Wall clock time and date at job start Tue Mar 31 2020 18:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00171 * 2 1 4 4 H 1.48505 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47443 * 299.99973 * 3 2 1 6 6 H 1.48500 * 109.47103 * 59.99936 * 3 2 1 7 7 C 1.38810 * 119.99614 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99838 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00013 * 0.02562 * 7 2 1 10 10 C 1.46627 * 126.56388 * 0.02562 * 9 7 2 11 11 C 1.50785 * 107.70270 * 179.97438 * 10 9 7 12 12 C 1.38440 * 131.20608 * 179.97438 * 11 10 9 13 13 C 1.38150 * 120.09957 * 180.02562 * 12 11 10 14 14 C 1.38248 * 119.96689 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.02220 * 179.97438 * 14 13 12 16 16 N 1.46492 * 109.47589 * 89.99347 * 15 14 13 17 17 C 1.34777 * 120.00380 * 180.02562 * 16 15 14 18 18 O 1.21281 * 119.99541 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00043 * 179.97438 * 17 16 15 20 20 F 1.39903 * 110.45429 * 57.39779 * 19 17 16 21 21 C 1.54508 * 110.50908 * 180.02562 * 19 17 16 22 22 C 1.54482 * 104.06206 * 118.65011 * 21 19 17 23 23 O 1.44420 * 104.80523 * 23.97880 * 22 21 19 24 24 C 1.44427 * 105.27358 * 319.48796 * 23 22 21 25 25 C 1.38143 * 119.95739 * 0.21157 * 14 13 12 26 26 C 1.38068 * 108.86009 * 0.02562 * 11 10 9 27 27 C 1.46635 * 126.55889 * 180.02562 * 9 7 2 28 28 H 0.97006 * 119.99795 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.81595 * 299.52653 * 10 9 7 30 30 H 1.09000 * 109.81411 * 60.43693 * 10 9 7 31 31 H 1.07997 * 119.94957 * 0.03519 * 12 11 10 32 32 H 1.08009 * 120.01467 * 179.97438 * 13 12 11 33 33 H 1.08995 * 109.46948 * 209.99885 * 15 14 13 34 34 H 1.09007 * 109.47012 * 329.99478 * 15 14 13 35 35 H 0.97007 * 119.99836 * 0.02562 * 16 15 14 36 36 H 1.09010 * 110.51051 * 237.29143 * 21 19 17 37 37 H 1.09001 * 110.51388 * 359.97438 * 21 19 17 38 38 H 1.08997 * 110.37122 * 142.81142 * 22 21 19 39 39 H 1.09005 * 110.36773 * 265.14400 * 22 21 19 40 40 H 1.09002 * 110.37821 * 281.68501 * 24 23 22 41 41 H 1.08998 * 110.37625 * 159.34217 * 24 23 22 42 42 H 1.08006 * 119.94848 * 179.76203 * 25 14 13 43 43 H 1.08995 * 109.81556 * 60.47591 * 27 9 7 44 44 H 1.09002 * 109.81535 * 299.56679 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3254 -2.3881 -0.0016 10 6 -0.1313 -2.5556 -0.0028 11 6 -0.4226 -4.0350 -0.0043 12 6 -1.6208 -4.7285 -0.0054 13 6 -1.6217 -6.1100 -0.0062 14 6 -0.4244 -6.8013 -0.0065 15 6 -0.4239 -8.3083 -0.0068 16 7 -0.4242 -8.7965 -1.3880 17 6 -0.4243 -10.1215 -1.6345 18 8 -0.4247 -10.9097 -0.7128 19 6 -0.4251 -10.6236 -3.0554 20 9 0.6788 -10.1205 -3.7523 21 6 -0.4258 -12.1684 -3.0837 22 6 -1.7413 -12.5300 -3.8084 23 8 -2.0552 -11.3672 -4.6053 24 6 -1.7403 -10.2346 -3.7663 25 6 0.7714 -6.1098 -0.0016 26 6 0.7730 -4.7254 -0.0035 27 6 1.9086 -3.7334 -0.0017 28 1 -0.4850 0.8401 0.0004 29 1 -0.5568 -2.0961 0.8893 30 1 -0.5554 -2.0948 -0.8949 31 1 -2.5562 -4.1888 -0.0057 32 1 -2.5573 -6.6497 -0.0065 33 1 0.4662 -8.6714 0.5068 34 1 -1.3137 -8.6721 0.5072 35 1 -0.4242 -8.1660 -2.1252 36 1 0.4329 -12.5405 -3.6426 37 1 -0.4251 -12.5690 -2.0699 38 1 -1.5952 -13.4003 -4.4481 39 1 -2.5338 -12.7190 -3.0842 40 1 -2.5326 -10.0715 -3.0357 41 1 -1.5935 -9.3415 -4.3737 42 1 1.7067 -6.6500 0.0020 43 1 2.5185 -3.8718 0.8909 44 1 2.5206 -3.8708 -0.8933 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327696432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:16 Heat of formation + Delta-G solvation = -87.211642 kcal Electronic energy + Delta-G solvation = -27954.859103 eV Core-core repulsion = 23786.589194 eV Total energy + Delta-G solvation = -4168.269909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.09987 -41.41030 -40.93392 -39.59571 -37.92392 -35.92828 -34.14834 -33.02790 -32.49680 -31.48979 -30.38772 -28.91410 -27.72030 -26.22997 -24.63109 -23.72162 -23.34963 -22.12157 -21.56622 -21.17252 -19.36867 -19.01808 -18.10697 -17.37978 -17.23346 -16.98974 -16.63170 -16.40499 -16.29988 -16.09475 -15.92421 -15.84582 -15.41660 -15.30090 -14.96197 -14.89658 -14.52222 -13.85579 -13.64605 -13.51305 -13.48842 -13.43063 -13.33850 -13.08335 -13.04585 -12.84996 -12.74161 -12.44562 -12.11194 -12.05964 -11.98845 -11.84591 -11.65771 -11.15715 -10.94122 -10.89969 -10.30968 -9.73627 -9.61025 -8.86728 -7.95269 -5.32131 0.23232 0.43868 1.15596 1.45293 1.46718 1.57435 1.83025 2.43321 2.68633 2.75550 2.91895 3.21172 3.27375 3.42312 3.52030 3.52990 3.54294 3.77622 3.95497 3.98986 4.08952 4.11982 4.30771 4.45995 4.48485 4.53324 4.62983 4.68806 4.73719 4.76406 4.77230 4.81951 4.88576 4.95441 5.15448 5.16492 5.28191 5.30712 5.43238 5.50671 5.53813 5.55025 5.85322 6.02867 6.08370 6.22278 6.83855 6.99101 7.63685 8.31284 9.18076 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.025160 B = 0.002116 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.615235 B =13230.048908 C =13367.274882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.065 4.065 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.625 5.625 10 C 0.220 3.780 11 C -0.110 4.110 12 C -0.111 4.111 13 C -0.084 4.084 14 C -0.112 4.112 15 C 0.173 3.827 16 N -0.703 5.703 17 C 0.510 3.490 18 O -0.547 6.547 19 C 0.068 3.932 20 F -0.190 7.190 21 C -0.171 4.171 22 C 0.044 3.956 23 O -0.381 6.381 24 C 0.034 3.966 25 C -0.076 4.076 26 C -0.118 4.118 27 C 0.170 3.830 28 H 0.251 0.749 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.132 0.868 32 H 0.160 0.840 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.414 0.586 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.080 0.920 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.139 0.861 43 H 0.040 0.960 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 -25.358 -5.463 26.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.815 3.185 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.352 5.352 10 C 0.095 3.905 11 C -0.111 4.111 12 C -0.129 4.129 13 C -0.103 4.103 14 C -0.112 4.112 15 C 0.051 3.949 16 N -0.354 5.354 17 C 0.294 3.706 18 O -0.424 6.424 19 C 0.046 3.954 20 F -0.170 7.170 21 C -0.209 4.209 22 C -0.032 4.032 23 O -0.299 6.299 24 C -0.044 4.044 25 C -0.095 4.095 26 C -0.119 4.119 27 C 0.046 3.954 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.150 0.850 32 H 0.177 0.823 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.251 0.749 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.143 0.857 42 H 0.156 0.844 43 H 0.058 0.942 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.428 -25.669 -5.021 26.713 hybrid contribution 0.724 1.954 -0.058 2.085 sum -4.705 -23.715 -5.080 24.705 Atomic orbital electron populations 1.70160 1.06458 1.25762 1.57653 1.25768 0.96776 1.01356 1.01917 0.84879 0.78172 0.78610 0.76846 1.18732 1.21618 1.21667 1.19437 0.91136 0.82645 1.43970 0.89216 1.44275 1.02139 1.01202 1.87556 1.19290 0.84831 0.87989 0.98366 1.21212 0.95177 0.96474 0.98246 1.20711 0.96327 0.94760 1.01144 1.21188 0.98662 0.92471 0.97933 1.19610 0.92725 0.94638 1.04252 1.20178 1.04099 0.88191 0.82441 1.46093 1.72889 1.06359 1.10009 1.20529 0.76644 0.82939 0.90526 1.90719 1.50233 1.55702 1.45794 1.22638 0.86904 0.97247 0.88645 1.92949 1.55185 1.88905 1.80011 1.23591 1.01587 0.90447 1.05291 1.23677 0.94587 0.89821 0.95126 1.89195 1.86863 1.15478 1.38411 1.24112 0.92679 0.92173 0.95420 1.20517 0.99107 0.90817 0.99068 1.20563 0.95221 0.94497 1.01582 1.19811 0.93494 0.83263 0.98871 0.93993 0.95814 0.95699 0.85001 0.82262 0.90239 0.88780 0.74910 0.87989 0.87104 0.86152 0.90181 0.88481 0.85715 0.84360 0.94191 0.94072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.21 10.44 21.65 0.23 -56.98 16 2 C -0.07 -3.71 5.49 84.86 0.47 -3.24 16 3 Si 0.99 45.44 29.55 68.60 2.03 47.46 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 7 C -0.24 -13.82 10.32 84.03 0.87 -12.95 16 8 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 9 N -0.63 -33.38 3.41 -709.71 -2.42 -35.80 16 10 C 0.22 11.28 5.39 85.64 0.46 11.74 16 11 C -0.11 -4.33 6.22 -19.83 -0.12 -4.45 16 12 C -0.11 -3.32 10.05 22.30 0.22 -3.09 16 13 C -0.08 -1.83 9.70 22.25 0.22 -1.62 16 14 C -0.11 -2.38 5.25 -19.88 -0.10 -2.48 16 15 C 0.17 2.91 5.80 85.63 0.50 3.41 16 16 N -0.70 -11.11 5.54 -466.81 -2.58 -13.69 16 17 C 0.51 9.27 6.77 87.66 0.59 9.86 16 18 O -0.55 -12.88 15.28 -3.03 -0.05 -12.93 16 19 C 0.07 1.07 1.62 -10.52 -0.02 1.05 16 20 F -0.19 -3.64 16.88 44.97 0.76 -2.89 16 21 C -0.17 -2.31 6.52 31.61 0.21 -2.10 16 22 C 0.04 0.49 7.63 72.49 0.55 1.04 16 23 O -0.38 -6.07 11.65 -148.98 -1.74 -7.80 16 24 C 0.03 0.44 6.97 72.49 0.51 0.94 16 25 C -0.08 -2.03 9.70 22.30 0.22 -1.82 16 26 C -0.12 -4.28 6.22 -19.83 -0.12 -4.40 16 27 C 0.17 7.29 7.25 85.63 0.62 7.92 16 28 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 29 H 0.02 1.37 7.49 -2.39 -0.02 1.35 16 30 H 0.03 1.42 7.49 -2.39 -0.02 1.41 16 31 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.08 1.41 8.08 -2.39 -0.02 1.39 16 34 H 0.09 1.41 8.09 -2.38 -0.02 1.39 16 35 H 0.41 5.69 8.46 -92.70 -0.78 4.90 16 36 H 0.10 1.26 8.06 -2.38 -0.02 1.24 16 37 H 0.11 1.64 6.50 -2.39 -0.02 1.62 16 38 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.10 0.99 7.86 -2.39 -0.02 0.97 16 41 H 0.12 1.35 8.13 -2.39 -0.02 1.33 16 42 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 43 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.12 368.02 1.53 -70.59 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.25 Total: 12.23 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 5.06 Total: -0.19 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -4.78 Total: -106.47 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.78 Total: -20.73 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.76 Total: -2.89 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -72.12 1.53 -70.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327696432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.625 kcal (2) G-P(sol) polarization free energy of solvation -72.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds