Wall clock time and date at job start Tue Mar 31 2020 17:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99818 * 2 1 4 4 C 1.52999 * 109.46814 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46781 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46919 * 186.58045 * 5 4 3 7 7 C 1.46901 * 111.00007 * 170.14038 * 6 5 4 8 8 C 1.50699 * 109.47273 * 196.49721 * 7 6 5 9 9 O 1.21292 * 119.99953 * 5.60558 * 8 7 6 10 10 N 1.34775 * 120.00226 * 185.60077 * 8 7 6 11 11 C 1.37091 * 120.00333 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00061 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00394 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99766 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00412 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46875 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47420 * 119.99885 * 15 13 11 18 18 H 1.48498 * 109.47019 * 240.00087 * 15 13 11 19 19 C 1.46903 * 111.00370 * 294.09322 * 6 5 4 20 20 H 1.08999 * 110.01743 * 207.44089 * 19 6 5 21 21 C 1.53882 * 110.02329 * 86.06530 * 19 6 5 22 22 C 1.54194 * 108.68803 * 193.57498 * 21 19 6 23 23 S 1.82923 * 105.11088 * 27.83457 * 22 21 19 24 24 O 1.42091 * 109.35319 * 244.51803 * 23 22 21 25 25 O 1.42097 * 109.47333 * 111.34545 * 23 22 21 26 26 C 1.55047 * 110.02841 * 328.82887 * 19 6 5 27 27 H 1.09003 * 109.47388 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47356 * 300.00145 * 1 2 3 29 29 H 1.09007 * 109.47153 * 59.99901 * 1 2 3 30 30 H 1.09001 * 109.47249 * 300.00094 * 3 2 1 31 31 H 1.08997 * 109.47049 * 59.99991 * 3 2 1 32 32 H 1.09001 * 109.47135 * 299.99976 * 4 3 2 33 33 H 1.08997 * 109.47473 * 60.00062 * 4 3 2 34 34 H 1.08992 * 109.47280 * 306.58076 * 5 4 3 35 35 H 1.09002 * 109.46898 * 66.58777 * 5 4 3 36 36 H 1.08995 * 109.47124 * 316.49807 * 7 6 5 37 37 H 1.09001 * 109.47128 * 76.50018 * 7 6 5 38 38 H 0.96998 * 119.99982 * 0.02562 * 10 8 7 39 39 H 0.96999 * 119.99987 * 180.02562 * 14 13 11 40 40 H 1.08998 * 109.64619 * 313.38106 * 21 19 6 41 41 H 1.08998 * 109.64975 * 73.67922 * 21 19 6 42 42 H 1.08996 * 110.27414 * 268.94165 * 22 21 19 43 43 H 1.09004 * 110.42690 * 146.80604 * 22 21 19 44 44 H 1.09003 * 110.78467 * 279.98896 * 26 19 6 45 45 H 1.08998 * 110.79218 * 43.44691 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5825 -0.0013 6 7 5.6136 2.4702 -0.1606 7 6 6.2202 3.7866 -0.3998 8 6 7.6106 3.6062 -0.9522 9 8 8.0155 2.4958 -1.2248 10 7 8.4042 4.6786 -1.1434 11 6 9.6692 4.5145 -1.6455 12 1 10.0299 3.5258 -1.8882 13 6 10.4876 5.6201 -1.8421 14 7 10.0491 6.8230 -1.5464 15 14 12.2111 5.3965 -2.5268 16 1 12.4618 3.9540 -2.7753 17 1 12.3390 6.1482 -3.8011 18 1 13.2030 5.9094 -1.5479 19 6 6.2218 1.8143 1.0047 20 1 7.2519 2.1493 1.1260 21 6 6.1818 0.2860 0.8296 22 6 6.5020 -0.3752 2.1853 23 16 5.9510 0.8305 3.4458 24 8 7.0770 1.2934 4.1786 25 8 4.8220 0.3121 4.1355 26 6 5.4046 2.1369 2.2822 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.6885 1.8465 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 3.8573 0.6436 0.8891 33 1 3.8567 0.6440 -0.8908 34 1 3.7456 3.1633 -0.8264 35 1 3.9328 3.0807 0.9418 36 1 5.6139 4.3413 -1.1159 37 1 6.2709 4.3391 0.5384 38 1 8.0805 5.5665 -0.9251 39 1 10.6202 7.5949 -1.6840 40 1 5.1890 -0.0192 0.4991 41 1 6.9218 -0.0176 0.0891 42 1 7.5736 -0.5533 2.2749 43 1 5.9532 -1.3110 2.2912 44 1 5.6581 3.1258 2.6641 45 1 4.3350 2.0588 2.0873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335030626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:44 Heat of formation + Delta-G solvation = -125.573043 kcal Electronic energy + Delta-G solvation = -28038.676975 eV Core-core repulsion = 23991.814753 eV Total energy + Delta-G solvation = -4046.862222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.75239 -38.15148 -37.54017 -37.08325 -36.07445 -34.12921 -33.89962 -32.47062 -31.23971 -29.61182 -27.77031 -26.60207 -25.57378 -24.69956 -23.36837 -21.45503 -20.40466 -19.18773 -18.95185 -17.93620 -17.35980 -17.05396 -16.57498 -16.20315 -15.97634 -15.68516 -15.37644 -15.06152 -14.76035 -14.64887 -14.36413 -14.28472 -13.72721 -13.65696 -13.34433 -12.96969 -12.82332 -12.29929 -12.27905 -12.16327 -12.12636 -12.04922 -11.86404 -11.81707 -11.54643 -11.44293 -11.37286 -11.08884 -10.98137 -10.71320 -10.37917 -10.36632 -10.26030 -10.25198 -9.90087 -9.54019 -8.60054 -8.09695 -7.99971 -6.45323 -3.86098 -0.02645 2.44631 3.14203 3.25083 3.29147 3.34034 3.51835 3.80154 3.85367 3.93834 4.16773 4.38416 4.61477 4.62680 4.69904 4.73109 4.88063 4.95990 4.99635 5.03852 5.07950 5.12495 5.19231 5.22865 5.27243 5.38024 5.39674 5.43669 5.52555 5.61637 5.69811 5.77274 5.82427 5.97661 6.12911 6.21236 6.24256 6.89195 6.98682 7.08661 7.52263 8.02227 8.57088 9.14591 9.50096 10.00979 10.72395 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003319 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.616493 B = 8433.815730 C = 9909.723411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.060 3.940 4 C -0.131 4.131 5 C 0.047 3.953 6 N -0.491 5.491 7 C 0.042 3.958 8 C 0.440 3.560 9 O -0.575 6.575 10 N -0.564 5.564 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.929 3.071 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.099 3.901 20 H 0.109 0.891 21 C -0.118 4.118 22 C -0.587 4.587 23 S 2.385 3.615 24 O -0.938 6.938 25 O -0.944 6.944 26 C -0.642 4.642 27 H 0.085 0.915 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.667 -8.599 5.455 19.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.017 4.017 4 C -0.168 4.168 5 C -0.081 4.081 6 N -0.214 5.214 7 C -0.089 4.089 8 C 0.225 3.775 9 O -0.458 6.458 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.122 0.878 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.756 3.244 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.012 4.012 20 H 0.127 0.873 21 C -0.157 4.157 22 C -0.718 4.718 23 S 2.568 3.432 24 O -0.935 6.935 25 O -0.941 6.941 26 C -0.773 4.773 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.125 0.875 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.084 -9.655 5.830 19.644 hybrid contribution 0.296 1.492 -0.365 1.564 sum -15.788 -8.164 5.465 18.595 Atomic orbital electron populations 1.22735 0.81079 1.02750 0.99926 1.87878 1.19645 1.27994 1.95417 1.22533 0.94147 0.84739 1.00304 1.21936 0.92413 0.97881 1.04562 1.22237 0.87965 0.96571 1.01348 1.61481 1.02236 1.20867 1.36774 1.21970 0.96662 0.89591 1.00697 1.19703 0.86527 0.85792 0.85503 1.90524 1.75094 1.24483 1.55729 1.41880 1.13654 1.07846 1.56700 1.19735 0.89040 0.95370 1.38627 0.87807 1.25262 1.00301 0.94653 0.97707 1.69613 1.37874 0.98270 1.48495 0.85811 0.81569 0.78695 0.78334 1.19197 1.20767 1.20752 1.22410 0.98766 0.94977 0.85043 0.87289 1.22310 1.06161 0.92381 0.94810 1.30455 1.12810 1.14971 1.13533 1.09077 0.76120 0.79688 0.78268 1.93627 1.51133 1.79972 1.68735 1.93596 1.51319 1.78310 1.70893 1.31496 1.12091 1.18144 1.15539 0.89652 0.94092 0.94109 0.92999 0.93329 0.90424 0.89128 0.90020 0.93305 0.88871 0.92872 0.77529 0.91899 0.88279 0.87507 0.84364 0.84441 0.84327 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.08 10.70 -35.23 -0.38 -4.45 16 3 C 0.06 0.53 5.94 37.16 0.22 0.75 16 4 C -0.13 -1.27 3.76 -26.73 -0.10 -1.37 16 5 C 0.05 0.48 4.43 -3.82 -0.02 0.46 16 6 N -0.49 -6.78 4.04 -226.24 -0.91 -7.70 16 7 C 0.04 0.66 5.40 -4.98 -0.03 0.63 16 8 C 0.44 9.59 7.14 -10.99 -0.08 9.52 16 9 O -0.57 -14.34 15.19 5.55 0.08 -14.25 16 10 N -0.56 -13.59 5.29 -10.97 -0.06 -13.64 16 11 C -0.30 -8.03 9.68 -14.94 -0.14 -8.18 16 12 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 15 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 C 0.10 1.30 1.96 -66.17 -0.13 1.17 16 20 H 0.11 1.71 6.86 -51.93 -0.36 1.35 16 21 C -0.12 -1.36 5.61 -25.65 -0.14 -1.51 16 22 C -0.59 -5.67 7.26 37.78 0.27 -5.40 16 23 S 2.38 27.39 6.10 -107.50 -0.66 26.74 16 24 O -0.94 -14.44 18.14 -57.73 -1.05 -15.49 16 25 O -0.94 -13.10 18.15 -57.73 -1.05 -14.15 16 26 C -0.64 -6.65 5.51 38.24 0.21 -6.44 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.73 4.57 -51.93 -0.24 0.50 16 33 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 34 H 0.08 0.77 7.86 -51.93 -0.41 0.36 16 35 H 0.05 0.43 5.74 -51.93 -0.30 0.13 16 36 H 0.09 1.29 7.80 -51.93 -0.41 0.89 16 37 H 0.05 0.74 8.04 -51.93 -0.42 0.33 16 38 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 39 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 40 H 0.10 1.01 4.20 -51.93 -0.22 0.79 16 41 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.14 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.15 1.29 4.37 -51.93 -0.23 1.06 16 LS Contribution 368.72 15.07 5.56 5.56 Total: -1.00 -35.59 368.72 -8.29 -43.88 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.62 Total: 9.65 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 1.08 Total: -8.54 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.25 Total: -44.62 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -2.39 Total: -48.34 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 27.39 SS G_CDS: -0.66 Total: 26.74 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.59 -8.29 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335030626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.692 kcal (2) G-P(sol) polarization free energy of solvation -35.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds