Wall clock time and date at job start Tue Mar 31 2020 18:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00130 * 2 1 4 4 H 1.48498 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47183 * 300.00010 * 3 2 1 6 6 H 1.48506 * 109.47114 * 59.99926 * 3 2 1 7 7 C 1.38811 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00463 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99804 * 0.27312 * 7 2 1 10 10 C 1.46500 * 120.00141 * 174.66251 * 9 7 2 11 11 C 1.53001 * 115.55032 * 279.48159 * 10 9 7 12 12 N 1.46494 * 109.47197 * 324.97042 * 11 10 9 13 13 C 1.34776 * 120.00400 * 174.79843 * 12 11 10 14 14 O 1.21290 * 119.99787 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00680 * 179.97438 * 13 12 11 16 16 H 1.08991 * 109.69772 * 299.44570 * 15 13 12 17 17 C 1.53412 * 109.69256 * 60.00141 * 15 13 12 18 18 O 1.42834 * 108.37056 * 184.42051 * 17 15 13 19 19 C 1.35905 * 117.85522 * 310.80692 * 18 17 15 20 20 C 1.39131 * 118.46655 * 197.19997 * 19 18 17 21 21 C 1.37976 * 120.24917 * 180.19478 * 20 19 18 22 22 C 1.38474 * 119.93207 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.03877 * 179.89374 * 22 21 20 24 24 C 1.38291 * 119.92844 * 359.91491 * 22 21 20 25 25 C 1.38353 * 121.79565 * 17.25661 * 19 18 17 26 26 C 1.50771 * 121.40755 * 359.45735 * 25 19 18 27 27 C 1.52996 * 117.50099 * 133.77311 * 10 9 7 28 28 C 1.52992 * 60.00135 * 252.51328 * 27 10 9 29 29 H 0.97005 * 119.99695 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00247 * 354.67156 * 9 7 2 31 31 H 1.09006 * 109.46968 * 84.96924 * 11 10 9 32 32 H 1.09000 * 109.47309 * 204.96423 * 11 10 9 33 33 H 0.97003 * 120.00153 * 354.79707 * 12 11 10 34 34 H 1.08999 * 109.68475 * 304.13917 * 17 15 13 35 35 H 1.08998 * 109.68591 * 64.66080 * 17 15 13 36 36 H 1.07994 * 119.87840 * 0.21852 * 20 19 18 37 37 H 1.07997 * 120.03378 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.85680 * 180.02562 * 24 22 21 39 39 H 1.08994 * 109.43326 * 257.80415 * 26 25 19 40 40 H 1.09002 * 109.43640 * 137.93152 * 26 25 19 41 41 H 1.08998 * 117.49775 * 0.02562 * 27 10 9 42 42 H 1.08999 * 117.49874 * 145.02070 * 27 10 9 43 43 H 1.09007 * 117.50013 * 252.51218 * 28 27 10 44 44 H 1.08995 * 117.50517 * 107.49031 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 -0.0046 10 6 2.0538 -3.6538 -0.1220 11 6 2.4742 -4.0440 -1.5404 12 7 1.4481 -3.6089 -2.4911 13 6 1.6521 -3.7524 -3.8156 14 8 2.6856 -4.2413 -4.2205 15 6 0.5963 -3.3054 -4.7936 16 1 -0.3255 -3.8599 -4.6179 17 6 0.3365 -1.8031 -4.6230 18 8 -0.7377 -1.4310 -5.4877 19 6 -0.6754 -1.8295 -6.7855 20 6 -1.4928 -1.1935 -7.7146 21 6 -1.4622 -1.5715 -9.0412 22 6 -0.6156 -2.5879 -9.4507 23 9 -0.5854 -2.9611 -10.7487 24 6 0.1988 -3.2208 -8.5294 25 6 0.1723 -2.8425 -7.1971 26 6 1.0818 -3.5497 -6.2245 27 6 1.6684 -4.7821 0.8366 28 6 2.9919 -4.0380 1.0238 29 1 -0.4850 0.8401 -0.0004 30 1 0.3584 -2.3900 0.0694 31 1 3.4219 -3.5635 -1.7836 32 1 2.5897 -5.1262 -1.6004 33 1 0.6216 -3.2176 -2.1674 34 1 0.0649 -1.5925 -3.5886 35 1 1.2331 -1.2429 -4.8884 36 1 -2.1534 -0.4007 -7.3963 37 1 -2.0984 -1.0757 -9.7593 38 1 0.8589 -4.0131 -8.8501 39 1 2.0967 -3.1674 -6.3334 40 1 1.0737 -4.6196 -6.4326 41 1 0.8727 -4.5829 1.5545 42 1 1.7141 -5.8028 0.4569 43 1 3.9086 -4.5691 0.7672 44 1 3.0674 -3.3490 1.8650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323489868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:27 Heat of formation + Delta-G solvation = -60.044051 kcal Electronic energy + Delta-G solvation = -28558.673886 eV Core-core repulsion = 24391.582053 eV Total energy + Delta-G solvation = -4167.091834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.96221 -41.00918 -39.33880 -37.64112 -37.32672 -34.28397 -33.80790 -33.15906 -31.04594 -30.03874 -29.76598 -26.94192 -25.69273 -24.23312 -23.95120 -22.96095 -21.93259 -21.01143 -19.70593 -19.09515 -18.03277 -17.62758 -17.18687 -17.13067 -16.64307 -15.98857 -15.73314 -15.37711 -14.99346 -14.90215 -14.50263 -14.42560 -14.09972 -13.96078 -13.63658 -13.50643 -13.33776 -13.23651 -13.12568 -12.93835 -12.56074 -12.37609 -11.97703 -11.41606 -11.24153 -11.07472 -10.99606 -10.97553 -10.84727 -10.71821 -10.37766 -10.25874 -9.86959 -9.63339 -9.30396 -9.14039 -9.05220 -8.56800 -8.19643 -7.23842 -5.94511 -3.26351 0.94991 1.04022 2.78813 3.12270 3.33035 3.35518 3.41448 3.42185 3.49457 4.10151 4.31571 4.41276 4.47128 4.49607 4.51867 4.70706 4.84990 4.96083 5.11370 5.14826 5.19561 5.23222 5.39777 5.43050 5.49242 5.51611 5.55368 5.66719 5.82060 5.84508 5.92595 5.94205 5.99682 6.07217 6.11150 6.16589 6.29583 6.36700 6.53569 6.56054 6.70420 6.84097 7.28080 7.61875 7.88395 8.22990 8.48790 9.35043 9.85965 10.22061 11.26755 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003191 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.525005 B = 8772.828449 C =10279.237324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.690 5.690 10 C 0.122 3.878 11 C 0.148 3.852 12 N -0.697 5.697 13 C 0.520 3.480 14 O -0.551 6.551 15 C -0.145 4.145 16 H 0.111 0.889 17 C 0.071 3.929 18 O -0.302 6.302 19 C 0.125 3.875 20 C -0.120 4.120 21 C -0.122 4.122 22 C 0.061 3.939 23 F -0.143 7.143 24 C -0.117 4.117 25 C -0.128 4.128 26 C -0.059 4.059 27 C -0.186 4.186 28 C -0.178 4.178 29 H 0.257 0.743 30 H 0.387 0.613 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.408 0.592 34 H 0.129 0.871 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.422 -7.306 -12.488 14.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.331 5.331 10 C 0.028 3.972 11 C 0.021 3.979 12 N -0.348 5.348 13 C 0.304 3.696 14 O -0.430 6.430 15 C -0.167 4.167 16 H 0.129 0.871 17 C -0.004 4.004 18 O -0.216 6.216 19 C 0.079 3.921 20 C -0.138 4.138 21 C -0.141 4.141 22 C 0.041 3.959 23 F -0.122 7.122 24 C -0.136 4.136 25 C -0.129 4.129 26 C -0.096 4.096 27 C -0.224 4.224 28 C -0.218 4.218 29 H 0.067 0.933 30 H 0.223 0.777 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.246 0.754 34 H 0.147 0.853 35 H 0.092 0.908 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.728 -7.375 -12.692 14.781 hybrid contribution -0.046 0.985 0.068 0.988 sum -1.774 -6.391 -12.624 14.261 Atomic orbital electron populations 1.69643 1.04971 1.25886 1.57187 1.24724 0.95504 0.97595 1.02473 0.86174 0.78975 0.84088 0.77303 1.20513 1.21711 1.21808 1.19199 0.91141 0.83302 1.43164 0.91023 1.41748 1.05692 0.98635 1.86994 1.20211 0.99831 0.88654 0.88513 1.21191 0.91124 0.97545 0.88042 1.45827 1.22134 1.61872 1.04931 1.20004 0.87432 0.79021 0.83112 1.90673 1.27956 1.45579 1.78803 1.21983 1.00208 0.98866 0.95652 0.87123 1.23103 0.89922 0.92125 0.95280 1.86117 1.45343 1.73314 1.16780 1.18820 0.95739 0.92976 0.84592 1.20468 1.01412 1.01263 0.90693 1.20894 0.99622 0.97322 0.96289 1.17466 1.00939 0.98859 0.78595 1.91479 1.95821 1.90844 1.34078 1.20840 0.99792 1.01138 0.91794 1.19724 1.00466 0.97896 0.94811 1.20322 0.98416 1.01172 0.89719 1.23254 0.99456 0.95957 1.03776 1.23185 0.93154 1.03208 1.02221 0.93335 0.77742 0.91451 0.92380 0.75440 0.85326 0.90786 0.84018 0.84235 0.84466 0.88743 0.89140 0.88984 0.89525 0.89781 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.15 13.06 55.49 0.72 -24.43 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 21.08 29.55 -169.99 -5.02 16.06 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.24 -5.88 9.88 -15.06 -0.15 -6.03 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.69 -14.88 4.44 -47.24 -0.21 -15.09 16 10 C 0.12 2.14 2.44 -131.82 -0.32 1.82 16 11 C 0.15 2.47 5.90 -4.04 -0.02 2.45 16 12 N -0.70 -11.22 5.28 -60.29 -0.32 -11.54 16 13 C 0.52 8.19 7.16 -10.99 -0.08 8.11 16 14 O -0.55 -10.17 15.80 5.55 0.09 -10.08 16 15 C -0.15 -1.90 2.76 -91.52 -0.25 -2.15 16 16 H 0.11 1.30 8.14 -51.93 -0.42 0.88 16 17 C 0.07 0.99 6.25 37.37 0.23 1.23 16 18 O -0.30 -4.29 10.27 -19.44 -0.20 -4.49 16 19 C 0.12 1.60 6.47 -39.21 -0.25 1.35 16 20 C -0.12 -1.33 9.93 -39.35 -0.39 -1.72 16 21 C -0.12 -1.25 10.02 -39.59 -0.40 -1.64 16 22 C 0.06 0.68 7.30 -39.48 -0.29 0.39 16 23 F -0.14 -1.66 17.27 2.25 0.04 -1.63 16 24 C -0.12 -1.30 9.65 -39.46 -0.38 -1.68 16 25 C -0.13 -1.55 5.75 -104.44 -0.60 -2.15 16 26 C -0.06 -0.72 4.65 -27.81 -0.13 -0.85 16 27 C -0.19 -2.81 10.10 -26.74 -0.27 -3.08 16 28 C -0.18 -2.88 10.05 -26.74 -0.27 -3.15 16 29 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.39 8.87 8.04 -40.82 -0.33 8.54 16 31 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.06 0.89 7.91 -51.93 -0.41 0.48 16 33 H 0.41 6.62 7.16 -40.82 -0.29 6.32 16 34 H 0.13 1.94 7.50 -51.93 -0.39 1.55 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 39 H 0.09 1.24 7.71 -51.93 -0.40 0.84 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 43 H 0.08 1.19 8.14 -51.92 -0.42 0.77 16 44 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 LS Contribution 374.45 15.07 5.64 5.64 Total: -1.00 -28.17 374.45 -8.93 -37.10 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -6.01 Total: 15.82 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.67 Total: -7.37 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.20 Total: -51.06 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.11 Total: -14.57 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.17 -8.93 -37.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323489868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.939 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds