Wall clock time and date at job start Tue Mar 31 2020 18:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00130 * 2 1 4 4 H 1.48498 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47183 * 300.00010 * 3 2 1 6 6 H 1.48506 * 109.47114 * 59.99926 * 3 2 1 7 7 C 1.38811 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00463 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99804 * 0.27312 * 7 2 1 10 10 C 1.46500 * 120.00141 * 174.66251 * 9 7 2 11 11 C 1.53001 * 115.55032 * 279.48159 * 10 9 7 12 12 N 1.46494 * 109.47197 * 324.97042 * 11 10 9 13 13 C 1.34776 * 120.00400 * 174.79843 * 12 11 10 14 14 O 1.21290 * 119.99787 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00680 * 179.97438 * 13 12 11 16 16 H 1.08991 * 109.69772 * 299.44570 * 15 13 12 17 17 C 1.53412 * 109.69256 * 60.00141 * 15 13 12 18 18 O 1.42834 * 108.37056 * 184.42051 * 17 15 13 19 19 C 1.35905 * 117.85522 * 310.80692 * 18 17 15 20 20 C 1.39131 * 118.46655 * 197.19997 * 19 18 17 21 21 C 1.37976 * 120.24917 * 180.19478 * 20 19 18 22 22 C 1.38474 * 119.93207 * 0.02562 * 21 20 19 23 23 F 1.35098 * 120.03877 * 179.89374 * 22 21 20 24 24 C 1.38291 * 119.92844 * 359.91491 * 22 21 20 25 25 C 1.38353 * 121.79565 * 17.25661 * 19 18 17 26 26 C 1.50771 * 121.40755 * 359.45735 * 25 19 18 27 27 C 1.52996 * 117.50099 * 133.77311 * 10 9 7 28 28 C 1.52992 * 60.00135 * 252.51328 * 27 10 9 29 29 H 0.97005 * 119.99695 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00247 * 354.67156 * 9 7 2 31 31 H 1.09006 * 109.46968 * 84.96924 * 11 10 9 32 32 H 1.09000 * 109.47309 * 204.96423 * 11 10 9 33 33 H 0.97003 * 120.00153 * 354.79707 * 12 11 10 34 34 H 1.08999 * 109.68475 * 304.13917 * 17 15 13 35 35 H 1.08998 * 109.68591 * 64.66080 * 17 15 13 36 36 H 1.07994 * 119.87840 * 0.21852 * 20 19 18 37 37 H 1.07997 * 120.03378 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.85680 * 180.02562 * 24 22 21 39 39 H 1.08994 * 109.43326 * 257.80415 * 26 25 19 40 40 H 1.09002 * 109.43640 * 137.93152 * 26 25 19 41 41 H 1.08998 * 117.49775 * 0.02562 * 27 10 9 42 42 H 1.08999 * 117.49874 * 145.02070 * 27 10 9 43 43 H 1.09007 * 117.50013 * 252.51218 * 28 27 10 44 44 H 1.08995 * 117.50517 * 107.49031 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 -0.0046 10 6 2.0538 -3.6538 -0.1220 11 6 2.4742 -4.0440 -1.5404 12 7 1.4481 -3.6089 -2.4911 13 6 1.6521 -3.7524 -3.8156 14 8 2.6856 -4.2413 -4.2205 15 6 0.5963 -3.3054 -4.7936 16 1 -0.3255 -3.8599 -4.6179 17 6 0.3365 -1.8031 -4.6230 18 8 -0.7377 -1.4310 -5.4877 19 6 -0.6754 -1.8295 -6.7855 20 6 -1.4928 -1.1935 -7.7146 21 6 -1.4622 -1.5715 -9.0412 22 6 -0.6156 -2.5879 -9.4507 23 9 -0.5854 -2.9611 -10.7487 24 6 0.1988 -3.2208 -8.5294 25 6 0.1723 -2.8425 -7.1971 26 6 1.0818 -3.5497 -6.2245 27 6 1.6684 -4.7821 0.8366 28 6 2.9919 -4.0380 1.0238 29 1 -0.4850 0.8401 -0.0004 30 1 0.3584 -2.3900 0.0694 31 1 3.4219 -3.5635 -1.7836 32 1 2.5897 -5.1262 -1.6004 33 1 0.6216 -3.2176 -2.1674 34 1 0.0649 -1.5925 -3.5886 35 1 1.2331 -1.2429 -4.8884 36 1 -2.1534 -0.4007 -7.3963 37 1 -2.0984 -1.0757 -9.7593 38 1 0.8589 -4.0131 -8.8501 39 1 2.0967 -3.1674 -6.3334 40 1 1.0737 -4.6196 -6.4326 41 1 0.8727 -4.5829 1.5545 42 1 1.7141 -5.8028 0.4569 43 1 3.9086 -4.5691 0.7672 44 1 3.0674 -3.3490 1.8650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323489868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:26 Heat of formation + Delta-G solvation = -75.817835 kcal Electronic energy + Delta-G solvation = -28559.357889 eV Core-core repulsion = 24391.582053 eV Total energy + Delta-G solvation = -4167.775836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.84820 -42.05299 -40.57823 -39.00456 -38.32984 -35.33070 -35.19334 -34.93003 -32.02634 -31.57046 -30.95289 -28.19155 -26.75083 -25.92642 -25.21558 -23.85094 -23.21740 -22.08755 -20.97729 -20.44276 -19.04406 -18.99848 -18.71792 -18.16212 -17.72467 -17.34223 -16.65652 -16.54510 -16.34007 -16.08738 -15.85094 -15.54543 -15.38108 -15.16814 -15.08116 -14.84683 -14.45021 -14.29289 -14.17335 -13.94083 -13.73686 -13.57213 -13.55846 -12.93674 -12.81671 -12.38052 -12.22373 -12.18230 -12.15572 -11.91455 -11.83817 -11.74756 -11.69101 -11.01704 -10.83791 -10.61893 -10.01236 -9.90847 -9.14202 -9.06608 -7.93021 -5.21802 0.08684 0.13695 1.45516 1.49748 1.51927 1.55720 2.06705 2.23292 2.51097 2.55050 3.04552 3.19993 3.38644 3.41713 3.48181 3.57871 3.65507 3.72352 3.85203 3.91284 4.06900 4.08108 4.20005 4.29139 4.36149 4.42159 4.49421 4.56275 4.76947 4.81054 4.81860 4.86933 4.88939 4.95691 5.05864 5.07078 5.11883 5.18106 5.24605 5.41720 5.50476 5.61706 5.66824 6.28511 6.29407 6.57869 7.19078 7.36990 8.07107 8.32779 9.28263 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003191 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.525005 B = 8772.828449 C =10279.237324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.056 4.056 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.223 4.223 8 H 0.065 0.935 9 N -0.695 5.695 10 C 0.096 3.904 11 C 0.155 3.845 12 N -0.697 5.697 13 C 0.521 3.479 14 O -0.577 6.577 15 C -0.134 4.134 16 H 0.127 0.873 17 C 0.077 3.923 18 O -0.314 6.314 19 C 0.101 3.899 20 C -0.121 4.121 21 C -0.114 4.114 22 C 0.054 3.946 23 F -0.145 7.145 24 C -0.117 4.117 25 C -0.133 4.133 26 C -0.054 4.054 27 C -0.160 4.160 28 C -0.177 4.177 29 H 0.250 0.750 30 H 0.379 0.621 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.408 0.592 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.153 0.847 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 -8.517 -13.458 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.250 4.250 3 Si 0.782 3.218 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.225 1.225 7 C -0.355 4.355 8 H 0.083 0.917 9 N -0.334 5.334 10 C 0.004 3.996 11 C 0.028 3.972 12 N -0.347 5.347 13 C 0.307 3.693 14 O -0.458 6.458 15 C -0.155 4.155 16 H 0.145 0.855 17 C 0.001 3.999 18 O -0.228 6.228 19 C 0.056 3.944 20 C -0.140 4.140 21 C -0.132 4.132 22 C 0.035 3.965 23 F -0.124 7.124 24 C -0.136 4.136 25 C -0.134 4.134 26 C -0.091 4.091 27 C -0.197 4.197 28 C -0.216 4.216 29 H 0.059 0.941 30 H 0.213 0.787 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.245 0.755 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.173 0.827 37 H 0.184 0.816 38 H 0.170 0.830 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.136 0.864 43 H 0.126 0.874 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.775 -8.618 -13.662 16.250 hybrid contribution 0.004 1.296 0.339 1.340 sum -1.771 -7.321 -13.324 15.306 Atomic orbital electron populations 1.69742 1.05811 1.25733 1.59238 1.25226 0.96101 0.99777 1.03867 0.85407 0.78295 0.81524 0.76525 1.19983 1.22294 1.22466 1.19325 0.90902 0.84534 1.40717 0.91677 1.41725 1.05365 0.99352 1.87004 1.20433 1.01463 0.88237 0.89442 1.21101 0.90274 0.98442 0.87369 1.45859 1.21954 1.61752 1.05173 1.20371 0.87487 0.78245 0.83160 1.90657 1.29151 1.46866 1.79144 1.21907 0.99928 0.98182 0.95490 0.85494 1.22902 0.89624 0.92700 0.94656 1.86093 1.45258 1.73785 1.17624 1.19121 0.97026 0.93961 0.84276 1.20691 1.01158 1.01378 0.90763 1.21167 0.99160 0.96609 0.96299 1.17634 1.01188 0.99181 0.78518 1.91479 1.95848 1.90900 1.34178 1.20993 0.99891 1.01406 0.91319 1.19691 1.00534 0.97990 0.95178 1.20268 0.97815 1.01891 0.89111 1.23304 0.98291 0.96414 1.01719 1.23214 0.94735 1.03197 1.00500 0.94052 0.78678 0.93530 0.90361 0.75458 0.86834 0.91696 0.82665 0.81577 0.82956 0.89875 0.87960 0.89402 0.86449 0.87417 0.90285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.55 13.06 21.65 0.28 -52.27 16 2 C -0.06 -2.95 5.50 84.86 0.47 -2.48 16 3 Si 0.95 43.85 29.55 68.60 2.03 45.88 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 6 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.22 -11.10 9.88 84.03 0.83 -10.27 16 8 H 0.07 3.29 7.83 -2.91 -0.02 3.27 16 9 N -0.69 -29.96 4.44 -303.36 -1.35 -31.31 16 10 C 0.10 3.28 2.44 3.60 0.01 3.29 16 11 C 0.15 5.01 5.90 86.38 0.51 5.52 16 12 N -0.70 -22.15 5.28 -463.06 -2.44 -24.60 16 13 C 0.52 16.21 7.16 87.66 0.63 16.84 16 14 O -0.58 -21.01 15.80 -3.06 -0.05 -21.06 16 15 C -0.13 -3.43 2.76 -11.38 -0.03 -3.46 16 16 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 17 C 0.08 2.19 6.25 72.12 0.45 2.64 16 18 O -0.31 -8.91 10.27 -92.48 -0.95 -9.86 16 19 C 0.10 2.52 6.47 22.51 0.15 2.67 16 20 C -0.12 -2.50 9.93 22.42 0.22 -2.28 16 21 C -0.11 -2.05 10.02 22.26 0.22 -1.83 16 22 C 0.05 1.11 7.30 22.34 0.16 1.27 16 23 F -0.15 -3.08 17.27 44.97 0.78 -2.30 16 24 C -0.12 -2.42 9.65 22.35 0.22 -2.20 16 25 C -0.13 -3.08 5.75 -19.75 -0.11 -3.19 16 26 C -0.05 -1.27 4.65 29.89 0.14 -1.13 16 27 C -0.16 -4.40 10.10 30.59 0.31 -4.09 16 28 C -0.18 -5.42 10.05 30.59 0.31 -5.11 16 29 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16 30 H 0.38 17.50 8.04 -92.71 -0.75 16.75 16 31 H 0.05 1.69 8.13 -2.38 -0.02 1.68 16 32 H 0.08 2.22 7.91 -2.39 -0.02 2.20 16 33 H 0.41 13.22 7.16 -92.71 -0.66 12.56 16 34 H 0.11 3.56 7.50 -2.39 -0.02 3.54 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 37 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 39 H 0.08 2.16 7.71 -2.39 -0.02 2.14 16 40 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.12 2.56 8.05 -2.39 -0.02 2.54 16 43 H 0.11 2.77 8.14 -2.38 -0.02 2.75 16 44 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -59.85 374.45 2.41 -57.43 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -0.36 Total: 41.91 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 4.47 Total: -3.83 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -3.51 Total: -108.18 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.00 Total: -30.92 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -59.85 2.41 -57.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323489868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.383 kcal (2) G-P(sol) polarization free energy of solvation -59.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds