Wall clock time and date at job start Tue Mar 31 2020 18:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00272 * 2 1 4 4 H 1.48498 * 109.47140 * 270.00666 * 3 2 1 5 5 H 1.48502 * 109.46783 * 29.99769 * 3 2 1 6 6 H 1.48491 * 109.47417 * 150.00177 * 3 2 1 7 7 C 1.38821 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99993 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99629 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99848 * 172.31493 * 9 7 2 11 11 C 1.53009 * 115.56062 * 320.04414 * 10 9 7 12 12 N 1.46494 * 109.46726 * 279.77872 * 11 10 9 13 13 C 1.34777 * 119.99550 * 185.02540 * 12 11 10 14 14 O 1.21277 * 120.00482 * 359.97438 * 13 12 11 15 15 C 1.50708 * 120.00220 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.69168 * 59.99556 * 15 13 12 17 17 C 1.53400 * 109.69434 * 299.44542 * 15 13 12 18 18 O 1.42814 * 108.37834 * 175.63044 * 17 15 13 19 19 C 1.35897 * 117.87817 * 49.15650 * 18 17 15 20 20 C 1.39136 * 118.46216 * 163.00193 * 19 18 17 21 21 C 1.37968 * 120.24885 * 179.59129 * 20 19 18 22 22 C 1.38485 * 119.92907 * 359.97438 * 21 20 19 23 23 F 1.35101 * 120.03335 * 180.10986 * 22 21 20 24 24 C 1.38289 * 119.92972 * 0.08239 * 22 21 20 25 25 C 1.38351 * 121.79778 * 342.72668 * 19 18 17 26 26 C 1.50776 * 121.40518 * 0.55523 * 25 19 18 27 27 C 1.53001 * 117.49964 * 174.35674 * 10 9 7 28 28 C 1.52999 * 117.49997 * 105.72934 * 10 9 7 29 29 H 0.97002 * 119.99895 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00313 * 352.32070 * 9 7 2 31 31 H 1.08997 * 109.46762 * 39.78283 * 11 10 9 32 32 H 1.09001 * 109.46805 * 159.78223 * 11 10 9 33 33 H 0.96994 * 120.00601 * 5.02425 * 12 11 10 34 34 H 1.09000 * 109.68598 * 295.30459 * 17 15 13 35 35 H 1.09005 * 109.68886 * 55.86334 * 17 15 13 36 36 H 1.07997 * 119.87288 * 359.57084 * 20 19 18 37 37 H 1.07992 * 120.03623 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.85117 * 179.97438 * 24 22 21 39 39 H 1.08999 * 109.43483 * 222.09960 * 26 25 19 40 40 H 1.08999 * 109.43079 * 102.23832 * 26 25 19 41 41 H 1.08993 * 117.49888 * 145.02494 * 27 10 9 42 42 H 1.08997 * 117.49725 * 359.97438 * 27 10 9 43 43 H 1.09002 * 117.49472 * 0.02562 * 28 10 9 44 44 H 1.08998 * 117.52180 * 214.97213 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0481 -3.6511 -0.1708 11 6 3.1829 -3.6294 -1.1969 12 7 2.6251 -3.7657 -2.5446 13 6 3.4479 -3.8743 -3.6065 14 8 4.6500 -3.8587 -3.4465 15 6 2.8743 -4.0139 -4.9932 16 1 2.2611 -3.1435 -5.2263 17 6 2.0193 -5.2851 -5.0733 18 8 1.4085 -5.3363 -6.3632 19 6 2.2014 -5.1432 -7.4499 20 6 1.7249 -5.5359 -8.6967 21 6 2.4956 -5.3493 -9.8257 22 6 3.7483 -4.7686 -9.7189 23 9 4.5039 -4.5829 -10.8233 24 6 4.2247 -4.3785 -8.4806 25 6 3.4545 -4.5663 -7.3447 26 6 4.0104 -4.1326 -6.0119 27 6 1.2477 -4.9474 -0.0300 28 6 2.2312 -4.5326 1.0663 29 1 -0.4850 0.8401 0.0004 30 1 0.3621 -2.3919 0.1121 31 1 3.7233 -2.6858 -1.1209 32 1 3.8658 -4.4561 -1.0009 33 1 1.6638 -3.7778 -2.6728 34 1 2.6511 -6.1620 -4.9319 35 1 1.2491 -5.2588 -4.3025 36 1 0.7481 -5.9888 -8.7810 37 1 2.1222 -5.6550 -10.7917 38 1 5.2020 -3.9261 -8.3987 39 1 4.5019 -3.1658 -6.1213 40 1 4.7343 -4.8694 -5.6639 41 1 1.5296 -5.7848 -0.6683 42 1 0.1837 -4.8606 0.1897 43 1 1.8136 -4.1729 2.0067 44 1 3.1597 -5.0973 1.1495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323489869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:30 Heat of formation + Delta-G solvation = -60.682963 kcal Electronic energy + Delta-G solvation = -28192.312194 eV Core-core repulsion = 24025.192655 eV Total energy + Delta-G solvation = -4167.119539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.05712 -41.18704 -39.47276 -37.70265 -37.46914 -34.42398 -33.89274 -33.16206 -31.18887 -30.19864 -29.82569 -26.99519 -25.90089 -24.33734 -23.97679 -23.09990 -21.98097 -21.09271 -19.85779 -19.14751 -18.22948 -17.78134 -17.39893 -17.17230 -16.73801 -15.91780 -15.82223 -15.40268 -15.33373 -15.11239 -14.61048 -14.54442 -14.23921 -13.89794 -13.73792 -13.64751 -13.47838 -13.30492 -13.13139 -12.98004 -12.68980 -12.17305 -11.98981 -11.53452 -11.37659 -11.10320 -11.07672 -11.04477 -10.99018 -10.89193 -10.47315 -10.32533 -9.87316 -9.74773 -9.59044 -9.25941 -8.86367 -8.69801 -8.35128 -7.08715 -5.94028 -3.24461 0.82736 0.90726 2.68201 2.89389 3.19937 3.32004 3.35677 3.42034 3.42737 3.98237 4.24918 4.31264 4.33999 4.41339 4.52586 4.54037 4.72289 4.81843 4.96296 5.02686 5.14129 5.19714 5.23200 5.25085 5.35178 5.38682 5.53384 5.53955 5.67802 5.72892 5.79769 5.82245 5.86304 6.01558 6.04158 6.14089 6.37070 6.39829 6.48062 6.53297 6.66852 6.73286 7.06096 7.60122 7.72640 8.24172 8.35929 9.35648 9.87578 10.23037 11.27395 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.002685 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.426850 B =10425.250124 C =11251.897182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.005 4.005 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.074 0.926 9 N -0.684 5.684 10 C 0.140 3.860 11 C 0.153 3.847 12 N -0.705 5.705 13 C 0.520 3.480 14 O -0.543 6.543 15 C -0.148 4.148 16 H 0.115 0.885 17 C 0.073 3.927 18 O -0.306 6.306 19 C 0.121 3.879 20 C -0.118 4.118 21 C -0.123 4.123 22 C 0.065 3.935 23 F -0.142 7.142 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.061 4.061 27 C -0.196 4.196 28 C -0.208 4.208 29 H 0.258 0.742 30 H 0.389 0.611 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.403 0.597 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 -13.813 -15.314 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.737 3.263 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.092 0.908 9 N -0.321 5.321 10 C 0.045 3.955 11 C 0.029 3.971 12 N -0.355 5.355 13 C 0.304 3.696 14 O -0.421 6.421 15 C -0.170 4.170 16 H 0.133 0.867 17 C -0.002 4.002 18 O -0.219 6.219 19 C 0.075 3.925 20 C -0.137 4.137 21 C -0.142 4.142 22 C 0.046 3.954 23 F -0.121 7.121 24 C -0.136 4.136 25 C -0.126 4.126 26 C -0.098 4.098 27 C -0.235 4.235 28 C -0.250 4.250 29 H 0.067 0.933 30 H 0.224 0.776 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.238 0.762 34 H 0.092 0.908 35 H 0.135 0.865 36 H 0.159 0.841 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.110 0.890 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.980 -13.607 -15.224 20.803 hybrid contribution -0.113 1.131 0.008 1.136 sum 3.867 -12.476 -15.216 20.053 Atomic orbital electron populations 1.69661 1.05172 1.26068 1.56562 1.24792 0.95505 0.97861 1.02051 0.86196 0.78844 0.83531 0.77684 1.21521 1.21641 1.20503 1.19153 0.91186 0.83448 1.43834 0.90840 1.41881 1.06526 0.98999 1.84719 1.20143 0.95075 0.84962 0.95291 1.21082 0.94600 1.02140 0.79307 1.45913 1.10289 1.72562 1.06702 1.19995 0.86968 0.76987 0.85636 1.90694 1.14731 1.50702 1.86002 1.22019 0.99337 1.01335 0.94314 0.86676 1.22989 0.97825 0.96411 0.83018 1.86054 1.35812 1.86947 1.13091 1.18743 0.90053 0.96037 0.87620 1.20434 1.01454 1.02551 0.89253 1.20907 0.93037 1.00613 0.99640 1.17492 0.91044 1.04021 0.82882 1.91492 1.75523 1.93584 1.51463 1.20879 1.01044 1.01409 0.90221 1.19726 0.94563 1.02081 0.96190 1.20336 0.96720 1.03990 0.88728 1.23131 0.97813 0.98763 1.03788 1.23565 0.99957 1.06017 0.95457 0.93261 0.77622 0.90076 0.91820 0.76203 0.90831 0.86489 0.84050 0.84145 0.84305 0.88838 0.88668 0.89514 0.89183 0.88995 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.46 13.07 55.49 0.73 -25.74 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.25 -6.34 9.31 -15.05 -0.14 -6.48 16 8 H 0.07 1.89 6.66 -52.49 -0.35 1.54 16 9 N -0.68 -15.59 5.60 -47.23 -0.26 -15.85 16 10 C 0.14 2.51 2.43 -131.82 -0.32 2.19 16 11 C 0.15 2.62 5.51 -4.04 -0.02 2.60 16 12 N -0.71 -10.43 5.40 -60.29 -0.33 -10.76 16 13 C 0.52 7.54 7.16 -10.98 -0.08 7.46 16 14 O -0.54 -9.66 15.79 5.56 0.09 -9.57 16 15 C -0.15 -1.68 2.76 -91.53 -0.25 -1.94 16 16 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 17 C 0.07 0.70 6.26 37.36 0.23 0.94 16 18 O -0.31 -3.29 10.27 -19.42 -0.20 -3.49 16 19 C 0.12 1.29 6.47 -39.21 -0.25 1.03 16 20 C -0.12 -1.08 9.93 -39.35 -0.39 -1.47 16 21 C -0.12 -1.07 10.02 -39.59 -0.40 -1.47 16 22 C 0.06 0.66 7.30 -39.47 -0.29 0.37 16 23 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 24 C -0.12 -1.18 9.64 -39.46 -0.38 -1.56 16 25 C -0.12 -1.32 5.75 -104.44 -0.60 -1.92 16 26 C -0.06 -0.67 4.66 -27.81 -0.13 -0.80 16 27 C -0.20 -2.90 10.11 -26.73 -0.27 -3.17 16 28 C -0.21 -3.36 10.10 -26.73 -0.27 -3.63 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.39 9.49 8.00 -40.82 -0.33 9.16 16 31 H 0.08 1.63 6.48 -51.93 -0.34 1.30 16 32 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 33 H 0.40 5.49 7.91 -40.82 -0.32 5.16 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.12 0.95 7.53 -51.93 -0.39 0.56 16 36 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.10 1.08 7.70 -51.93 -0.40 0.68 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 44 H 0.08 1.18 8.08 -51.93 -0.42 0.76 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -30.12 372.82 -8.90 -39.01 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -5.90 Total: 13.67 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -3.66 Total: -8.07 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: 0.14 Total: -52.35 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -0.11 Total: -13.06 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.12 -8.90 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323489869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.669 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds