Wall clock time and date at job start Tue Mar 31 2020 17:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42102 * 108.58216 * 2 1 4 4 O 1.42098 * 108.58090 * 228.96876 * 2 1 3 5 5 C 1.81404 * 101.91812 * 114.48452 * 2 1 3 6 6 C 1.53004 * 109.47009 * 180.02562 * 5 2 1 7 7 C 1.50704 * 109.47125 * 180.02562 * 6 5 2 8 8 O 1.21273 * 119.99838 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99754 * 180.02562 * 7 6 5 10 10 C 1.46510 * 119.99698 * 185.06638 * 9 7 6 11 11 C 1.52999 * 109.49676 * 57.00001 * 10 9 7 12 12 O 1.42899 * 109.47062 * 54.78384 * 11 10 9 13 13 C 1.53041 * 109.49446 * 296.93802 * 10 9 7 14 14 C 1.53047 * 109.53750 * 301.38091 * 13 10 9 15 15 C 1.53191 * 109.31004 * 298.63625 * 14 13 10 16 16 N 1.46929 * 108.77963 * 54.63763 * 15 14 13 17 17 C 1.36934 * 120.63473 * 126.36496 * 16 15 14 18 18 H 1.08008 * 119.99858 * 329.46608 * 17 16 15 19 19 C 1.38807 * 120.00410 * 149.46858 * 17 16 15 20 20 N 1.31627 * 119.99616 * 348.46922 * 19 17 16 21 21 Si 1.86792 * 120.00482 * 168.46920 * 19 17 16 22 22 H 1.48504 * 109.47206 * 89.99849 * 21 19 17 23 23 H 1.48497 * 109.47387 * 209.99724 * 21 19 17 24 24 H 1.48503 * 109.47144 * 329.99986 * 21 19 17 25 25 C 1.46930 * 118.73614 * 306.39099 * 16 15 14 26 26 H 1.09000 * 109.47436 * 305.51977 * 1 2 3 27 27 H 1.09008 * 109.46918 * 65.51853 * 1 2 3 28 28 H 1.08993 * 109.47235 * 185.51211 * 1 2 3 29 29 H 1.08996 * 109.47356 * 59.99777 * 5 2 1 30 30 H 1.08999 * 109.47240 * 299.99642 * 5 2 1 31 31 H 1.08996 * 109.47403 * 59.99610 * 6 5 2 32 32 H 1.09000 * 109.47171 * 299.99661 * 6 5 2 33 33 H 0.97000 * 120.00698 * 5.06165 * 9 7 6 34 34 H 1.08994 * 109.47336 * 294.78144 * 11 10 9 35 35 H 1.09006 * 109.46773 * 174.77685 * 11 10 9 36 36 H 0.96701 * 113.99756 * 179.97438 * 12 11 10 37 37 H 1.08997 * 109.46132 * 61.40179 * 13 10 9 38 38 H 1.09004 * 109.45801 * 181.36319 * 13 10 9 39 39 H 1.08999 * 109.49675 * 58.58468 * 14 13 10 40 40 H 1.08993 * 109.49776 * 178.68839 * 14 13 10 41 41 H 1.09006 * 109.58356 * 174.42056 * 15 14 13 42 42 H 1.08997 * 109.59223 * 294.70518 * 15 14 13 43 43 H 0.97000 * 119.99475 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58357 * 293.81920 * 25 16 15 45 45 H 1.08996 * 109.58751 * 173.39191 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0160 5 6 2.1886 -0.7356 1.6153 6 6 3.7053 -0.8184 1.7986 7 6 4.0166 -1.4301 3.1403 8 8 3.1142 -1.7662 3.8774 9 7 5.2978 -1.6025 3.5213 10 6 5.6020 -2.2972 4.7748 11 6 4.9742 -3.6923 4.7509 12 8 5.4144 -4.3928 3.5857 13 6 5.0325 -1.5009 5.9512 14 6 5.6353 -0.0942 5.9566 15 6 7.1540 -0.1944 6.1305 16 7 7.6923 -1.0775 5.0869 17 6 8.7075 -0.6551 4.2707 18 1 8.7995 0.3917 4.0211 19 6 9.6181 -1.5720 3.7642 20 7 9.6501 -2.7990 4.2396 21 14 10.7983 -1.0649 2.4080 22 1 12.0466 -0.5330 3.0114 23 1 11.1195 -2.2441 1.5647 24 1 10.1669 -0.0141 1.5698 25 6 7.1203 -2.4224 4.9353 26 1 -0.3634 0.5970 0.8364 27 1 -0.3633 0.4259 -0.9353 28 1 -0.3633 -1.0228 0.0987 29 1 1.7609 -1.7368 1.6666 30 1 1.7609 -0.1170 2.4043 31 1 4.1327 0.1830 1.7474 32 1 4.1334 -1.4368 1.0097 33 1 6.0185 -1.2669 2.9656 34 1 3.8882 -3.6018 4.7318 35 1 5.2775 -4.2424 5.6417 36 1 5.0552 -5.2870 3.5053 37 1 3.9493 -1.4315 5.8522 38 1 5.2801 -2.0057 6.8851 39 1 5.4092 0.4021 5.0129 40 1 5.2119 0.4798 6.7807 41 1 7.5988 0.7962 6.0361 42 1 7.3829 -0.6055 7.1137 43 1 10.2867 -3.4397 3.8859 44 1 7.3464 -3.0174 5.8201 45 1 7.5428 -2.9017 4.0523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325848747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:21 Heat of formation + Delta-G solvation = -163.093591 kcal Electronic energy + Delta-G solvation = -28757.871644 eV Core-core repulsion = 24709.382409 eV Total energy + Delta-G solvation = -4048.489235 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.41585 -39.04211 -37.96547 -37.36628 -37.01829 -35.39661 -34.33530 -33.93923 -31.93997 -31.33571 -30.33122 -27.32679 -26.62980 -26.03618 -23.96854 -22.40739 -21.43184 -20.14479 -19.74631 -18.83024 -18.43202 -18.16830 -17.32468 -17.18720 -16.98766 -16.62153 -16.39248 -16.28278 -15.79032 -15.37597 -15.24543 -14.83995 -14.62404 -14.48227 -14.12586 -13.94744 -13.89213 -13.83446 -13.48182 -13.45827 -13.09185 -13.01657 -12.99907 -12.86614 -12.71355 -12.53856 -12.40312 -12.21203 -11.99457 -11.97229 -11.67587 -11.54904 -11.46448 -11.20269 -11.02585 -10.54413 -10.38692 -9.79000 -8.62223 -7.84663 -5.34858 -0.90703 1.48320 1.51150 1.58919 1.74495 1.89909 2.30835 2.52022 2.82387 3.16377 3.31225 3.35553 3.52027 3.67112 3.85581 3.89386 4.11172 4.15760 4.21451 4.26505 4.28838 4.37465 4.46592 4.50800 4.60992 4.65080 4.80123 4.86115 4.93053 4.95422 4.99384 5.02458 5.13009 5.21822 5.34392 5.50087 5.64530 5.77363 5.77995 6.42878 6.77376 6.93726 7.16803 7.35579 7.85723 8.39348 9.20372 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012288 B = 0.003844 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.119792 B = 7282.970220 C = 8160.338145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.632 4.632 2 S 2.430 3.570 3 O -0.984 6.984 4 O -0.985 6.985 5 C -0.585 4.585 6 C -0.145 4.145 7 C 0.522 3.478 8 O -0.568 6.568 9 N -0.691 5.691 10 C 0.157 3.843 11 C 0.075 3.925 12 O -0.579 6.579 13 C -0.114 4.114 14 C -0.117 4.117 15 C 0.139 3.861 16 N -0.604 5.604 17 C -0.262 4.262 18 H 0.067 0.933 19 C -0.041 4.041 20 N -0.930 5.930 21 Si 0.962 3.038 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.268 1.268 25 C 0.191 3.809 26 H 0.153 0.847 27 H 0.140 0.860 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.154 0.846 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.403 0.597 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.388 0.612 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.014 0.986 43 H 0.249 0.751 44 H 0.003 0.997 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.447 2.298 -3.552 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.786 4.786 2 S 2.617 3.383 3 O -0.981 6.981 4 O -0.982 6.982 5 C -0.714 4.714 6 C -0.185 4.185 7 C 0.308 3.692 8 O -0.449 6.449 9 N -0.340 5.340 10 C 0.069 3.931 11 C -0.004 4.004 12 O -0.386 6.386 13 C -0.153 4.153 14 C -0.156 4.156 15 C 0.013 3.987 16 N -0.327 5.327 17 C -0.392 4.392 18 H 0.085 0.915 19 C -0.237 4.237 20 N -0.575 5.575 21 Si 0.790 3.210 22 H -0.215 1.215 23 H -0.223 1.223 24 H -0.192 1.192 25 C 0.064 3.936 26 H 0.172 0.828 27 H 0.159 0.841 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.238 0.762 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.237 0.763 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.058 0.942 44 H 0.021 0.979 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.006 2.799 -3.838 20.562 hybrid contribution 0.809 -0.800 0.025 1.138 sum -19.197 1.999 -3.813 19.674 Atomic orbital electron populations 1.30047 1.20981 1.14001 1.13540 1.07282 0.80290 0.74066 0.76649 1.93552 1.81240 1.36384 1.86910 1.93551 1.81254 1.67658 1.55727 1.30077 1.02038 1.16118 1.23143 1.21454 0.95572 1.04703 0.96789 1.20514 0.82304 0.78112 0.88264 1.90538 1.46027 1.53073 1.55284 1.45869 1.07518 1.57157 1.23458 1.21069 0.97442 0.90005 0.84557 1.22481 0.98368 0.91833 0.87712 1.86533 1.74672 1.32461 1.44885 1.21712 1.00823 0.96202 0.96516 1.21801 0.96082 0.96208 1.01482 1.21098 0.92959 0.94097 0.90497 1.44222 1.39069 1.13042 1.36408 1.19434 1.03782 0.93695 1.22289 0.91486 1.25792 0.98892 0.96716 1.02287 1.70120 1.38326 1.05205 1.43869 0.85370 0.79226 0.77004 0.79390 1.21490 1.22302 1.19238 1.20670 0.87136 0.86250 0.99524 0.82827 0.84122 0.82878 0.82995 0.82827 0.86803 0.87035 0.76226 0.91738 0.93136 0.76343 0.90427 0.91715 0.92923 0.90368 0.92749 0.96810 0.94200 0.97920 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.35 10.62 113.37 1.20 -2.14 16 2 S 2.43 37.51 5.36 -56.49 -0.30 37.20 16 3 O -0.98 -23.48 18.10 -127.37 -2.31 -25.78 16 4 O -0.98 -23.71 18.10 -127.37 -2.30 -26.01 16 5 C -0.58 -9.21 5.09 71.98 0.37 -8.84 16 6 C -0.14 -3.40 5.71 29.85 0.17 -3.23 16 7 C 0.52 15.96 7.24 87.66 0.63 16.59 16 8 O -0.57 -18.40 12.30 -3.01 -0.04 -18.44 16 9 N -0.69 -24.32 3.95 -422.56 -1.67 -25.99 16 10 C 0.16 5.85 0.45 3.68 0.00 5.85 16 11 C 0.08 2.51 5.59 71.98 0.40 2.92 16 12 O -0.58 -19.64 13.08 -148.98 -1.95 -21.59 16 13 C -0.11 -3.84 4.52 30.62 0.14 -3.70 16 14 C -0.12 -3.90 5.93 30.67 0.18 -3.72 16 15 C 0.14 5.59 6.52 86.36 0.56 6.15 16 16 N -0.60 -28.87 2.85 -699.09 -2.00 -30.87 16 17 C -0.26 -13.72 9.59 84.03 0.81 -12.92 16 18 H 0.07 3.43 7.86 -2.91 -0.02 3.41 16 19 C -0.04 -2.20 5.03 84.86 0.43 -1.77 16 20 N -0.93 -53.63 11.04 21.65 0.24 -53.39 16 21 Si 0.96 44.04 29.57 68.60 2.03 46.07 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 C 0.19 8.87 3.82 86.36 0.33 9.20 16 26 H 0.15 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.15 0.20 8.14 -2.39 -0.02 0.18 16 29 H 0.15 1.96 8.10 -2.39 -0.02 1.94 16 30 H 0.15 1.93 8.10 -2.39 -0.02 1.91 16 31 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.40 15.27 8.43 -92.71 -0.78 14.48 16 34 H 0.06 2.08 6.30 -2.39 -0.02 2.07 16 35 H 0.05 1.60 8.14 -2.38 -0.02 1.59 16 36 H 0.39 9.11 9.12 -74.06 -0.68 8.44 16 37 H 0.08 2.55 6.26 -2.39 -0.01 2.54 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.05 1.82 7.53 -2.39 -0.02 1.80 16 40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 2.14 7.93 -2.38 -0.02 2.12 16 42 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.07 3.83 5.91 -2.39 -0.01 3.82 16 Total: -1.00 -79.13 371.04 -3.51 -82.64 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -0.44 Total: 31.77 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.23 Total: 4.38 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.42 Total: -110.24 kcal Atomic # 8 Polarization: -85.23 SS G_CDS: -6.59 Total: -91.82 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 37.51 SS G_CDS: -0.30 Total: 37.20 kcal Total: -79.13 -3.51 -82.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325848747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.453 kcal (2) G-P(sol) polarization free energy of solvation -79.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds