59746 -14.55645 -14.53069 -14.27826 -14.25223 -13.94439 -13.53268 -13.48934 -13.22787 -13.08649 -12.91091 -12.61688 -12.47689 -12.21249 -12.13719 -11.57834 -11.23444 -11.14582 -11.13261 -10.54238 -10.39475 -10.17969 -10.09454 -9.87716 -8.51569 -8.41104 -6.01271 -0.09077 0.62711 1.37392 1.41858 1.42451 1.52107 1.71303 1.84994 1.92870 2.19784 2.36429 2.49423 2.98370 3.15877 3.16819 3.58537 3.74051 3.99463 4.17718 4.23572 4.27501 4.28982 4.36769 4.43047 4.47339 4.50261 4.55014 4.64031 4.68187 4.96925 4.99294 5.16413 5.28509 5.33262 5.37208 5.40546 5.54296 5.78345 5.91827 6.32992 6.37081 6.40848 6.51463 6.70538 7.04673 7.05371 7.08660 7.45212 7.98090 8.64866 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.042826 B = 0.001590 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.646954 B =17608.717579 C =18236.615929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.716 5.716 3 C 0.510 3.490 4 O -0.573 6.573 5 C 0.098 3.902 6 N -0.708 5.708 7 C 0.565 3.435 8 O -0.573 6.573 9 C -0.103 4.103 10 C -0.142 4.142 11 C -0.069 4.069 12 C -0.178 4.178 13 C 0.203 3.797 14 N -0.737 5.737 15 C 0.129 3.871 16 C 0.427 3.573 17 O -0.632 6.632 18 N -0.558 5.558 19 C -0.341 4.341 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.913 5.913 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.268 1.268 26 H -0.272 1.272 27 C -0.155 4.155 28 H 0.111 0.889 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.422 0.578 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.417 0.583 35 H 0.147 0.853 36 H 0.162 0.838 37 H 0.142 0.858 38 H 0.402 0.598 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.401 0.599 42 H 0.280 0.720 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.819 -15.378 0.005 31.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.368 5.368 3 C 0.296 3.704 4 O -0.453 6.453 5 C -0.029 4.029 6 N -0.363 5.363 7 C 0.353 3.647 8 O -0.454 6.454 9 C -0.107 4.107 10 C -0.163 4.163 11 C -0.088 4.088 12 C -0.201 4.201 13 C 0.099 3.901 14 N -0.367 5.367 15 C 0.001 3.999 16 C 0.215 3.785 17 O -0.520 6.520 18 N -0.194 5.194 19 C -0.471 4.471 20 H 0.098 0.902 21 C -0.207 4.207 22 N -0.553 5.553 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.193 1.193 26 H -0.198 1.198 27 C -0.179 4.179 28 H 0.130 0.870 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.260 0.740 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.257 0.743 35 H 0.164 0.836 36 H 0.180 0.820 37 H 0.160 0.840 38 H 0.238 0.762 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.235 0.765 42 H 0.090 0.910 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -27.220 -15.576 0.003 31.362 hybrid contribution 1.200 0.080 -0.001 1.203 sum -26.020 -15.496 0.002 30.285 Atomic orbital electron populations 1.21722 0.78184 1.04491 1.01686 1.45632 1.08661 1.08463 1.74081 1.20613 0.89884 0.84357 0.75527 1.90703 1.70587 1.32646 1.51361 1.21218 0.90469 0.84890 1.06332 1.45537 1.06622 1.09268 1.74862 1.18399 0.82003 0.88901 0.75358 1.90752 1.56367 1.46701 1.51543 1.19500 0.93481 0.92487 1.05187 1.21275 0.99448 0.91943 1.03631 1.21196 0.94623 0.97199 0.95752 1.21200 0.93408 0.98445 1.07017 1.17889 0.83777 0.93603 0.94847 1.44524 1.03604 1.07047 1.81551 1.20861 0.89983 0.84936 1.04128 1.20707 0.90594 0.83964 0.83271 1.90488 1.70582 1.32991 1.57988 1.41802 1.06751 1.07240 1.63612 1.19654 0.82473 0.94238 1.50715 0.90192 1.26029 1.04984 0.93916 0.95744 1.69647 1.38380 0.98054 1.49171 0.84993 0.76689 0.77750 0.78943 1.19745 1.19284 1.19750 1.20574 0.95280 0.94965 1.07104 0.87018 0.92910 0.92920 0.74046 0.86896 0.86903 0.74299 0.83564 0.82021 0.84004 0.76159 0.88197 0.88205 0.76461 0.91019 0.86753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.43 10.70 127.77 1.37 1.80 16 2 N -0.72 -4.54 5.71 -484.51 -2.77 -7.31 16 3 C 0.51 6.78 7.90 87.66 0.69 7.47 16 4 O -0.57 -11.93 15.67 -3.02 -0.05 -11.98 16 5 C 0.10 1.28 6.15 85.64 0.53 1.81 16 6 N -0.71 -13.15 5.48 -469.70 -2.57 -15.72 16 7 C 0.56 14.41 7.77 86.79 0.67 15.08 16 8 O -0.57 -18.38 16.34 -3.85 -0.06 -18.44 16 9 C -0.10 -2.63 5.87 -20.10 -0.12 -2.75 16 10 C -0.14 -2.78 9.54 22.54 0.21 -2.56 16 11 C -0.07 -1.28 10.02 22.21 0.22 -1.06 16 12 C -0.18 -4.13 9.31 22.45 0.21 -3.92 16 13 C 0.20 5.93 6.65 38.17 0.25 6.18 16 14 N -0.74 -24.78 5.71 -343.23 -1.96 -26.74 16 15 C 0.13 4.29 5.39 85.64 0.46 4.75 16 16 C 0.43 19.77 7.85 87.66 0.69 20.46 16 17 O -0.63 -34.34 15.24 -3.06 -0.05 -34.38 16 18 N -0.56 -27.67 5.29 -306.98 -1.62 -29.29 16 19 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 20 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 21 C -0.01 -0.30 5.50 84.93 0.47 0.17 16 22 N -0.91 -47.66 13.05 21.66 0.28 -47.38 16 23 Si 0.99 41.98 29.55 68.60 2.03 44.01 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 C -0.16 -4.66 9.44 22.67 0.21 -4.44 16 28 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.42 -0.05 8.83 -92.71 -0.82 -0.87 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.42 7.09 5.47 -92.70 -0.51 6.58 16 35 H 0.15 2.05 6.40 -2.91 -0.02 2.03 16 36 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.14 2.85 6.71 -2.91 -0.02 2.83 16 38 H 0.40 15.23 7.45 -92.71 -0.69 14.54 16 39 H 0.10 2.88 7.94 -2.39 -0.02 2.86 16 40 H 0.10 2.87 7.94 -2.38 -0.02 2.86 16 41 H 0.40 18.54 7.90 -92.72 -0.73 17.81 16 42 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 43 H 0.11 3.78 7.65 -2.91 -0.02 3.75 16 Total: -1.00 -77.11 375.66 -1.72 -78.83 By element: Atomic # 1 Polarization: 45.21 SS G_CDS: -1.64 Total: 43.57 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 6.69 Total: 24.84 kcal Atomic # 7 Polarization: -117.81 SS G_CDS: -8.64 Total: -126.45 kcal Atomic # 8 Polarization: -64.65 SS G_CDS: -0.16 Total: -64.81 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -77.11 -1.72 -78.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321684944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.699 kcal (2) G-P(sol) polarization free energy of solvation -77.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds