Wall clock time and date at job start Tue Mar 31 2020 18:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00272 * 2 1 4 4 H 1.48498 * 109.47140 * 270.00666 * 3 2 1 5 5 H 1.48502 * 109.46783 * 29.99769 * 3 2 1 6 6 H 1.48491 * 109.47417 * 150.00177 * 3 2 1 7 7 C 1.38821 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99993 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99629 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99848 * 172.31493 * 9 7 2 11 11 C 1.53009 * 115.56062 * 320.04414 * 10 9 7 12 12 N 1.46494 * 109.46726 * 279.77872 * 11 10 9 13 13 C 1.34777 * 119.99550 * 185.02540 * 12 11 10 14 14 O 1.21277 * 120.00482 * 359.97438 * 13 12 11 15 15 C 1.50708 * 120.00220 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.69168 * 59.99556 * 15 13 12 17 17 C 1.53400 * 109.69434 * 299.44542 * 15 13 12 18 18 O 1.42814 * 108.37834 * 175.63044 * 17 15 13 19 19 C 1.35897 * 117.87817 * 49.15650 * 18 17 15 20 20 C 1.39136 * 118.46216 * 163.00193 * 19 18 17 21 21 C 1.37968 * 120.24885 * 179.59129 * 20 19 18 22 22 C 1.38485 * 119.92907 * 359.97438 * 21 20 19 23 23 F 1.35101 * 120.03335 * 180.10986 * 22 21 20 24 24 C 1.38289 * 119.92972 * 0.08239 * 22 21 20 25 25 C 1.38351 * 121.79778 * 342.72668 * 19 18 17 26 26 C 1.50776 * 121.40518 * 0.55523 * 25 19 18 27 27 C 1.53001 * 117.49964 * 174.35674 * 10 9 7 28 28 C 1.52999 * 117.49997 * 105.72934 * 10 9 7 29 29 H 0.97002 * 119.99895 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00313 * 352.32070 * 9 7 2 31 31 H 1.08997 * 109.46762 * 39.78283 * 11 10 9 32 32 H 1.09001 * 109.46805 * 159.78223 * 11 10 9 33 33 H 0.96994 * 120.00601 * 5.02425 * 12 11 10 34 34 H 1.09000 * 109.68598 * 295.30459 * 17 15 13 35 35 H 1.09005 * 109.68886 * 55.86334 * 17 15 13 36 36 H 1.07997 * 119.87288 * 359.57084 * 20 19 18 37 37 H 1.07992 * 120.03623 * 180.02562 * 21 20 19 38 38 H 1.08004 * 119.85117 * 179.97438 * 24 22 21 39 39 H 1.08999 * 109.43483 * 222.09960 * 26 25 19 40 40 H 1.08999 * 109.43079 * 102.23832 * 26 25 19 41 41 H 1.08993 * 117.49888 * 145.02494 * 27 10 9 42 42 H 1.08997 * 117.49725 * 359.97438 * 27 10 9 43 43 H 1.09002 * 117.49472 * 0.02562 * 28 10 9 44 44 H 1.08998 * 117.52180 * 214.97213 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0481 -3.6511 -0.1708 11 6 3.1829 -3.6294 -1.1969 12 7 2.6251 -3.7657 -2.5446 13 6 3.4479 -3.8743 -3.6065 14 8 4.6500 -3.8587 -3.4465 15 6 2.8743 -4.0139 -4.9932 16 1 2.2611 -3.1435 -5.2263 17 6 2.0193 -5.2851 -5.0733 18 8 1.4085 -5.3363 -6.3632 19 6 2.2014 -5.1432 -7.4499 20 6 1.7249 -5.5359 -8.6967 21 6 2.4956 -5.3493 -9.8257 22 6 3.7483 -4.7686 -9.7189 23 9 4.5039 -4.5829 -10.8233 24 6 4.2247 -4.3785 -8.4806 25 6 3.4545 -4.5663 -7.3447 26 6 4.0104 -4.1326 -6.0119 27 6 1.2477 -4.9474 -0.0300 28 6 2.2312 -4.5326 1.0663 29 1 -0.4850 0.8401 0.0004 30 1 0.3621 -2.3919 0.1121 31 1 3.7233 -2.6858 -1.1209 32 1 3.8658 -4.4561 -1.0009 33 1 1.6638 -3.7778 -2.6728 34 1 2.6511 -6.1620 -4.9319 35 1 1.2491 -5.2588 -4.3025 36 1 0.7481 -5.9888 -8.7810 37 1 2.1222 -5.6550 -10.7917 38 1 5.2020 -3.9261 -8.3987 39 1 4.5019 -3.1658 -6.1213 40 1 4.7343 -4.8694 -5.6639 41 1 1.5296 -5.7848 -0.6683 42 1 0.1837 -4.8606 0.1897 43 1 1.8136 -4.1729 2.0067 44 1 3.1597 -5.0973 1.1495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323489869.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:29 Heat of formation + Delta-G solvation = -79.205187 kcal Electronic energy + Delta-G solvation = -28193.115378 eV Core-core repulsion = 24025.192655 eV Total energy + Delta-G solvation = -4167.922723 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.85126 -42.04967 -40.62225 -39.02791 -38.31205 -35.32535 -35.31284 -34.89078 -32.01860 -31.67791 -30.95477 -28.21628 -26.72979 -25.94779 -25.26876 -23.84798 -23.22784 -22.07004 -21.03625 -20.45009 -19.24568 -18.99959 -18.69426 -18.09959 -17.74214 -17.26520 -16.69632 -16.56342 -16.40744 -16.07424 -15.94405 -15.68172 -15.40637 -15.24087 -14.87073 -14.68966 -14.47179 -14.26767 -14.22400 -13.94848 -13.61983 -13.55807 -13.51612 -12.95058 -12.88030 -12.37078 -12.28533 -12.19938 -12.17085 -11.99791 -11.87058 -11.79268 -11.72822 -11.04747 -11.02269 -10.60749 -10.04660 -9.97958 -9.12862 -8.92522 -7.98864 -5.26346 0.09454 0.14569 1.44169 1.46006 1.52231 1.53096 2.01592 2.21256 2.50724 2.51462 3.08641 3.20684 3.38533 3.44108 3.49513 3.58207 3.66215 3.74279 3.82065 3.87312 4.07402 4.09087 4.15627 4.29688 4.36156 4.40460 4.45792 4.58086 4.77697 4.81879 4.83369 4.86021 4.95794 4.97262 5.04941 5.08674 5.13257 5.16652 5.24383 5.38951 5.46448 5.54905 5.66616 6.24561 6.28761 6.54263 7.17912 7.31280 8.03653 8.27256 9.23367 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.014156 B = 0.002685 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.426850 B =10425.250124 C =11251.897182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.064 4.064 3 Si 0.959 3.041 4 H -0.291 1.291 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.696 5.696 10 C 0.110 3.890 11 C 0.163 3.837 12 N -0.700 5.700 13 C 0.522 3.478 14 O -0.577 6.577 15 C -0.140 4.140 16 H 0.116 0.884 17 C 0.076 3.924 18 O -0.310 6.310 19 C 0.107 3.893 20 C -0.117 4.117 21 C -0.115 4.115 22 C 0.051 3.949 23 F -0.148 7.148 24 C -0.123 4.123 25 C -0.133 4.133 26 C -0.057 4.057 27 C -0.162 4.162 28 C -0.203 4.203 29 H 0.251 0.749 30 H 0.378 0.622 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.411 0.589 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.145 0.855 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -15.743 -16.272 22.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.257 4.257 3 Si 0.789 3.211 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.199 1.199 7 C -0.362 4.362 8 H 0.088 0.912 9 N -0.333 5.333 10 C 0.018 3.982 11 C 0.038 3.962 12 N -0.350 5.350 13 C 0.309 3.691 14 O -0.458 6.458 15 C -0.161 4.161 16 H 0.134 0.866 17 C 0.000 4.000 18 O -0.223 6.223 19 C 0.062 3.938 20 C -0.136 4.136 21 C -0.134 4.134 22 C 0.032 3.968 23 F -0.127 7.127 24 C -0.142 4.142 25 C -0.134 4.134 26 C -0.094 4.094 27 C -0.200 4.200 28 C -0.244 4.244 29 H 0.060 0.940 30 H 0.212 0.788 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.247 0.753 34 H 0.100 0.900 35 H 0.152 0.848 36 H 0.180 0.820 37 H 0.184 0.816 38 H 0.163 0.837 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.776 -15.585 -16.185 22.784 hybrid contribution 0.019 1.619 0.301 1.647 sum 3.794 -13.966 -15.884 21.488 Atomic orbital electron populations 1.69776 1.06215 1.26008 1.59123 1.25395 0.96193 1.00451 1.03630 0.85358 0.77917 0.80556 0.77276 1.21792 1.22146 1.19874 1.19366 0.91157 0.84711 1.41000 0.91166 1.41909 1.06098 0.99964 1.85324 1.20367 0.96564 0.84427 0.96881 1.20845 0.94269 1.00830 0.80269 1.45867 1.10703 1.72379 1.06086 1.20463 0.86418 0.75743 0.86517 1.90680 1.16295 1.52174 1.86615 1.21947 0.99569 1.02548 0.92048 0.86629 1.23079 0.98191 0.95483 0.83199 1.86051 1.35985 1.86995 1.13304 1.18992 0.90110 0.96479 0.88240 1.20712 1.02260 1.01985 0.88602 1.21199 0.92173 0.99285 1.00737 1.17695 0.91725 1.04708 0.82662 1.91477 1.75799 1.93715 1.51677 1.20993 1.01429 1.01483 0.90303 1.19669 0.94966 1.02921 0.95875 1.20255 0.96499 1.03526 0.89115 1.23205 0.97505 0.96993 1.02334 1.23554 1.01477 1.05024 0.94359 0.93975 0.78828 0.93720 0.90302 0.75341 0.89957 0.84752 0.81964 0.81622 0.83703 0.89536 0.89218 0.86299 0.89070 0.90406 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.82 13.07 21.65 0.28 -55.53 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 3 Si 0.96 45.24 29.55 68.60 2.03 47.27 16 4 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.23 -12.01 9.31 84.03 0.78 -11.22 16 8 H 0.07 3.65 6.66 -2.91 -0.02 3.63 16 9 N -0.70 -31.67 5.60 -303.33 -1.70 -33.37 16 10 C 0.11 3.80 2.43 3.61 0.01 3.81 16 11 C 0.16 5.41 5.51 86.38 0.48 5.89 16 12 N -0.70 -19.86 5.40 -463.05 -2.50 -22.36 16 13 C 0.52 14.74 7.16 87.66 0.63 15.36 16 14 O -0.58 -20.41 15.79 -3.02 -0.05 -20.46 16 15 C -0.14 -3.02 2.76 -11.38 -0.03 -3.05 16 16 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 17 C 0.08 1.30 6.26 72.12 0.45 1.75 16 18 O -0.31 -6.01 10.27 -92.39 -0.95 -6.95 16 19 C 0.11 2.09 6.47 22.51 0.15 2.24 16 20 C -0.12 -1.85 9.93 22.42 0.22 -1.63 16 21 C -0.12 -1.75 10.02 22.26 0.22 -1.52 16 22 C 0.05 0.97 7.30 22.34 0.16 1.13 16 23 F -0.15 -3.03 17.27 44.97 0.78 -2.25 16 24 C -0.12 -2.40 9.64 22.35 0.22 -2.18 16 25 C -0.13 -2.70 5.75 -19.75 -0.11 -2.82 16 26 C -0.06 -1.22 4.66 29.89 0.14 -1.08 16 27 C -0.16 -4.28 10.11 30.60 0.31 -3.97 16 28 C -0.20 -6.09 10.10 30.60 0.31 -5.78 16 29 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.38 18.57 8.00 -92.71 -0.74 17.83 16 31 H 0.04 1.81 6.48 -2.39 -0.02 1.80 16 32 H 0.08 2.38 7.94 -2.39 -0.02 2.36 16 33 H 0.41 10.48 7.91 -92.71 -0.73 9.75 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.13 1.81 7.53 -2.38 -0.02 1.79 16 36 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.09 2.02 7.70 -2.39 -0.02 2.00 16 41 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 42 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.10 2.68 8.08 -2.39 -0.02 2.66 16 Total: -1.00 -65.31 372.82 1.87 -63.45 By element: Atomic # 1 Polarization: 36.73 SS G_CDS: -0.42 Total: 36.31 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.40 Total: -6.10 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -3.92 Total: -111.27 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -1.00 Total: -27.42 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.31 1.87 -63.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323489869.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.758 kcal (2) G-P(sol) polarization free energy of solvation -65.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds