Wall clock time and date at job start Tue Mar 31 2020 18:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00171 * 2 1 4 4 H 1.48505 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47443 * 299.99973 * 3 2 1 6 6 H 1.48500 * 109.47103 * 59.99936 * 3 2 1 7 7 C 1.38810 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99838 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.46627 * 126.56388 * 0.02562 * 9 7 2 11 11 C 1.50785 * 107.70270 * 179.97438 * 10 9 7 12 12 C 1.38440 * 131.20608 * 179.97438 * 11 10 9 13 13 C 1.38150 * 120.09957 * 180.02562 * 12 11 10 14 14 C 1.38248 * 119.96689 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.02220 * 179.97438 * 14 13 12 16 16 N 1.46492 * 109.47589 * 89.99347 * 15 14 13 17 17 C 1.34777 * 120.00380 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99541 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00043 * 179.97438 * 17 16 15 20 20 F 1.39903 * 110.45429 * 57.39779 * 19 17 16 21 21 C 1.54508 * 110.50908 * 180.02562 * 19 17 16 22 22 C 1.54482 * 104.06206 * 118.65011 * 21 19 17 23 23 O 1.44420 * 104.80523 * 23.97880 * 22 21 19 24 24 C 1.44427 * 105.27358 * 319.48796 * 23 22 21 25 25 C 1.38143 * 119.95739 * 0.21157 * 14 13 12 26 26 C 1.38068 * 108.86009 * 0.02562 * 11 10 9 27 27 C 1.46635 * 126.55889 * 180.02562 * 9 7 2 28 28 H 0.97006 * 119.99795 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.81595 * 299.52653 * 10 9 7 30 30 H 1.09000 * 109.81411 * 60.43693 * 10 9 7 31 31 H 1.07997 * 119.94957 * 0.03519 * 12 11 10 32 32 H 1.08009 * 120.01467 * 179.97438 * 13 12 11 33 33 H 1.08995 * 109.46948 * 209.99885 * 15 14 13 34 34 H 1.09007 * 109.47012 * 329.99478 * 15 14 13 35 35 H 0.97007 * 119.99836 * 0.02562 * 16 15 14 36 36 H 1.09010 * 110.51051 * 237.29143 * 21 19 17 37 37 H 1.09001 * 110.51388 * 359.97438 * 21 19 17 38 38 H 1.08997 * 110.37122 * 142.81142 * 22 21 19 39 39 H 1.09005 * 110.36773 * 265.14400 * 22 21 19 40 40 H 1.09002 * 110.37821 * 281.68501 * 24 23 22 41 41 H 1.08998 * 110.37625 * 159.34217 * 24 23 22 42 42 H 1.08006 * 119.94848 * 179.76203 * 25 14 13 43 43 H 1.08995 * 109.81556 * 60.47591 * 27 9 7 44 44 H 1.09002 * 109.81535 * 299.56679 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1313 -2.5556 -0.0028 11 6 -0.4226 -4.0350 -0.0043 12 6 -1.6208 -4.7285 -0.0054 13 6 -1.6217 -6.1100 -0.0062 14 6 -0.4244 -6.8013 -0.0065 15 6 -0.4239 -8.3083 -0.0068 16 7 -0.4242 -8.7965 -1.3880 17 6 -0.4243 -10.1215 -1.6345 18 8 -0.4247 -10.9097 -0.7128 19 6 -0.4251 -10.6236 -3.0554 20 9 0.6788 -10.1205 -3.7523 21 6 -0.4258 -12.1684 -3.0837 22 6 -1.7413 -12.5300 -3.8084 23 8 -2.0552 -11.3672 -4.6053 24 6 -1.7403 -10.2346 -3.7663 25 6 0.7714 -6.1098 -0.0016 26 6 0.7730 -4.7254 -0.0035 27 6 1.9086 -3.7334 -0.0017 28 1 -0.4850 0.8401 0.0004 29 1 -0.5568 -2.0961 0.8893 30 1 -0.5554 -2.0948 -0.8949 31 1 -2.5562 -4.1888 -0.0057 32 1 -2.5573 -6.6497 -0.0065 33 1 0.4662 -8.6714 0.5068 34 1 -1.3137 -8.6721 0.5072 35 1 -0.4242 -8.1660 -2.1252 36 1 0.4329 -12.5405 -3.6426 37 1 -0.4251 -12.5690 -2.0699 38 1 -1.5952 -13.4003 -4.4481 39 1 -2.5338 -12.7190 -3.0842 40 1 -2.5326 -10.0715 -3.0357 41 1 -1.5935 -9.3415 -4.3737 42 1 1.7067 -6.6500 0.0020 43 1 2.5185 -3.8718 0.8909 44 1 2.5206 -3.8708 -0.8933 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327696432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:16 Heat of formation + Delta-G solvation = -66.740421 kcal Electronic energy + Delta-G solvation = -27953.971404 eV Core-core repulsion = 23786.589194 eV Total energy + Delta-G solvation = -4167.382210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.35219 -40.52655 -39.72383 -38.87572 -36.51381 -34.78129 -32.46938 -32.20735 -31.31907 -30.09799 -29.49620 -27.54018 -26.10705 -24.87685 -23.91559 -22.79403 -22.08720 -20.64258 -20.49012 -20.12024 -18.58099 -17.45732 -17.07709 -16.63153 -16.28336 -15.90372 -15.66376 -15.38255 -15.31727 -14.76663 -14.65640 -14.45003 -14.35622 -14.29843 -14.05838 -13.34094 -13.22736 -13.09617 -12.76720 -12.56986 -12.29750 -12.06750 -11.93530 -11.84236 -11.76433 -11.62083 -11.48239 -11.12596 -10.89522 -10.55380 -10.40349 -10.30817 -10.22295 -10.15174 -9.85255 -9.48550 -9.01829 -8.50371 -8.10165 -6.91093 -5.86698 -3.20064 1.44973 1.66289 1.95509 2.65278 3.28044 3.33994 3.39412 3.42094 3.50998 3.82363 4.01377 4.12115 4.23729 4.36168 4.54663 4.58490 4.60040 4.85952 4.99637 5.09870 5.15185 5.17672 5.22630 5.35517 5.38594 5.39279 5.42389 5.49959 5.51520 5.77024 5.94294 5.96403 6.02304 6.09290 6.41583 6.47537 6.49913 6.67518 6.68529 6.98004 7.00693 7.26591 7.26822 7.46730 7.62064 7.63855 8.07853 9.06257 9.66050 10.32574 11.27539 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025160 B = 0.002116 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.615235 B =13230.048908 C =13367.274882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 0.918 3.082 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.085 0.915 9 N -0.601 5.601 10 C 0.205 3.795 11 C -0.078 4.078 12 C -0.112 4.112 13 C -0.102 4.102 14 C -0.136 4.136 15 C 0.168 3.832 16 N -0.709 5.709 17 C 0.506 3.494 18 O -0.521 6.521 19 C 0.070 3.930 20 F -0.180 7.180 21 C -0.172 4.172 22 C 0.045 3.955 23 O -0.361 6.361 24 C 0.033 3.967 25 C -0.082 4.082 26 C -0.106 4.106 27 C 0.175 3.825 28 H 0.255 0.745 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.408 0.592 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.037 0.963 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 -22.757 -5.163 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.749 3.251 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.353 4.353 8 H 0.102 0.898 9 N -0.327 5.327 10 C 0.080 3.920 11 C -0.079 4.079 12 C -0.131 4.131 13 C -0.121 4.121 14 C -0.137 4.137 15 C 0.046 3.954 16 N -0.360 5.360 17 C 0.289 3.711 18 O -0.397 6.397 19 C 0.048 3.952 20 F -0.160 7.160 21 C -0.210 4.210 22 C -0.032 4.032 23 O -0.280 6.280 24 C -0.045 4.045 25 C -0.101 4.101 26 C -0.106 4.106 27 C 0.049 3.951 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.243 0.757 36 H 0.116 0.884 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.055 0.945 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.109 -23.047 -4.710 24.072 hybrid contribution 0.629 1.298 -0.156 1.451 sum -4.480 -21.749 -4.866 22.733 Atomic orbital electron populations 1.69931 1.04995 1.25421 1.56665 1.24847 0.95839 0.97919 1.01797 0.85942 0.78711 0.83168 0.77325 1.20339 1.21584 1.21590 1.19031 0.90526 0.81402 1.44372 0.89763 1.43967 1.01183 0.99870 1.87719 1.19756 0.85671 0.84645 1.01899 1.21581 0.92951 0.99349 0.94050 1.20506 0.97345 0.93381 1.01830 1.20815 0.96846 0.93890 1.00545 1.19401 0.93630 0.93465 1.07191 1.20213 1.03111 0.90192 0.81856 1.46194 1.73320 1.06346 1.10099 1.20373 0.77359 0.83131 0.90265 1.90723 1.48972 1.55064 1.44911 1.22535 0.86611 0.96508 0.89513 1.92969 1.54486 1.88692 1.79867 1.23576 1.00690 0.91319 1.05384 1.23521 0.94950 0.89937 0.94792 1.89214 1.86747 1.14551 1.37440 1.24016 0.93178 0.92131 0.95172 1.20312 0.97155 0.92555 1.00075 1.20735 0.97085 0.93352 0.99477 1.19717 0.92285 0.84320 0.98757 0.93483 0.91695 0.91702 0.86014 0.86277 0.90414 0.90341 0.75708 0.88386 0.86568 0.87886 0.91209 0.89791 0.86598 0.86477 0.94525 0.94522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.32 10.44 55.49 0.58 -25.74 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.23 -6.17 10.32 -15.06 -0.16 -6.32 16 8 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 9 N -0.60 -15.29 3.41 -175.67 -0.60 -15.88 16 10 C 0.20 4.90 5.39 -5.08 -0.03 4.87 16 11 C -0.08 -1.51 6.22 -104.57 -0.65 -2.16 16 12 C -0.11 -1.75 10.05 -39.54 -0.40 -2.15 16 13 C -0.10 -1.31 9.70 -39.61 -0.38 -1.69 16 14 C -0.14 -1.71 5.25 -104.65 -0.55 -2.26 16 15 C 0.17 1.77 5.80 -5.20 -0.03 1.74 16 16 N -0.71 -6.88 5.54 -61.48 -0.34 -7.22 16 17 C 0.51 5.32 6.77 -10.99 -0.07 5.24 16 18 O -0.52 -6.81 15.28 5.56 0.08 -6.73 16 19 C 0.07 0.64 1.62 -90.20 -0.15 0.49 16 20 F -0.18 -1.90 16.88 2.25 0.04 -1.86 16 21 C -0.17 -1.33 6.52 -25.16 -0.16 -1.50 16 22 C 0.04 0.30 7.63 37.94 0.29 0.59 16 23 O -0.36 -3.30 11.65 -35.23 -0.41 -3.71 16 24 C 0.03 0.26 6.97 37.93 0.26 0.52 16 25 C -0.08 -1.20 9.70 -39.54 -0.38 -1.58 16 26 C -0.11 -1.94 6.22 -104.57 -0.65 -2.59 16 27 C 0.17 3.66 7.25 -5.08 -0.04 3.62 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.07 1.71 7.49 -51.93 -0.39 1.32 16 30 H 0.07 1.70 7.49 -51.93 -0.39 1.31 16 31 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 33 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 34 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.41 3.54 8.46 -40.82 -0.35 3.19 16 36 H 0.10 0.69 8.06 -51.92 -0.42 0.27 16 37 H 0.12 0.96 6.50 -51.93 -0.34 0.62 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.56 7.86 -51.93 -0.41 0.15 16 41 H 0.12 0.77 8.13 -51.93 -0.42 0.35 16 42 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -31.54 368.02 -9.37 -40.91 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.05 Total: 1.62 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.19 Total: -3.46 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.36 Total: -48.84 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.33 Total: -10.43 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.54 -9.37 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327696432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.827 kcal (2) G-P(sol) polarization free energy of solvation -31.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds