Wall clock time and date at job start Tue Mar 31 2020 17:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35981 * 116.99767 * 2 1 4 4 C 1.38664 * 120.88474 * 359.97438 * 3 2 1 5 5 N 1.32495 * 119.11643 * 180.02562 * 4 3 2 6 6 C 1.31751 * 121.04135 * 0.02562 * 5 4 3 7 7 N 1.31773 * 121.95516 * 359.71496 * 6 5 4 8 8 C 1.32846 * 120.75938 * 0.56644 * 7 6 5 9 9 N 1.39052 * 120.55463 * 179.71931 * 8 7 6 10 10 C 1.34774 * 120.00067 * 359.72696 * 9 8 7 11 11 O 1.21358 * 120.00404 * 359.97438 * 10 9 8 12 12 C 1.49369 * 120.00326 * 180.02562 * 10 9 8 13 13 O 1.21356 * 119.99643 * 353.33025 * 12 10 9 14 14 N 1.34778 * 120.00345 * 173.33204 * 12 10 9 15 15 C 1.46924 * 120.62964 * 353.06174 * 14 12 10 16 16 C 1.53190 * 108.89763 * 126.34116 * 15 14 12 17 17 C 1.53355 * 109.14549 * 54.57368 * 16 15 14 18 18 C 1.53039 * 109.61101 * 298.71742 * 17 16 15 19 19 H 1.09003 * 109.49566 * 301.42133 * 18 17 16 20 20 C 1.50696 * 109.49862 * 181.32710 * 18 17 16 21 21 H 1.08003 * 120.00037 * 0.15515 * 20 18 17 22 22 C 1.37877 * 120.00064 * 180.15985 * 20 18 17 23 23 N 1.31510 * 119.99846 * 0.02562 * 22 20 18 24 24 Si 1.86806 * 119.99992 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46964 * 59.99909 * 24 22 20 26 26 H 1.48493 * 109.46934 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46993 * 300.00141 * 24 22 20 28 28 C 1.46919 * 120.63048 * 173.08214 * 14 12 10 29 29 H 1.09005 * 109.47008 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47281 * 299.99985 * 1 2 3 31 31 H 1.08998 * 109.46855 * 60.00213 * 1 2 3 32 32 H 1.08007 * 120.44288 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.02410 * 179.97438 * 6 5 4 34 34 H 0.97001 * 120.00618 * 179.73291 * 9 8 7 35 35 H 1.09006 * 109.58841 * 246.20206 * 15 14 12 36 36 H 1.09005 * 109.58746 * 6.48146 * 15 14 12 37 37 H 1.08996 * 109.50237 * 174.65514 * 16 15 14 38 38 H 1.09004 * 109.49540 * 294.75932 * 16 15 14 39 39 H 1.09003 * 109.41502 * 178.67484 * 17 16 15 40 40 H 1.09001 * 109.41691 * 58.75507 * 17 16 15 41 41 H 0.97004 * 120.00019 * 180.02562 * 23 22 20 42 42 H 1.09000 * 109.58924 * 353.37735 * 28 14 12 43 43 H 1.09000 * 109.58768 * 113.65933 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.3091 2.3861 -0.0005 5 7 1.9467 3.5475 -0.0010 6 6 3.2632 3.5998 -0.0015 7 7 4.0044 2.5103 0.0040 8 6 3.4428 1.3064 -0.0009 9 7 4.2291 0.1596 -0.0009 10 6 5.5729 0.2639 -0.0015 11 8 6.0966 1.3586 -0.0024 12 6 6.4176 -0.9680 -0.0020 13 8 5.8998 -2.0588 0.1201 14 7 7.7548 -0.8682 -0.1381 15 6 8.3821 0.4261 -0.4379 16 6 9.4673 0.7053 0.6067 17 6 10.4441 -0.4762 0.6454 18 6 9.6958 -1.7483 1.0502 19 1 9.2326 -1.6029 2.0261 20 6 10.6640 -2.9011 1.1190 21 1 11.7093 -2.7422 0.8989 22 6 10.2153 -4.1586 1.4631 23 7 8.9424 -4.3521 1.7306 24 14 11.4154 -5.5877 1.5477 25 1 12.4654 -5.2932 2.5556 26 1 10.6879 -6.8225 1.9363 27 1 12.0467 -5.7833 0.2179 28 6 8.6127 -2.0516 0.0102 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2295 2.3545 -0.0005 33 1 3.7493 4.5643 -0.0024 34 1 3.8107 -0.7155 -0.0006 35 1 8.8306 0.3935 -1.4309 36 1 7.6296 1.2139 -0.4026 37 1 10.0032 1.6162 0.3401 38 1 9.0059 0.8275 1.5867 39 1 11.2316 -0.2717 1.3708 40 1 10.8861 -0.6134 -0.3415 41 1 8.6267 -5.2368 1.9730 42 1 8.0128 -2.8984 0.3436 43 1 9.0780 -2.2879 -0.9468 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328102147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:34 Heat of formation + Delta-G solvation = -41.196639 kcal Electronic energy + Delta-G solvation = -28984.600591 eV Core-core repulsion = 24838.246004 eV Total energy + Delta-G solvation = -4146.354587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.79871 -41.80746 -39.93761 -39.49025 -38.60694 -36.86154 -35.19926 -33.95453 -33.47956 -31.71718 -31.58805 -28.61369 -28.00235 -26.95170 -25.79010 -24.87081 -23.80497 -23.48923 -21.87788 -20.76808 -19.69685 -19.21769 -18.91809 -18.55496 -17.95570 -17.68335 -17.43371 -16.84347 -16.59559 -16.47939 -16.24715 -15.72877 -15.51169 -15.18719 -15.10411 -14.88022 -14.69756 -14.59237 -14.45183 -13.89614 -13.50926 -13.13746 -13.03322 -12.92327 -12.85200 -12.55019 -12.43490 -12.29945 -12.22247 -12.15170 -11.73578 -11.67454 -11.19514 -11.10716 -11.00131 -10.59009 -10.51845 -9.88388 -9.61238 -9.39558 -8.12275 -6.28690 -0.44236 -0.09149 0.45239 0.95932 1.42833 1.44099 1.52219 1.96968 2.00401 2.21976 2.42600 2.71357 2.92652 3.10837 3.17116 3.22178 3.58380 3.62714 4.12342 4.17841 4.32380 4.35186 4.42296 4.43649 4.55876 4.63578 4.72762 4.79634 4.79828 5.03222 5.05162 5.13119 5.22952 5.23186 5.29504 5.41409 5.46836 5.56462 5.80505 5.86723 5.92968 6.09974 6.26971 6.34844 6.53749 6.79245 6.86809 7.04705 7.41143 8.91663 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.002876 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.004581 B = 9734.327202 C =10956.546671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.323 6.323 3 C 0.004 3.996 4 C 0.096 3.904 5 N -0.511 5.511 6 C 0.284 3.716 7 N -0.508 5.508 8 C 0.358 3.642 9 N -0.619 5.619 10 C 0.517 3.483 11 O -0.447 6.447 12 C 0.492 3.508 13 O -0.552 6.552 14 N -0.569 5.569 15 C 0.049 3.951 16 C -0.120 4.120 17 C -0.107 4.107 18 C 0.039 3.961 19 H -0.011 1.011 20 C -0.536 4.536 21 H 0.063 0.937 22 C 0.012 3.988 23 N -0.915 5.915 24 Si 0.959 3.041 25 H -0.270 1.270 26 H -0.287 1.287 27 H -0.267 1.267 28 C 0.122 3.878 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.213 0.787 33 H 0.229 0.771 34 H 0.439 0.561 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.100 0.900 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.262 0.738 42 H 0.086 0.914 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.844 14.365 -5.665 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.234 6.234 3 C -0.050 4.050 4 C -0.069 4.069 5 N -0.228 5.228 6 C -0.004 4.004 7 N -0.229 5.229 8 C 0.117 3.883 9 N -0.269 5.269 10 C 0.298 3.702 11 O -0.317 6.317 12 C 0.274 3.726 13 O -0.431 6.431 14 N -0.300 5.300 15 C -0.071 4.071 16 C -0.158 4.158 17 C -0.145 4.145 18 C 0.020 3.980 19 H 0.007 0.993 20 C -0.574 4.574 21 H 0.081 0.919 22 C -0.188 4.188 23 N -0.553 5.553 24 Si 0.785 3.215 25 H -0.195 1.195 26 H -0.213 1.213 27 H -0.192 1.192 28 C 0.000 4.000 29 H 0.139 0.861 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.229 0.771 33 H 0.245 0.755 34 H 0.280 0.720 35 H 0.093 0.907 36 H 0.168 0.832 37 H 0.118 0.882 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.243 15.026 -5.553 23.536 hybrid contribution -0.022 -2.439 0.330 2.462 sum -17.265 12.587 -5.223 21.996 Atomic orbital electron populations 1.23558 0.74811 1.06533 1.03268 1.86102 1.24740 1.24009 1.88573 1.20203 0.90948 0.89054 1.04789 1.23804 1.02577 0.85039 0.95464 1.68360 1.11449 1.28616 1.14380 1.25354 0.86060 0.96969 0.92035 1.68426 1.40861 0.97179 1.16455 1.18355 0.85795 0.87250 0.96856 1.43091 1.05127 1.09325 1.69320 1.20370 0.82996 0.89531 0.77273 1.90403 1.69697 1.28052 1.43536 1.20053 0.84023 0.88741 0.79771 1.90753 1.72797 1.28942 1.50612 1.48460 1.04566 1.12388 1.64611 1.23305 0.99523 0.85523 0.98757 1.21873 0.96495 0.98892 0.98496 1.21622 0.97647 0.94391 1.00809 1.18903 0.92770 0.93700 0.92603 0.99263 1.21450 0.94943 0.93854 1.47198 0.91859 1.25878 0.96733 1.01691 0.94480 1.70035 1.15259 1.23246 1.46775 0.85587 0.78872 0.78178 0.78897 1.19503 1.21298 1.19239 1.22015 0.92622 0.86731 0.98585 0.86079 0.90552 0.90354 0.77100 0.75534 0.71978 0.90663 0.83241 0.88207 0.93580 0.92757 0.92269 0.92910 0.89586 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.20 16 2 O -0.32 -5.43 9.86 -93.34 -0.92 -6.35 16 3 C 0.00 0.07 6.75 22.79 0.15 0.22 16 4 C 0.10 1.46 10.30 84.69 0.87 2.33 16 5 N -0.51 -9.45 10.43 -199.92 -2.08 -11.54 16 6 C 0.28 5.77 12.28 180.90 2.22 7.99 16 7 N -0.51 -13.61 8.03 -197.04 -1.58 -15.20 16 8 C 0.36 9.40 7.48 133.12 1.00 10.39 16 9 N -0.62 -18.16 5.37 -308.93 -1.66 -19.82 16 10 C 0.52 17.88 7.74 87.24 0.67 18.55 16 11 O -0.45 -15.57 11.40 -3.27 -0.04 -15.61 16 12 C 0.49 20.48 7.74 87.24 0.68 21.16 16 13 O -0.55 -26.05 15.94 -3.26 -0.05 -26.10 16 14 N -0.57 -24.10 2.97 -820.59 -2.44 -26.54 16 15 C 0.05 1.69 6.26 86.36 0.54 2.23 16 16 C -0.12 -4.08 6.11 30.78 0.19 -3.89 16 17 C -0.11 -4.33 5.11 30.73 0.16 -4.18 16 18 C 0.04 2.01 2.25 -11.46 -0.03 1.99 16 19 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 20 C -0.54 -29.43 8.56 25.60 0.22 -29.21 16 21 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 22 C 0.01 0.66 5.30 84.66 0.45 1.11 16 23 N -0.91 -54.44 11.39 21.45 0.24 -54.19 16 24 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 28 C 0.12 6.09 5.38 86.36 0.46 6.55 16 29 H 0.12 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.08 0.27 7.71 -2.39 -0.02 0.26 16 31 H 0.08 0.24 7.71 -2.39 -0.02 0.22 16 32 H 0.21 1.35 6.46 -2.91 -0.02 1.33 16 33 H 0.23 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.44 12.13 7.63 -92.71 -0.71 11.42 16 35 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.15 4.99 3.78 -78.94 -0.30 4.69 16 37 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 42 H 0.09 5.01 5.17 -2.39 -0.01 4.99 16 43 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -73.16 355.07 2.27 -70.90 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.07 Total: 22.19 kcal Atomic # 6 Polarization: 27.74 SS G_CDS: 8.70 Total: 36.44 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -7.52 Total: -127.28 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -1.01 Total: -48.05 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -73.16 2.27 -70.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328102147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.700 kcal (2) G-P(sol) polarization free energy of solvation -73.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds