Wall clock time and date at job start Tue Mar 31 2020 17:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42102 * 108.58216 * 2 1 4 4 O 1.42098 * 108.58090 * 228.96876 * 2 1 3 5 5 C 1.81404 * 101.91812 * 114.48452 * 2 1 3 6 6 C 1.53004 * 109.47009 * 180.02562 * 5 2 1 7 7 C 1.50704 * 109.47125 * 180.02562 * 6 5 2 8 8 O 1.21273 * 119.99838 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99754 * 180.02562 * 7 6 5 10 10 C 1.46510 * 119.99698 * 185.06638 * 9 7 6 11 11 C 1.52999 * 109.49676 * 57.00001 * 10 9 7 12 12 O 1.42899 * 109.47062 * 54.78384 * 11 10 9 13 13 C 1.53041 * 109.49446 * 296.93802 * 10 9 7 14 14 C 1.53047 * 109.53750 * 301.38091 * 13 10 9 15 15 C 1.53191 * 109.31004 * 298.63625 * 14 13 10 16 16 N 1.46929 * 108.77963 * 54.63763 * 15 14 13 17 17 C 1.36934 * 120.63473 * 126.36496 * 16 15 14 18 18 H 1.08008 * 119.99858 * 329.46608 * 17 16 15 19 19 C 1.38807 * 120.00410 * 149.46858 * 17 16 15 20 20 N 1.31627 * 119.99616 * 348.46922 * 19 17 16 21 21 Si 1.86792 * 120.00482 * 168.46920 * 19 17 16 22 22 H 1.48504 * 109.47206 * 89.99849 * 21 19 17 23 23 H 1.48497 * 109.47387 * 209.99724 * 21 19 17 24 24 H 1.48503 * 109.47144 * 329.99986 * 21 19 17 25 25 C 1.46930 * 118.73614 * 306.39099 * 16 15 14 26 26 H 1.09000 * 109.47436 * 305.51977 * 1 2 3 27 27 H 1.09008 * 109.46918 * 65.51853 * 1 2 3 28 28 H 1.08993 * 109.47235 * 185.51211 * 1 2 3 29 29 H 1.08996 * 109.47356 * 59.99777 * 5 2 1 30 30 H 1.08999 * 109.47240 * 299.99642 * 5 2 1 31 31 H 1.08996 * 109.47403 * 59.99610 * 6 5 2 32 32 H 1.09000 * 109.47171 * 299.99661 * 6 5 2 33 33 H 0.97000 * 120.00698 * 5.06165 * 9 7 6 34 34 H 1.08994 * 109.47336 * 294.78144 * 11 10 9 35 35 H 1.09006 * 109.46773 * 174.77685 * 11 10 9 36 36 H 0.96701 * 113.99756 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.46132 * 61.40179 * 13 10 9 38 38 H 1.09004 * 109.45801 * 181.36319 * 13 10 9 39 39 H 1.08999 * 109.49675 * 58.58468 * 14 13 10 40 40 H 1.08993 * 109.49776 * 178.68839 * 14 13 10 41 41 H 1.09006 * 109.58356 * 174.42056 * 15 14 13 42 42 H 1.08997 * 109.59223 * 294.70518 * 15 14 13 43 43 H 0.97000 * 119.99475 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58357 * 293.81920 * 25 16 15 45 45 H 1.08996 * 109.58751 * 173.39191 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0160 5 6 2.1886 -0.7356 1.6153 6 6 3.7053 -0.8184 1.7986 7 6 4.0166 -1.4301 3.1403 8 8 3.1142 -1.7662 3.8774 9 7 5.2978 -1.6025 3.5213 10 6 5.6020 -2.2972 4.7748 11 6 4.9742 -3.6923 4.7509 12 8 5.4144 -4.3928 3.5857 13 6 5.0325 -1.5009 5.9512 14 6 5.6353 -0.0942 5.9566 15 6 7.1540 -0.1944 6.1305 16 7 7.6923 -1.0775 5.0869 17 6 8.7075 -0.6551 4.2707 18 1 8.7995 0.3917 4.0211 19 6 9.6181 -1.5720 3.7642 20 7 9.6501 -2.7990 4.2396 21 14 10.7983 -1.0649 2.4080 22 1 12.0466 -0.5330 3.0114 23 1 11.1195 -2.2441 1.5647 24 1 10.1669 -0.0141 1.5698 25 6 7.1203 -2.4224 4.9353 26 1 -0.3634 0.5970 0.8364 27 1 -0.3633 0.4259 -0.9353 28 1 -0.3633 -1.0228 0.0987 29 1 1.7609 -1.7368 1.6666 30 1 1.7609 -0.1170 2.4043 31 1 4.1327 0.1830 1.7474 32 1 4.1334 -1.4368 1.0097 33 1 6.0185 -1.2669 2.9656 34 1 3.8882 -3.6018 4.7318 35 1 5.2775 -4.2424 5.6417 36 1 5.0552 -5.2870 3.5053 37 1 3.9493 -1.4315 5.8522 38 1 5.2801 -2.0057 6.8851 39 1 5.4092 0.4021 5.0129 40 1 5.2119 0.4798 6.7807 41 1 7.5988 0.7962 6.0361 42 1 7.3829 -0.6055 7.1137 43 1 10.2867 -3.4397 3.8859 44 1 7.3464 -3.0174 5.8201 45 1 7.5428 -2.9017 4.0523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325848747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:21 Heat of formation + Delta-G solvation = -132.564052 kcal Electronic energy + Delta-G solvation = -28756.547783 eV Core-core repulsion = 24709.382409 eV Total energy + Delta-G solvation = -4047.165375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.03752 -37.59494 -37.16489 -36.21755 -35.91710 -33.75753 -33.21230 -32.47511 -30.29064 -29.93280 -29.70683 -25.46585 -25.10108 -25.06262 -22.24263 -20.95194 -20.01125 -19.08211 -18.66554 -17.48893 -16.89157 -16.78368 -16.49598 -16.21974 -16.02477 -15.40511 -15.16337 -14.68462 -14.16539 -14.02814 -13.88850 -13.59417 -13.51656 -13.31815 -13.13587 -13.01820 -12.59622 -12.45981 -12.31577 -12.26094 -12.17260 -11.93029 -11.53665 -11.46310 -11.29795 -11.16796 -10.94623 -10.79832 -10.74095 -10.48181 -10.22586 -9.99165 -9.86796 -9.64077 -9.60697 -9.00485 -8.54577 -8.40471 -6.68777 -5.83185 -3.31403 -0.26347 2.50038 2.99364 3.30919 3.35645 3.43571 3.44259 3.74998 3.78146 4.36686 4.44878 4.47688 4.49483 4.65007 4.77799 5.01389 5.28733 5.31003 5.37488 5.41711 5.46544 5.59443 5.65578 5.69928 5.78405 5.80788 5.93450 6.09227 6.27938 6.36850 6.47929 6.49930 6.63481 6.80561 6.96052 7.05163 7.29488 7.63994 7.75734 8.03493 8.14350 8.42172 8.68316 9.16044 9.77822 10.35850 11.24310 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012288 B = 0.003844 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.119792 B = 7282.970220 C = 8160.338145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 2.420 3.580 3 O -0.939 6.939 4 O -0.939 6.939 5 C -0.587 4.587 6 C -0.137 4.137 7 C 0.522 3.478 8 O -0.558 6.558 9 N -0.683 5.683 10 C 0.155 3.845 11 C 0.069 3.931 12 O -0.559 6.559 13 C -0.120 4.120 14 C -0.128 4.128 15 C 0.142 3.858 16 N -0.591 5.591 17 C -0.261 4.261 18 H 0.066 0.934 19 C 0.008 3.992 20 N -0.899 5.899 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.175 3.825 26 H 0.128 0.872 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.410 0.590 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.367 0.633 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.017 0.983 43 H 0.255 0.745 44 H 0.030 0.970 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.749 1.456 -3.387 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.602 3.398 3 O -0.936 6.936 4 O -0.936 6.936 5 C -0.716 4.716 6 C -0.178 4.178 7 C 0.307 3.693 8 O -0.438 6.438 9 N -0.332 5.332 10 C 0.067 3.933 11 C -0.010 4.010 12 O -0.363 6.363 13 C -0.159 4.159 14 C -0.168 4.168 15 C 0.016 3.984 16 N -0.313 5.313 17 C -0.390 4.390 18 H 0.084 0.916 19 C -0.191 4.191 20 N -0.543 5.543 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.203 1.203 25 C 0.048 3.952 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.156 0.844 30 H 0.156 0.844 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.246 0.754 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.212 0.788 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.315 1.949 -3.679 17.809 hybrid contribution 0.055 -0.533 -0.078 0.542 sum -17.261 1.416 -3.757 17.721 Atomic orbital electron populations 1.30262 1.27031 1.11598 1.11655 1.07864 0.78279 0.75864 0.77786 1.93610 1.78899 1.34540 1.86567 1.93609 1.78897 1.66963 1.54153 1.30065 1.04419 1.14787 1.22363 1.21367 0.92798 1.04621 0.99033 1.20024 0.83336 0.78687 0.87282 1.90559 1.46065 1.52586 1.54575 1.45839 1.06833 1.56720 1.23814 1.21269 1.00385 0.88348 0.83281 1.22569 0.98380 0.92648 0.87426 1.86577 1.74092 1.30761 1.44844 1.21751 1.00708 0.96457 0.96940 1.21922 0.98445 0.95774 1.00609 1.20975 0.90986 0.94837 0.91628 1.44024 1.39134 1.12499 1.35663 1.19158 1.03696 0.93638 1.22516 0.91648 1.25153 0.97178 0.96646 1.00169 1.69957 1.37519 1.04320 1.42487 0.86300 0.81161 0.77566 0.81734 1.21395 1.21532 1.20334 1.21050 0.84468 0.87183 1.02482 0.85301 0.85378 0.85314 0.84406 0.84390 0.87479 0.87334 0.75373 0.92413 0.93749 0.78754 0.91099 0.92170 0.92459 0.93184 0.92855 0.96517 0.93459 0.95189 0.87601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -3.08 10.62 101.05 1.07 -2.01 16 2 S 2.42 20.61 5.36 -107.50 -0.58 20.04 16 3 O -0.94 -11.56 18.10 -57.83 -1.05 -12.61 16 4 O -0.94 -11.59 18.10 -57.83 -1.05 -12.63 16 5 C -0.59 -5.27 5.09 37.16 0.19 -5.08 16 6 C -0.14 -1.69 5.71 -27.88 -0.16 -1.85 16 7 C 0.52 8.30 7.24 -10.99 -0.08 8.22 16 8 O -0.56 -9.61 12.30 5.56 0.07 -9.54 16 9 N -0.68 -12.11 3.95 -47.49 -0.19 -12.29 16 10 C 0.16 2.90 0.45 -131.69 -0.06 2.84 16 11 C 0.07 1.17 5.59 37.16 0.21 1.38 16 12 O -0.56 -9.54 13.08 -35.23 -0.46 -10.00 16 13 C -0.12 -2.11 4.52 -26.69 -0.12 -2.23 16 14 C -0.13 -2.25 5.93 -26.61 -0.16 -2.41 16 15 C 0.14 2.89 6.52 -3.71 -0.02 2.87 16 16 N -0.59 -13.93 2.85 -172.32 -0.49 -14.42 16 17 C -0.26 -6.75 9.59 -15.06 -0.14 -6.89 16 18 H 0.07 1.67 7.86 -52.48 -0.41 1.26 16 19 C 0.01 0.21 5.03 -17.43 -0.09 0.12 16 20 N -0.90 -25.14 11.04 55.49 0.61 -24.53 16 21 Si 0.90 21.06 29.57 -169.99 -5.03 16.03 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 C 0.17 3.96 3.82 -3.71 -0.01 3.95 16 26 H 0.13 0.40 8.14 -51.92 -0.42 -0.02 16 27 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.14 1.08 8.10 -51.93 -0.42 0.66 16 30 H 0.14 1.08 8.10 -51.92 -0.42 0.66 16 31 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.41 7.65 8.43 -40.82 -0.34 7.31 16 34 H 0.06 0.98 6.30 -51.93 -0.33 0.65 16 35 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.37 4.45 9.12 45.56 0.42 4.86 16 37 H 0.07 1.25 6.26 -51.93 -0.33 0.92 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.11 2.75 5.91 -51.93 -0.31 2.44 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -36.09 371.04 -8.25 -44.33 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -6.31 Total: 11.11 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 0.62 Total: -1.08 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.07 Total: -51.24 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -2.49 Total: -44.78 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 20.61 SS G_CDS: -0.58 Total: 20.04 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.09 -8.25 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325848747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.231 kcal (2) G-P(sol) polarization free energy of solvation -36.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds