Wall clock time and date at job start Tue Mar 31 2020 17:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42906 * 113.99818 * 2 1 4 4 C 1.52999 * 109.46814 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46781 * 179.97438 * 4 3 2 6 6 N 1.46899 * 109.46919 * 186.58045 * 5 4 3 7 7 C 1.46901 * 111.00007 * 170.14038 * 6 5 4 8 8 C 1.50699 * 109.47273 * 196.49721 * 7 6 5 9 9 O 1.21292 * 119.99953 * 5.60558 * 8 7 6 10 10 N 1.34775 * 120.00226 * 185.60077 * 8 7 6 11 11 C 1.37091 * 120.00333 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00061 * 0.02562 * 11 10 8 13 13 C 1.38951 * 120.00394 * 180.02562 * 11 10 8 14 14 N 1.31411 * 119.99766 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00412 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46875 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47420 * 119.99885 * 15 13 11 18 18 H 1.48498 * 109.47019 * 240.00087 * 15 13 11 19 19 C 1.46903 * 111.00370 * 294.09322 * 6 5 4 20 20 H 1.08999 * 110.01743 * 207.44089 * 19 6 5 21 21 C 1.53882 * 110.02329 * 86.06530 * 19 6 5 22 22 C 1.54194 * 108.68803 * 193.57498 * 21 19 6 23 23 S 1.82923 * 105.11088 * 27.83457 * 22 21 19 24 24 O 1.42091 * 109.35319 * 244.51803 * 23 22 21 25 25 O 1.42097 * 109.47333 * 111.34545 * 23 22 21 26 26 C 1.55047 * 110.02841 * 328.82887 * 19 6 5 27 27 H 1.09003 * 109.47388 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47356 * 300.00145 * 1 2 3 29 29 H 1.09007 * 109.47153 * 59.99901 * 1 2 3 30 30 H 1.09001 * 109.47249 * 300.00094 * 3 2 1 31 31 H 1.08997 * 109.47049 * 59.99991 * 3 2 1 32 32 H 1.09001 * 109.47135 * 299.99976 * 4 3 2 33 33 H 1.08997 * 109.47473 * 60.00062 * 4 3 2 34 34 H 1.08992 * 109.47280 * 306.58076 * 5 4 3 35 35 H 1.09002 * 109.46898 * 66.58777 * 5 4 3 36 36 H 1.08995 * 109.47124 * 316.49807 * 7 6 5 37 37 H 1.09001 * 109.47128 * 76.50018 * 7 6 5 38 38 H 0.96998 * 119.99982 * 0.02562 * 10 8 7 39 39 H 0.96999 * 119.99987 * 180.02562 * 14 13 11 40 40 H 1.08998 * 109.64619 * 313.38106 * 21 19 6 41 41 H 1.08998 * 109.64975 * 73.67922 * 21 19 6 42 42 H 1.08996 * 110.27414 * 268.94165 * 22 21 19 43 43 H 1.09004 * 110.42690 * 146.80604 * 22 21 19 44 44 H 1.09003 * 110.78467 * 279.98896 * 26 19 6 45 45 H 1.08998 * 110.79218 * 43.44691 * 26 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1576 2.5825 -0.0013 6 7 5.6136 2.4702 -0.1606 7 6 6.2202 3.7866 -0.3998 8 6 7.6106 3.6062 -0.9522 9 8 8.0155 2.4958 -1.2248 10 7 8.4042 4.6786 -1.1434 11 6 9.6692 4.5145 -1.6455 12 1 10.0299 3.5258 -1.8882 13 6 10.4876 5.6201 -1.8421 14 7 10.0491 6.8230 -1.5464 15 14 12.2111 5.3965 -2.5268 16 1 12.4618 3.9540 -2.7753 17 1 12.3390 6.1482 -3.8011 18 1 13.2030 5.9094 -1.5479 19 6 6.2218 1.8143 1.0047 20 1 7.2519 2.1493 1.1260 21 6 6.1818 0.2860 0.8296 22 6 6.5020 -0.3752 2.1853 23 16 5.9510 0.8305 3.4458 24 8 7.0770 1.2934 4.1786 25 8 4.8220 0.3121 4.1355 26 6 5.4046 2.1369 2.2822 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.6885 1.8465 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 3.8573 0.6436 0.8891 33 1 3.8567 0.6440 -0.8908 34 1 3.7456 3.1633 -0.8264 35 1 3.9328 3.0807 0.9418 36 1 5.6139 4.3413 -1.1159 37 1 6.2709 4.3391 0.5384 38 1 8.0805 5.5665 -0.9251 39 1 10.6202 7.5949 -1.6840 40 1 5.1890 -0.0192 0.4991 41 1 6.9218 -0.0176 0.0891 42 1 7.5736 -0.5533 2.2749 43 1 5.9532 -1.3110 2.2912 44 1 5.6581 3.1258 2.6641 45 1 4.3350 2.0588 2.0873 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335030626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:43 Heat of formation + Delta-G solvation = -155.530684 kcal Electronic energy + Delta-G solvation = -28039.976036 eV Core-core repulsion = 23991.814753 eV Total energy + Delta-G solvation = -4048.161283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.89510 -39.43208 -38.56052 -38.12959 -37.12559 -35.90008 -34.99318 -33.45412 -33.11355 -30.58056 -28.77656 -27.61343 -26.47459 -26.15384 -24.42194 -22.28472 -21.50127 -20.77360 -19.91043 -19.82345 -18.30357 -18.03807 -17.66331 -17.15575 -16.90533 -16.72827 -16.56117 -16.26522 -16.08484 -15.77244 -15.61150 -15.34953 -15.01797 -14.93391 -14.38572 -14.09006 -13.90920 -13.52945 -13.43211 -13.29229 -13.17775 -13.05679 -13.01437 -12.91945 -12.68806 -12.59696 -12.39512 -12.36690 -12.11647 -12.10048 -11.81597 -11.71923 -11.46099 -11.27449 -11.12753 -10.52946 -10.27474 -9.95805 -9.25344 -8.43971 -5.91307 -0.95223 1.37391 1.42838 1.54066 1.56078 2.11432 2.27462 2.46366 2.62680 2.96151 3.06230 3.24042 3.33805 3.43425 3.72442 3.82887 3.91541 4.01383 4.04852 4.19064 4.23851 4.35585 4.44354 4.49327 4.53332 4.53816 4.57560 4.59926 4.62563 4.67033 4.78587 4.83439 4.91345 5.00346 5.12261 5.29352 5.32936 5.44624 5.85645 6.03705 6.13530 6.31906 6.64814 7.17582 7.62485 8.18003 8.73686 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003319 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.616493 B = 8433.815730 C = 9909.723411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.059 3.941 4 C -0.129 4.129 5 C 0.045 3.955 6 N -0.508 5.508 7 C 0.052 3.948 8 C 0.440 3.560 9 O -0.609 6.609 10 N -0.578 5.578 11 C -0.326 4.326 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.922 5.922 15 Si 0.988 3.012 16 H -0.273 1.273 17 H -0.272 1.272 18 H -0.274 1.274 19 C 0.092 3.908 20 H 0.076 0.924 21 C -0.117 4.117 22 C -0.573 4.573 23 S 2.396 3.604 24 O -0.982 6.982 25 O -0.966 6.966 26 C -0.626 4.626 27 H 0.092 0.908 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.395 0.605 39 H 0.276 0.724 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.143 0.857 43 H 0.166 0.834 44 H 0.152 0.848 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.453 -8.457 5.585 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.018 4.018 4 C -0.167 4.167 5 C -0.082 4.082 6 N -0.231 5.231 7 C -0.079 4.079 8 C 0.227 3.773 9 O -0.495 6.495 10 N -0.216 5.216 11 C -0.456 4.456 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.563 5.563 15 Si 0.812 3.188 16 H -0.198 1.198 17 H -0.197 1.197 18 H -0.199 1.199 19 C -0.019 4.019 20 H 0.094 0.906 21 C -0.155 4.155 22 C -0.705 4.705 23 S 2.583 3.417 24 O -0.979 6.979 25 O -0.963 6.963 26 C -0.758 4.758 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.093 0.907 38 H 0.229 0.771 39 H 0.085 0.915 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.161 0.839 43 H 0.184 0.816 44 H 0.170 0.830 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.899 -9.507 5.992 21.134 hybrid contribution 0.772 1.367 -0.452 1.634 sum -17.127 -8.140 5.539 19.756 Atomic orbital electron populations 1.22905 0.79664 1.03657 1.00843 1.87832 1.21311 1.28941 1.95633 1.22570 0.93183 0.84520 1.01528 1.21884 0.93394 0.97395 1.04002 1.22357 0.85403 0.97347 1.03091 1.61435 1.04282 1.19863 1.37507 1.21844 0.92831 0.91258 1.01923 1.20849 0.88398 0.84566 0.83467 1.90498 1.76486 1.25840 1.56644 1.41957 1.13352 1.08658 1.57664 1.19657 0.90932 0.94679 1.40338 0.90292 1.25963 1.03423 0.94262 0.97699 1.69669 1.39031 0.98666 1.48970 0.84939 0.77520 0.78241 0.78081 1.19778 1.19748 1.19941 1.22350 0.97561 0.95805 0.86195 0.90564 1.22285 1.06436 0.91673 0.95128 1.30381 1.13608 1.15338 1.11185 1.08574 0.74906 0.79852 0.78340 1.93571 1.52673 1.80942 1.70723 1.93562 1.51782 1.78820 1.72166 1.31408 1.13006 1.18211 1.13180 0.88905 0.93117 0.93215 0.92096 0.91765 0.90193 0.90585 0.88760 0.91038 0.86434 0.90683 0.77096 0.91485 0.86606 0.89732 0.83902 0.81647 0.83012 0.80895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -7.78 10.70 -148.98 -1.59 -9.38 16 3 C 0.06 0.87 5.94 71.98 0.43 1.30 16 4 C -0.13 -2.19 3.76 30.60 0.12 -2.07 16 5 C 0.04 0.78 4.43 86.31 0.38 1.16 16 6 N -0.51 -13.17 4.04 -869.68 -3.51 -16.68 16 7 C 0.05 1.56 5.40 85.56 0.46 2.02 16 8 C 0.44 19.37 7.14 87.66 0.63 20.00 16 9 O -0.61 -31.24 15.19 -3.07 -0.05 -31.29 16 10 N -0.58 -28.33 5.29 -306.99 -1.62 -29.95 16 11 C -0.33 -18.04 9.68 84.04 0.81 -17.23 16 12 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 13 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 14 N -0.92 -49.10 13.05 21.66 0.28 -48.81 16 15 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 C 0.09 2.32 1.96 45.91 0.09 2.41 16 20 H 0.08 2.44 6.86 -2.39 -0.02 2.42 16 21 C -0.12 -2.60 5.61 31.30 0.18 -2.42 16 22 C -0.57 -10.38 7.26 72.39 0.53 -9.85 16 23 S 2.40 52.59 6.10 -56.49 -0.34 52.24 16 24 O -0.98 -30.35 18.14 -127.47 -2.31 -32.66 16 25 O -0.97 -25.36 18.15 -127.47 -2.31 -27.67 16 26 C -0.63 -11.64 5.51 72.68 0.40 -11.24 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.29 4.57 -2.39 -0.01 1.28 16 33 H 0.08 1.53 7.91 -2.39 -0.02 1.51 16 34 H 0.09 1.44 7.86 -2.39 -0.02 1.42 16 35 H 0.07 0.94 5.74 -2.39 -0.01 0.93 16 36 H 0.12 2.95 7.80 -2.39 -0.02 2.93 16 37 H 0.08 1.93 8.04 -2.39 -0.02 1.91 16 38 H 0.40 18.40 7.90 -92.71 -0.73 17.67 16 39 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 40 H 0.12 2.18 4.20 -2.39 -0.01 2.17 16 41 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.17 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.15 2.48 8.14 -2.39 -0.02 2.46 16 45 H 0.17 2.38 4.37 -2.39 -0.01 2.37 16 Total: -1.00 -78.25 368.72 -3.42 -81.67 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.29 Total: 32.49 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.73 Total: -14.65 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.85 Total: -95.45 kcal Atomic # 8 Polarization: -94.73 SS G_CDS: -6.27 Total: -101.00 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.34 Total: 52.24 kcal Total: -78.25 -3.42 -81.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335030626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.858 kcal (2) G-P(sol) polarization free energy of solvation -78.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds