Wall clock time and date at job start Tue Mar 31 2020 17:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46785 * 160.72641 * 3 2 1 5 5 H 1.09002 * 109.47503 * 305.00158 * 4 3 2 6 6 C 1.53002 * 109.47125 * 184.99938 * 4 3 2 7 7 C 1.52999 * 109.47128 * 175.00249 * 6 4 3 8 8 O 1.42899 * 109.46889 * 179.97438 * 7 6 4 9 9 C 1.42905 * 113.99778 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47015 * 65.00030 * 4 3 2 11 11 C 1.34785 * 119.99963 * 274.99652 * 10 4 3 12 12 O 1.21360 * 120.00138 * 0.02562 * 11 10 4 13 13 C 1.49310 * 119.99775 * 180.02562 * 11 10 4 14 14 O 1.21405 * 120.00297 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99675 * 180.02562 * 13 11 10 16 16 C 1.40292 * 120.00057 * 180.02562 * 15 13 11 17 17 C 1.40723 * 126.10005 * 359.68661 * 16 15 13 18 18 N 1.30876 * 108.37823 * 179.82166 * 17 16 15 19 19 N 1.40062 * 108.43153 * 0.43553 * 18 17 16 20 20 C 1.37299 * 126.05351 * 179.69933 * 19 18 17 21 21 H 1.08000 * 120.00264 * 180.02562 * 20 19 18 22 22 C 1.39010 * 119.99771 * 0.02562 * 20 19 18 23 23 N 1.31278 * 120.00370 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99757 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46974 * 60.00133 * 24 22 20 26 26 H 1.48502 * 109.46868 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47171 * 300.00368 * 24 22 20 28 28 C 1.35782 * 126.10101 * 179.97438 * 16 15 13 29 29 H 4.44656 * 5.63321 * 179.97438 * 4 1 2 30 30 H 1.08995 * 109.47312 * 40.72814 * 3 2 1 31 31 H 1.09002 * 109.46904 * 280.72765 * 3 2 1 32 32 H 1.08997 * 109.47213 * 54.99989 * 6 4 3 33 33 H 1.09008 * 109.46725 * 295.00106 * 6 4 3 34 34 H 1.08997 * 109.47286 * 59.99785 * 7 6 4 35 35 H 1.08997 * 109.46848 * 299.99883 * 7 6 4 36 36 H 1.09001 * 109.46558 * 60.00281 * 9 8 7 37 37 H 1.09001 * 109.47103 * 179.97438 * 9 8 7 38 38 H 1.09000 * 109.47187 * 300.00233 * 9 8 7 39 39 H 0.97001 * 120.00381 * 95.00086 * 10 4 3 40 40 H 0.96999 * 119.99834 * 359.97438 * 15 13 11 41 41 H 1.08001 * 125.80913 * 359.97273 * 17 16 15 42 42 H 0.96999 * 120.00142 * 179.97438 * 23 22 20 43 43 H 1.08004 * 126.25273 * 359.96467 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.3626 -0.4761 5 1 2.7206 1.5934 -1.4487 6 6 4.6802 1.3236 -0.5954 7 6 5.1792 2.6423 -1.1893 8 8 6.6034 2.6061 -1.3001 9 6 7.1743 3.7964 -1.8474 10 7 2.7673 2.3938 0.4893 11 6 1.5496 2.9664 0.4109 12 8 0.7746 2.6274 -0.4593 13 6 1.1544 4.0178 1.3945 14 8 1.9299 4.3573 2.2647 15 7 -0.0634 4.5900 1.3164 16 6 -0.4346 5.5783 2.2403 17 6 0.3562 6.0631 3.2985 18 7 -0.3262 6.9789 3.9377 19 7 -1.5780 7.1082 3.3228 20 6 -2.5818 7.9632 3.7054 21 1 -3.5129 7.9820 3.1585 22 6 -2.3996 8.8047 4.7967 23 7 -1.2677 8.7823 5.4612 24 14 -3.7656 9.9675 5.3177 25 1 -4.9768 9.1829 5.6679 26 1 -3.3244 10.7516 6.4992 27 1 -4.0813 10.8928 4.1999 28 6 -1.6232 6.2339 2.2762 29 1 -1.0503 -0.0005 0.0000 30 1 3.0098 -0.7779 -0.6705 31 1 3.0094 -0.1905 1.0097 32 1 4.9729 0.4987 -1.2451 33 1 5.1184 1.1811 0.3925 34 1 4.8866 3.4672 -0.5396 35 1 4.7410 2.7848 -2.1771 36 1 6.9226 4.6454 -1.2119 37 1 8.2579 3.6896 -1.8982 38 1 6.7778 3.9622 -2.8491 39 1 3.3866 2.6646 1.1850 40 1 -0.6828 4.3190 0.6209 41 1 1.3570 5.7369 3.5404 42 1 -1.1405 9.3698 6.2225 43 1 -2.4527 6.0899 1.5998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335299216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:33 Heat of formation + Delta-G solvation = 0.396876 kcal Electronic energy + Delta-G solvation = -27777.562544 eV Core-core repulsion = 23633.011588 eV Total energy + Delta-G solvation = -4144.550957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04660 -41.26017 -39.72043 -38.88112 -37.47771 -36.08380 -35.02784 -34.21585 -32.78637 -32.29848 -30.08645 -29.83209 -27.42341 -27.19845 -25.81692 -24.38605 -22.95542 -22.20379 -21.68517 -21.23589 -19.70318 -19.20097 -18.82450 -17.93906 -17.47156 -17.37301 -16.97782 -16.90198 -16.68183 -16.43836 -16.06408 -15.70644 -15.54452 -15.11417 -14.93783 -14.85626 -14.84464 -14.22162 -13.99841 -13.73381 -13.51358 -13.38591 -12.96588 -12.89022 -12.68647 -12.56383 -12.48483 -12.14626 -12.13769 -11.97742 -11.95981 -11.41928 -11.05876 -10.96308 -10.87756 -10.63577 -10.51604 -10.14881 -10.06400 -8.62730 -8.49355 -6.27259 0.33512 1.30365 1.32761 1.42207 1.56701 1.72891 1.97058 2.05286 2.10300 2.12125 2.55021 2.59269 2.75984 2.94910 3.07055 3.53857 3.60988 3.89819 4.00961 4.14198 4.32794 4.37392 4.38576 4.51702 4.52834 4.54558 4.58597 4.72799 4.86088 4.86350 4.95284 4.97308 4.98477 5.13804 5.21515 5.25190 5.30457 5.34683 5.89869 6.02992 6.18983 6.25230 6.50080 6.67268 6.85285 6.88009 7.09374 7.40506 7.62096 8.49631 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.002358 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.336624 B =11872.987956 C =13117.415393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.207 4.207 3 C -0.021 4.021 4 C 0.157 3.843 5 H 0.090 0.910 6 C -0.115 4.115 7 C 0.054 3.946 8 O -0.408 6.408 9 C 0.025 3.975 10 N -0.689 5.689 11 C 0.525 3.475 12 O -0.522 6.522 13 C 0.483 3.517 14 O -0.546 6.546 15 N -0.583 5.583 16 C -0.055 4.055 17 C -0.050 4.050 18 N -0.308 5.308 19 N -0.163 5.163 20 C -0.354 4.354 21 H 0.141 0.859 22 C -0.005 4.005 23 N -0.821 5.821 24 Si 1.019 2.981 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.253 1.253 28 C -0.076 4.076 29 H 0.221 0.779 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.417 0.583 40 H 0.422 0.578 41 H 0.175 0.825 42 H 0.278 0.722 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 -14.516 -14.157 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.207 4.207 3 C -0.058 4.058 4 C 0.054 3.946 5 H 0.108 0.892 6 C -0.152 4.152 7 C -0.022 4.022 8 O -0.328 6.328 9 C -0.071 4.071 10 N -0.343 5.343 11 C 0.304 3.696 12 O -0.397 6.397 13 C 0.265 3.735 14 O -0.424 6.424 15 N -0.228 5.228 16 C -0.161 4.161 17 C -0.225 4.225 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.485 4.485 21 H 0.159 0.841 22 C -0.217 4.217 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.177 1.177 28 C -0.227 4.227 29 H 0.238 0.762 30 H 0.146 0.854 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.255 0.745 40 H 0.260 0.740 41 H 0.192 0.808 42 H 0.088 0.912 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.711 -13.772 -12.992 21.278 hybrid contribution -0.831 0.398 -0.282 0.964 sum 8.880 -13.374 -13.274 20.831 Atomic orbital electron populations 1.25313 0.96877 0.99970 1.00875 1.23429 0.95446 1.01121 1.00741 1.19308 0.84016 0.97641 1.04846 1.21109 0.94939 0.85932 0.92660 0.89161 1.21737 0.91050 0.98050 1.04371 1.22603 0.80929 0.98564 1.00151 1.87800 1.20769 1.39386 1.84839 1.22904 0.99963 0.86667 0.97575 1.45844 1.15073 1.39400 1.34017 1.19550 0.83570 0.82040 0.84408 1.90768 1.51117 1.62374 1.35480 1.20458 0.82517 0.84146 0.86359 1.90641 1.51646 1.63404 1.36707 1.42090 1.15534 1.35171 1.29989 1.17288 0.96551 1.02637 0.99662 1.24243 1.01516 0.99662 0.97069 1.78157 0.92368 1.21488 1.21923 1.44834 1.09661 1.22203 1.16379 1.20617 0.95067 1.17038 1.15769 0.84123 1.26885 1.00355 0.99326 0.95143 1.70368 1.25087 1.33425 1.15965 0.84649 0.76336 0.76922 0.78297 1.17757 1.20188 1.17745 1.21995 1.00409 1.00954 0.99373 0.76204 0.85376 0.87989 0.86662 0.88916 0.93887 0.92753 0.94117 0.88204 0.93268 0.74502 0.74022 0.80815 0.91223 0.79585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.10 17.91 74.32 1.33 -3.77 16 2 C -0.21 -4.62 11.17 31.13 0.35 -4.27 16 3 C -0.02 -0.29 5.39 28.79 0.16 -0.14 16 4 C 0.16 2.31 2.24 44.99 0.10 2.41 16 5 H 0.09 1.55 7.58 -2.39 -0.02 1.53 16 6 C -0.11 -1.20 5.12 30.59 0.16 -1.04 16 7 C 0.05 0.80 5.83 71.98 0.42 1.22 16 8 O -0.41 -7.05 10.70 -148.98 -1.59 -8.64 16 9 C 0.03 0.33 11.01 113.37 1.25 1.58 16 10 N -0.69 -14.21 4.48 -444.00 -1.99 -16.20 16 11 C 0.52 14.67 7.20 87.22 0.63 15.30 16 12 O -0.52 -15.50 13.32 -3.28 -0.04 -15.54 16 13 C 0.48 17.07 7.85 87.23 0.69 17.76 16 14 O -0.55 -22.02 13.62 -3.42 -0.05 -22.06 16 15 N -0.58 -21.51 5.45 -305.33 -1.66 -23.17 16 16 C -0.06 -2.54 6.90 37.82 0.26 -2.28 16 17 C -0.05 -2.65 10.85 85.44 0.93 -1.72 16 18 N -0.31 -18.30 10.39 -56.43 -0.59 -18.88 16 19 N -0.16 -8.98 3.73 -189.97 -0.71 -9.69 16 20 C -0.35 -18.57 10.25 84.02 0.86 -17.71 16 21 H 0.14 6.39 7.83 -2.91 -0.02 6.36 16 22 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 23 N -0.82 -46.74 11.81 21.66 0.26 -46.48 16 24 Si 1.02 38.07 29.55 68.60 2.03 40.10 16 25 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 26 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 28 C -0.08 -3.56 11.50 83.41 0.96 -2.60 16 29 H 0.22 4.35 7.80 -4.40 -0.03 4.32 16 30 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.04 0.73 7.75 -2.39 -0.02 0.72 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.42 8.13 8.07 -92.71 -0.75 7.38 16 40 H 0.42 13.14 8.29 -92.71 -0.77 12.37 16 41 H 0.18 9.13 5.92 -2.91 -0.02 9.11 16 42 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.19 6.94 8.06 -2.91 -0.02 6.92 16 Total: -1.00 -76.09 377.83 3.74 -72.35 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: -0.46 Total: 43.28 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 8.55 Total: 4.95 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -4.69 Total: -114.42 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -1.68 Total: -46.25 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -76.09 3.74 -72.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335299216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.743 kcal (2) G-P(sol) polarization free energy of solvation -76.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds