Wall clock time and date at job start Tue Mar 31 2020 17:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35981 * 116.99767 * 2 1 4 4 C 1.38664 * 120.88474 * 359.97438 * 3 2 1 5 5 N 1.32495 * 119.11643 * 180.02562 * 4 3 2 6 6 C 1.31751 * 121.04135 * 0.02562 * 5 4 3 7 7 N 1.31773 * 121.95516 * 359.71496 * 6 5 4 8 8 C 1.32846 * 120.75938 * 0.56644 * 7 6 5 9 9 N 1.39052 * 120.55463 * 179.71931 * 8 7 6 10 10 C 1.34774 * 120.00067 * 359.72696 * 9 8 7 11 11 O 1.21358 * 120.00404 * 359.97438 * 10 9 8 12 12 C 1.49369 * 120.00326 * 180.02562 * 10 9 8 13 13 O 1.21356 * 119.99643 * 353.33025 * 12 10 9 14 14 N 1.34778 * 120.00345 * 173.33204 * 12 10 9 15 15 C 1.46924 * 120.62964 * 353.06174 * 14 12 10 16 16 C 1.53190 * 108.89763 * 126.34116 * 15 14 12 17 17 C 1.53355 * 109.14549 * 54.57368 * 16 15 14 18 18 C 1.53039 * 109.61101 * 298.71742 * 17 16 15 19 19 H 1.09003 * 109.49566 * 301.42133 * 18 17 16 20 20 C 1.50696 * 109.49862 * 181.32710 * 18 17 16 21 21 H 1.08003 * 120.00037 * 0.15515 * 20 18 17 22 22 C 1.37877 * 120.00064 * 180.15985 * 20 18 17 23 23 N 1.31510 * 119.99846 * 0.02562 * 22 20 18 24 24 Si 1.86806 * 119.99992 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46964 * 59.99909 * 24 22 20 26 26 H 1.48493 * 109.46934 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46993 * 300.00141 * 24 22 20 28 28 C 1.46919 * 120.63048 * 173.08214 * 14 12 10 29 29 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47281 * 299.99985 * 1 2 3 31 31 H 1.08998 * 109.46855 * 60.00213 * 1 2 3 32 32 H 1.08007 * 120.44288 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.02410 * 179.97438 * 6 5 4 34 34 H 0.97001 * 120.00618 * 179.73291 * 9 8 7 35 35 H 1.09006 * 109.58841 * 246.20206 * 15 14 12 36 36 H 1.09005 * 109.58746 * 6.48146 * 15 14 12 37 37 H 1.08996 * 109.50237 * 174.65514 * 16 15 14 38 38 H 1.09004 * 109.49540 * 294.75932 * 16 15 14 39 39 H 1.09003 * 109.41502 * 178.67484 * 17 16 15 40 40 H 1.09001 * 109.41691 * 58.75507 * 17 16 15 41 41 H 0.97004 * 120.00019 * 180.02562 * 23 22 20 42 42 H 1.09000 * 109.58924 * 353.37735 * 28 14 12 43 43 H 1.09000 * 109.58768 * 113.65933 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.3091 2.3861 -0.0005 5 7 1.9467 3.5475 -0.0010 6 6 3.2632 3.5998 -0.0015 7 7 4.0044 2.5103 0.0040 8 6 3.4428 1.3064 -0.0009 9 7 4.2291 0.1596 -0.0009 10 6 5.5729 0.2639 -0.0015 11 8 6.0966 1.3586 -0.0024 12 6 6.4176 -0.9680 -0.0020 13 8 5.8998 -2.0588 0.1201 14 7 7.7548 -0.8682 -0.1381 15 6 8.3821 0.4261 -0.4379 16 6 9.4673 0.7053 0.6067 17 6 10.4441 -0.4762 0.6454 18 6 9.6958 -1.7483 1.0502 19 1 9.2326 -1.6029 2.0261 20 6 10.6640 -2.9011 1.1190 21 1 11.7093 -2.7422 0.8989 22 6 10.2153 -4.1586 1.4631 23 7 8.9424 -4.3521 1.7306 24 14 11.4154 -5.5877 1.5477 25 1 12.4654 -5.2932 2.5556 26 1 10.6879 -6.8225 1.9363 27 1 12.0467 -5.7833 0.2179 28 6 8.6127 -2.0516 0.0102 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2295 2.3545 -0.0005 33 1 3.7493 4.5643 -0.0024 34 1 3.8107 -0.7155 -0.0006 35 1 8.8306 0.3935 -1.4309 36 1 7.6296 1.2139 -0.4026 37 1 10.0032 1.6162 0.3401 38 1 9.0059 0.8275 1.5867 39 1 11.2316 -0.2717 1.3708 40 1 10.8861 -0.6134 -0.3415 41 1 8.6267 -5.2368 1.9730 42 1 8.0128 -2.8984 0.3436 43 1 9.0780 -2.2879 -0.9468 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328102147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:35 Heat of formation + Delta-G solvation = -19.455066 kcal Electronic energy + Delta-G solvation = -28983.657805 eV Core-core repulsion = 24838.246004 eV Total energy + Delta-G solvation = -4145.411802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82743 -40.49722 -38.85856 -38.40340 -36.95867 -35.67426 -33.32603 -32.98982 -31.76600 -30.86827 -29.77368 -28.11338 -26.50009 -25.09375 -24.52795 -24.07841 -22.45841 -21.82761 -20.51060 -19.29955 -18.53488 -18.20451 -17.99616 -17.02923 -16.61496 -16.38570 -16.01765 -15.70090 -15.45677 -14.99636 -14.67602 -14.55766 -14.46344 -14.04308 -13.87107 -13.73333 -13.36216 -12.89637 -12.61138 -12.53729 -12.20785 -12.07410 -11.86081 -11.70066 -11.58910 -11.34917 -10.97991 -10.74617 -10.49759 -10.31092 -10.18886 -10.07153 -9.92445 -9.62563 -9.19329 -9.13896 -8.58374 -8.51242 -8.43093 -7.89341 -6.03915 -4.12097 0.57530 0.68969 1.77983 2.21695 2.61066 3.30331 3.36254 3.37763 3.39792 3.54441 3.65925 3.84989 3.92631 4.33285 4.33471 4.41133 4.65864 4.70254 4.72904 5.06911 5.13096 5.26683 5.55361 5.66513 5.72084 5.88441 5.96907 6.18364 6.29667 6.37004 6.52718 6.57431 6.65835 6.72045 6.83687 6.96956 6.97520 7.08097 7.13007 7.54930 7.70776 7.82356 7.91419 7.95176 8.08057 8.30468 8.47309 8.91662 9.53520 11.01720 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.002876 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.004581 B = 9734.327202 C =10956.546671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.307 6.307 3 C -0.007 4.007 4 C 0.085 3.915 5 N -0.511 5.511 6 C 0.291 3.709 7 N -0.481 5.481 8 C 0.393 3.607 9 N -0.627 5.627 10 C 0.505 3.495 11 O -0.441 6.441 12 C 0.498 3.502 13 O -0.519 6.519 14 N -0.562 5.562 15 C 0.049 3.951 16 C -0.127 4.127 17 C -0.113 4.113 18 C 0.041 3.959 19 H 0.030 0.970 20 C -0.520 4.520 21 H 0.059 0.941 22 C 0.062 3.938 23 N -0.883 5.883 24 Si 0.895 3.105 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.108 3.892 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.173 0.827 33 H 0.204 0.796 34 H 0.437 0.563 35 H 0.057 0.943 36 H 0.141 0.859 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.265 0.735 42 H 0.124 0.876 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 12.656 -4.909 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.218 6.218 3 C -0.060 4.060 4 C -0.079 4.079 5 N -0.229 5.229 6 C 0.002 3.998 7 N -0.202 5.202 8 C 0.150 3.850 9 N -0.277 5.277 10 C 0.288 3.712 11 O -0.309 6.309 12 C 0.279 3.721 13 O -0.397 6.397 14 N -0.294 5.294 15 C -0.072 4.072 16 C -0.165 4.165 17 C -0.151 4.151 18 C 0.022 3.978 19 H 0.048 0.952 20 C -0.558 4.558 21 H 0.078 0.922 22 C -0.140 4.140 23 N -0.521 5.521 24 Si 0.722 3.278 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.202 1.202 28 C -0.011 4.011 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.190 0.810 33 H 0.220 0.780 34 H 0.277 0.723 35 H 0.076 0.924 36 H 0.157 0.843 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.142 0.858 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.175 13.274 -4.788 21.466 hybrid contribution -0.150 -1.946 0.083 1.954 sum -16.325 11.328 -4.706 20.420 Atomic orbital electron populations 1.23175 0.77318 1.04944 1.01551 1.86096 1.22181 1.24549 1.88949 1.20218 0.91972 0.87909 1.05937 1.23157 1.00973 0.86225 0.97539 1.68264 1.11661 1.28046 1.14897 1.24853 0.85737 0.96786 0.92389 1.68513 1.39407 0.96483 1.15787 1.18189 0.84710 0.87742 0.94339 1.43345 1.06152 1.08394 1.69761 1.21227 0.82256 0.91144 0.76585 1.90432 1.69355 1.28642 1.42467 1.19483 0.83928 0.87846 0.80880 1.90784 1.72136 1.27296 1.49459 1.48461 1.04275 1.12230 1.64451 1.23081 0.99244 0.86976 0.97932 1.21909 0.97016 0.98616 0.99009 1.21728 0.97441 0.95441 1.00509 1.18968 0.92611 0.91872 0.94342 0.95210 1.21054 0.94361 0.92899 1.47495 0.92249 1.25059 0.95234 0.98968 0.94784 1.69854 1.13419 1.22985 1.45795 0.86615 0.81037 0.81596 0.78521 1.20251 1.21242 1.20218 1.22550 0.92937 0.86347 0.99275 0.87369 0.92220 0.92264 0.81035 0.77952 0.72273 0.92417 0.84271 0.92079 0.92277 0.93010 0.93191 0.92544 0.85817 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.84 101.05 0.99 1.11 16 2 O -0.31 -2.84 9.86 -19.68 -0.19 -3.03 16 3 C -0.01 -0.07 6.75 -38.77 -0.26 -0.33 16 4 C 0.09 0.77 10.30 -17.11 -0.18 0.60 16 5 N -0.51 -5.39 10.43 -14.54 -0.15 -5.54 16 6 C 0.29 3.21 12.28 -92.21 -1.13 2.07 16 7 N -0.48 -6.65 8.03 -13.63 -0.11 -6.76 16 8 C 0.39 5.28 7.48 -154.27 -1.15 4.12 16 9 N -0.63 -9.07 5.37 -11.59 -0.06 -9.13 16 10 C 0.51 8.59 7.74 -11.62 -0.09 8.50 16 11 O -0.44 -7.71 11.40 5.49 0.06 -7.65 16 12 C 0.50 9.98 7.74 -11.62 -0.09 9.89 16 13 O -0.52 -11.62 15.94 5.49 0.09 -11.54 16 14 N -0.56 -11.61 2.97 -173.31 -0.52 -12.13 16 15 C 0.05 0.87 6.26 -3.71 -0.02 0.85 16 16 C -0.13 -2.25 6.11 -26.45 -0.16 -2.41 16 17 C -0.11 -2.32 5.11 -26.53 -0.14 -2.46 16 18 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 19 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 20 C -0.52 -13.97 8.56 -34.44 -0.29 -14.26 16 21 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 23 N -0.88 -25.23 11.39 55.43 0.63 -24.60 16 24 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C 0.11 2.60 5.38 -3.71 -0.02 2.58 16 29 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 31 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16 32 H 0.17 0.94 6.46 -52.48 -0.34 0.60 16 33 H 0.20 1.59 8.06 -52.48 -0.42 1.17 16 34 H 0.44 5.85 7.63 -40.82 -0.31 5.53 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.14 2.40 3.78 -56.76 -0.21 2.19 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.12 3.40 5.17 -51.93 -0.27 3.13 16 43 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -32.36 355.07 -8.05 -40.41 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.28 Total: 5.92 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: -2.85 Total: 12.68 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.21 Total: -58.16 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.04 Total: -22.22 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.36 -8.05 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328102147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.954 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds