Wall clock time and date at job start Tue Mar 31 2020 17:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 H 1.08998 * 109.47192 * 54.99687 * 4 3 2 6 6 C 1.53001 * 109.47049 * 174.99841 * 4 3 2 7 7 C 1.52997 * 109.46947 * 184.99888 * 6 4 3 8 8 O 1.42903 * 109.47261 * 180.02562 * 7 6 4 9 9 C 1.42894 * 114.00438 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47170 * 294.99766 * 4 3 2 11 11 C 1.34776 * 120.00067 * 85.00106 * 10 4 3 12 12 O 1.21369 * 119.99807 * 359.97438 * 11 10 4 13 13 C 1.49314 * 120.00273 * 180.02562 * 11 10 4 14 14 O 1.21403 * 119.99788 * 359.97438 * 13 11 10 15 15 N 1.34773 * 119.99867 * 179.97438 * 13 11 10 16 16 C 1.40293 * 119.99716 * 179.97438 * 15 13 11 17 17 C 1.40726 * 126.09804 * 359.69038 * 16 15 13 18 18 N 1.30885 * 108.37127 * 179.85366 * 17 16 15 19 19 N 1.40056 * 108.43753 * 0.40523 * 18 17 16 20 20 C 1.37295 * 126.05589 * 179.74334 * 19 18 17 21 21 H 1.07994 * 119.99919 * 180.02562 * 20 19 18 22 22 C 1.39006 * 119.99650 * 359.97438 * 20 19 18 23 23 N 1.31279 * 120.00635 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99890 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47129 * 60.00388 * 24 22 20 26 26 H 1.48500 * 109.47350 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47096 * 300.00584 * 24 22 20 28 28 C 1.35785 * 126.10011 * 180.02562 * 16 15 13 29 29 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 31 31 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 32 32 H 1.08995 * 109.47139 * 304.99688 * 6 4 3 33 33 H 1.08997 * 109.47230 * 65.00203 * 6 4 3 34 34 H 1.09005 * 109.47552 * 299.99955 * 7 6 4 35 35 H 1.09000 * 109.47551 * 59.99764 * 7 6 4 36 36 H 1.09005 * 109.47429 * 59.99190 * 9 8 7 37 37 H 1.08994 * 109.47603 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.46833 * 299.99668 * 9 8 7 39 39 H 0.96996 * 120.00116 * 265.00375 * 10 4 3 40 40 H 0.96996 * 120.00222 * 359.97438 * 15 13 11 41 41 H 1.07998 * 125.81185 * 359.97438 * 17 16 15 42 42 H 0.96991 * 120.00587 * 180.02562 * 23 22 20 43 43 H 1.07994 * 126.25298 * 359.93992 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 1 2.7221 -1.7992 -1.1813 6 6 4.6814 -1.3972 -0.3810 7 6 5.1817 -2.7922 -0.7611 8 8 6.6059 -2.7725 -0.8764 9 6 7.1780 -4.0332 -1.2305 10 7 2.7695 -2.2862 0.8581 11 6 1.5525 -2.8651 0.8705 12 8 0.7771 -2.6672 -0.0420 13 6 1.1577 -3.7490 2.0073 14 8 1.9331 -3.9466 2.9203 15 7 -0.0595 -4.3275 2.0198 16 6 -0.4303 -5.1584 3.0877 17 6 0.3652 -5.4796 4.2032 18 7 -0.3210 -6.2750 4.9839 19 7 -1.5725 -6.5003 4.3970 20 6 -2.5755 -7.2858 4.9089 21 1 -3.5061 -7.3916 4.3714 22 6 -2.3926 -7.9457 6.1186 23 7 -1.2611 -7.8175 6.7719 24 14 -3.7570 -9.0149 6.8148 25 1 -4.0702 -10.1045 5.8557 26 1 -3.3157 -9.6026 8.1053 27 1 -4.9698 -8.1874 7.0372 28 6 -1.6183 -5.8013 3.2261 29 1 -1.0498 -0.0004 0.0001 30 1 3.0090 0.6649 -0.7843 31 1 3.0092 0.3479 0.9672 32 1 4.9733 -0.6841 -1.1520 33 1 5.1195 -1.1014 0.5722 34 1 4.8899 -3.5055 0.0098 35 1 4.7437 -3.0882 -1.7143 36 1 6.7816 -4.3543 -2.1938 37 1 8.2613 -3.9345 -1.2984 38 1 6.9271 -4.7725 -0.4698 39 1 3.3890 -2.4440 1.5876 40 1 -0.6792 -4.1694 1.2906 41 1 1.3700 -5.1279 4.3851 42 1 -1.1334 -8.2782 7.6158 43 1 -2.4481 -5.7652 2.5360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335299217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:38 Heat of formation + Delta-G solvation = 25.329090 kcal Electronic energy + Delta-G solvation = -27776.345145 eV Core-core repulsion = 23632.875330 eV Total energy + Delta-G solvation = -4143.469815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61635 -39.64663 -38.50459 -37.92237 -36.54345 -34.43246 -33.37925 -33.15858 -31.93379 -30.33226 -29.30589 -28.05609 -26.74863 -25.57941 -24.44640 -23.48640 -21.44487 -20.97306 -20.39171 -19.48010 -18.42876 -17.88317 -17.47302 -16.97162 -16.59890 -16.07966 -15.70751 -15.57565 -15.44855 -15.20368 -15.08085 -14.25141 -14.17432 -14.02845 -13.69268 -13.60389 -13.34703 -13.07812 -12.96842 -12.84180 -12.03099 -11.93993 -11.74656 -11.63747 -11.55209 -11.36576 -11.28025 -11.21539 -10.87674 -10.59154 -10.47276 -10.29263 -10.11868 -9.98122 -9.23383 -9.19303 -9.05031 -8.88238 -8.13944 -6.78878 -6.61262 -4.28779 1.67918 2.57253 2.86084 2.94056 2.95061 3.02782 3.06505 3.33743 3.40664 3.71816 3.74685 3.96355 4.31715 4.36472 4.54337 4.59992 4.63206 4.80609 4.96797 4.97202 4.99427 5.04159 5.08723 5.13900 5.21260 5.34255 5.38933 5.46727 5.58621 5.74880 6.06129 6.18747 6.22466 6.35049 6.74792 6.80899 6.87499 6.91405 7.15327 7.21702 7.75791 7.76457 7.86499 8.10873 8.17600 8.48508 8.68834 9.30165 9.58870 10.34469 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.002358 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.278980 B =11873.308651 C =13117.978663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.197 4.197 3 C -0.019 4.019 4 C 0.153 3.847 5 H 0.097 0.903 6 C -0.126 4.126 7 C 0.058 3.942 8 O -0.393 6.393 9 C 0.031 3.969 10 N -0.704 5.704 11 C 0.516 3.484 12 O -0.514 6.514 13 C 0.483 3.517 14 O -0.524 6.524 15 N -0.583 5.583 16 C -0.069 4.069 17 C -0.027 4.027 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.078 4.078 29 H 0.211 0.789 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.086 0.914 38 H 0.044 0.956 39 H 0.413 0.587 40 H 0.409 0.591 41 H 0.177 0.823 42 H 0.276 0.724 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 11.193 -14.568 20.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.197 4.197 3 C -0.056 4.056 4 C 0.048 3.952 5 H 0.115 0.885 6 C -0.164 4.164 7 C -0.019 4.019 8 O -0.312 6.312 9 C -0.065 4.065 10 N -0.359 5.359 11 C 0.297 3.703 12 O -0.388 6.388 13 C 0.264 3.736 14 O -0.402 6.402 15 N -0.226 5.226 16 C -0.175 4.175 17 C -0.203 4.203 18 N -0.091 5.091 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.230 4.230 29 H 0.228 0.772 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.250 0.750 40 H 0.243 0.757 41 H 0.194 0.806 42 H 0.087 0.913 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.901 10.608 -13.246 19.647 hybrid contribution -1.038 -0.281 -0.609 1.236 sum 8.863 10.327 -13.855 19.421 Atomic orbital electron populations 1.24721 0.95826 0.99189 1.00063 1.22567 0.94111 1.01702 1.01350 1.19082 0.86056 0.96774 1.03703 1.20957 0.93616 0.89459 0.91140 0.88453 1.21793 0.92973 0.97320 1.04270 1.22543 0.81150 0.97636 1.00529 1.87829 1.20318 1.32121 1.90961 1.22753 0.99063 0.85680 0.99026 1.45787 1.16579 1.48302 1.25247 1.20233 0.82432 0.80749 0.86902 1.90758 1.50511 1.60662 1.36903 1.19708 0.83331 0.83258 0.87331 1.90652 1.51084 1.61699 1.36751 1.42139 1.14645 1.43534 1.22283 1.17249 0.97200 1.08492 0.94509 1.24146 1.01072 1.01827 0.93243 1.78263 0.90824 1.20243 1.19803 1.44555 1.09891 1.25549 1.10479 1.19873 0.94382 1.25224 1.05962 0.86494 1.25663 0.97799 0.97508 0.96149 1.70190 1.22319 1.34010 1.12876 0.85874 0.79909 0.79645 0.78623 1.19093 1.20087 1.19092 1.21299 0.99383 1.06849 0.95437 0.77175 0.88579 0.89218 0.88954 0.89775 0.92615 0.93052 0.94062 0.89575 0.93751 0.75014 0.75662 0.80588 0.91289 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 17.92 29.55 0.53 -1.72 16 2 C -0.20 -2.38 11.17 -37.12 -0.41 -2.79 16 3 C -0.02 -0.16 5.39 -29.52 -0.16 -0.32 16 4 C 0.15 1.32 2.24 -67.93 -0.15 1.17 16 5 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 6 C -0.13 -0.85 5.12 -26.73 -0.14 -0.98 16 7 C 0.06 0.48 5.83 37.16 0.22 0.70 16 8 O -0.39 -3.73 10.70 -35.23 -0.38 -4.11 16 9 C 0.03 0.23 11.01 101.05 1.11 1.34 16 10 N -0.70 -7.85 4.48 -54.28 -0.24 -8.10 16 11 C 0.52 7.53 7.20 -11.65 -0.08 7.45 16 12 O -0.51 -8.01 13.33 5.48 0.07 -7.93 16 13 C 0.48 8.64 7.85 -11.65 -0.09 8.55 16 14 O -0.52 -10.52 13.62 5.45 0.07 -10.44 16 15 N -0.58 -10.94 5.45 -10.45 -0.06 -11.00 16 16 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 17 C -0.03 -0.70 10.85 -17.02 -0.18 -0.89 16 18 N -0.26 -7.47 10.39 30.81 0.32 -7.15 16 19 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 20 C -0.32 -8.41 10.25 -14.82 -0.15 -8.56 16 21 H 0.12 2.71 7.83 -52.49 -0.41 2.30 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 23 N -0.77 -21.14 11.81 55.50 0.66 -20.48 16 24 Si 0.94 18.65 29.55 -169.99 -5.02 13.62 16 25 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 26 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 27 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 28 C -0.08 -1.84 11.50 -16.38 -0.19 -2.03 16 29 H 0.21 2.13 7.80 -54.10 -0.42 1.71 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.51 7.75 -51.93 -0.40 0.10 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.41 4.33 8.07 -40.82 -0.33 4.01 16 40 H 0.41 6.62 8.29 -40.82 -0.34 6.28 16 41 H 0.18 4.43 5.92 -52.49 -0.31 4.12 16 42 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.15 2.91 8.06 -52.49 -0.42 2.49 16 LS Contribution 377.83 15.07 5.69 5.69 Total: -1.00 -33.93 377.83 -4.85 -38.78 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -5.55 Total: 14.06 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.38 Total: 0.84 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.63 Total: -50.51 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.23 Total: -22.49 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.93 -4.85 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335299217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.113 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds