Wall clock time and date at job start Tue Mar 31 2020 17:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47168 * 10.26207 * 3 2 1 5 5 H 1.08998 * 109.47192 * 54.99687 * 4 3 2 6 6 C 1.53001 * 109.47049 * 174.99841 * 4 3 2 7 7 C 1.52997 * 109.46947 * 184.99888 * 6 4 3 8 8 O 1.42903 * 109.47261 * 180.02562 * 7 6 4 9 9 C 1.42894 * 114.00438 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47170 * 294.99766 * 4 3 2 11 11 C 1.34776 * 120.00067 * 85.00106 * 10 4 3 12 12 O 1.21369 * 119.99807 * 359.97438 * 11 10 4 13 13 C 1.49314 * 120.00273 * 180.02562 * 11 10 4 14 14 O 1.21403 * 119.99788 * 359.97438 * 13 11 10 15 15 N 1.34773 * 119.99867 * 179.97438 * 13 11 10 16 16 C 1.40293 * 119.99716 * 179.97438 * 15 13 11 17 17 C 1.40726 * 126.09804 * 359.69038 * 16 15 13 18 18 N 1.30885 * 108.37127 * 179.85366 * 17 16 15 19 19 N 1.40056 * 108.43753 * 0.40523 * 18 17 16 20 20 C 1.37295 * 126.05589 * 179.74334 * 19 18 17 21 21 H 1.07994 * 119.99919 * 180.02562 * 20 19 18 22 22 C 1.39006 * 119.99650 * 359.97438 * 20 19 18 23 23 N 1.31279 * 120.00635 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99890 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47129 * 60.00388 * 24 22 20 26 26 H 1.48500 * 109.47350 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47096 * 300.00584 * 24 22 20 28 28 C 1.35785 * 126.10011 * 180.02562 * 16 15 13 29 29 H 4.44645 * 5.63342 * 179.97438 * 4 1 2 30 30 H 1.09001 * 109.47046 * 130.25833 * 3 2 1 31 31 H 1.08996 * 109.47366 * 250.26237 * 3 2 1 32 32 H 1.08995 * 109.47139 * 304.99688 * 6 4 3 33 33 H 1.08997 * 109.47230 * 65.00203 * 6 4 3 34 34 H 1.09005 * 109.47552 * 299.99955 * 7 6 4 35 35 H 1.09000 * 109.47551 * 59.99764 * 7 6 4 36 36 H 1.09005 * 109.47429 * 59.99190 * 9 8 7 37 37 H 1.08994 * 109.47603 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.46833 * 299.99668 * 9 8 7 39 39 H 0.96996 * 120.00116 * 265.00375 * 10 4 3 40 40 H 0.96996 * 120.00222 * 359.97438 * 15 13 11 41 41 H 1.07998 * 125.81185 * 359.97438 * 17 16 15 42 42 H 0.96991 * 120.00587 * 180.02562 * 23 22 20 43 43 H 1.07994 * 126.25298 * 359.93992 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.4185 -0.2570 5 1 2.7221 -1.7992 -1.1813 6 6 4.6814 -1.3972 -0.3810 7 6 5.1817 -2.7922 -0.7611 8 8 6.6059 -2.7725 -0.8764 9 6 7.1780 -4.0332 -1.2305 10 7 2.7695 -2.2862 0.8581 11 6 1.5525 -2.8651 0.8705 12 8 0.7771 -2.6672 -0.0420 13 6 1.1577 -3.7490 2.0073 14 8 1.9331 -3.9466 2.9203 15 7 -0.0595 -4.3275 2.0198 16 6 -0.4303 -5.1584 3.0877 17 6 0.3652 -5.4796 4.2032 18 7 -0.3210 -6.2750 4.9839 19 7 -1.5725 -6.5003 4.3970 20 6 -2.5755 -7.2858 4.9089 21 1 -3.5061 -7.3916 4.3714 22 6 -2.3926 -7.9457 6.1186 23 7 -1.2611 -7.8175 6.7719 24 14 -3.7570 -9.0149 6.8148 25 1 -4.0702 -10.1045 5.8557 26 1 -3.3157 -9.6026 8.1053 27 1 -4.9698 -8.1874 7.0372 28 6 -1.6183 -5.8013 3.2261 29 1 -1.0498 -0.0004 0.0001 30 1 3.0090 0.6649 -0.7843 31 1 3.0092 0.3479 0.9672 32 1 4.9733 -0.6841 -1.1520 33 1 5.1195 -1.1014 0.5722 34 1 4.8899 -3.5055 0.0098 35 1 4.7437 -3.0882 -1.7143 36 1 6.7816 -4.3543 -2.1938 37 1 8.2613 -3.9345 -1.2984 38 1 6.9271 -4.7725 -0.4698 39 1 3.3890 -2.4440 1.5876 40 1 -0.6792 -4.1694 1.2906 41 1 1.3700 -5.1279 4.3851 42 1 -1.1334 -8.2782 7.6158 43 1 -2.4481 -5.7652 2.5360 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335299217.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:37 Heat of formation + Delta-G solvation = 0.401407 kcal Electronic energy + Delta-G solvation = -27777.426090 eV Core-core repulsion = 23632.875330 eV Total energy + Delta-G solvation = -4144.550760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04633 -41.25957 -39.72083 -38.88098 -37.47741 -36.08446 -35.02823 -34.21804 -32.78755 -32.29829 -30.08752 -29.83227 -27.42362 -27.19875 -25.81709 -24.38609 -22.95586 -22.20419 -21.68560 -21.23619 -19.70368 -19.20133 -18.82630 -17.93928 -17.47242 -17.37260 -16.97788 -16.90233 -16.68133 -16.43893 -16.06386 -15.71022 -15.54027 -15.11634 -14.93895 -14.85655 -14.84374 -14.22198 -13.99866 -13.73364 -13.51356 -13.38600 -12.96632 -12.89029 -12.68666 -12.56398 -12.48469 -12.14591 -12.13768 -11.97747 -11.96005 -11.42040 -11.05857 -10.96424 -10.87727 -10.63548 -10.51605 -10.14842 -10.06463 -8.62748 -8.49346 -6.27274 0.33507 1.30319 1.32779 1.42209 1.56694 1.72888 1.97052 2.05276 2.10155 2.12227 2.55080 2.59193 2.75960 2.94918 3.07050 3.53856 3.61009 3.89807 4.00982 4.14204 4.32799 4.37387 4.38611 4.51700 4.52831 4.54556 4.58601 4.72763 4.86101 4.86390 4.95286 4.97330 4.98471 5.13839 5.21502 5.25305 5.30445 5.34663 5.89876 6.02996 6.19038 6.25237 6.50084 6.67261 6.85276 6.87959 7.09366 7.40502 7.62118 8.49647 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.016368 B = 0.002358 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.278980 B =11873.308651 C =13117.978663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.207 4.207 3 C -0.021 4.021 4 C 0.157 3.843 5 H 0.090 0.910 6 C -0.114 4.114 7 C 0.054 3.946 8 O -0.408 6.408 9 C 0.025 3.975 10 N -0.689 5.689 11 C 0.525 3.475 12 O -0.522 6.522 13 C 0.483 3.517 14 O -0.546 6.546 15 N -0.583 5.583 16 C -0.055 4.055 17 C -0.050 4.050 18 N -0.308 5.308 19 N -0.163 5.163 20 C -0.354 4.354 21 H 0.141 0.859 22 C -0.005 4.005 23 N -0.821 5.821 24 Si 1.019 2.981 25 H -0.253 1.253 26 H -0.277 1.277 27 H -0.254 1.254 28 C -0.077 4.077 29 H 0.221 0.779 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.040 0.960 39 H 0.417 0.583 40 H 0.422 0.578 41 H 0.175 0.825 42 H 0.278 0.722 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.463 12.102 -16.271 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.207 4.207 3 C -0.058 4.058 4 C 0.054 3.946 5 H 0.108 0.892 6 C -0.152 4.152 7 C -0.022 4.022 8 O -0.328 6.328 9 C -0.071 4.071 10 N -0.343 5.343 11 C 0.304 3.696 12 O -0.398 6.398 13 C 0.265 3.735 14 O -0.424 6.424 15 N -0.228 5.228 16 C -0.161 4.161 17 C -0.225 4.225 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.485 4.485 21 H 0.159 0.841 22 C -0.217 4.217 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.177 1.177 26 H -0.202 1.202 27 H -0.178 1.178 28 C -0.227 4.227 29 H 0.238 0.762 30 H 0.146 0.854 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.255 0.745 40 H 0.260 0.740 41 H 0.192 0.808 42 H 0.088 0.912 43 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 9.713 11.557 -14.999 21.281 hybrid contribution -0.831 -0.440 -0.218 0.965 sum 8.882 11.117 -15.217 20.834 Atomic orbital electron populations 1.25298 0.96876 0.99894 1.00968 1.23427 0.95448 1.01146 1.00699 1.19309 0.84009 0.96882 1.05616 1.21109 0.94945 0.89042 0.89546 0.89158 1.21734 0.91043 0.96913 1.05516 1.22606 0.80925 0.98373 1.00344 1.87798 1.20759 1.33135 1.91103 1.22901 0.99947 0.84985 0.99273 1.45841 1.15116 1.47420 1.25947 1.19552 0.83569 0.80781 0.85672 1.90770 1.51082 1.61119 1.36779 1.20456 0.82524 0.82659 0.87837 1.90641 1.51626 1.62200 1.37930 1.42089 1.15569 1.43381 1.21745 1.17290 0.96410 1.07898 0.94536 1.24245 1.01364 1.02422 0.94462 1.78157 0.92301 1.21806 1.21676 1.44832 1.09766 1.26824 1.11647 1.20615 0.95170 1.25715 1.06987 0.84124 1.26884 1.00336 0.98446 0.96041 1.70364 1.25078 1.35808 1.13596 0.84648 0.76341 0.77622 0.77591 1.17737 1.20186 1.17768 1.21995 1.00473 1.05408 0.94865 0.76223 0.85371 0.87988 0.86661 0.88915 0.93886 0.92753 0.93279 0.88204 0.94112 0.74502 0.74022 0.80812 0.91219 0.79590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.10 17.92 74.32 1.33 -3.77 16 2 C -0.21 -4.62 11.17 31.13 0.35 -4.27 16 3 C -0.02 -0.29 5.39 28.79 0.16 -0.14 16 4 C 0.16 2.31 2.24 44.99 0.10 2.41 16 5 H 0.09 1.55 7.58 -2.39 -0.02 1.53 16 6 C -0.11 -1.20 5.12 30.59 0.16 -1.04 16 7 C 0.05 0.80 5.83 71.98 0.42 1.22 16 8 O -0.41 -7.05 10.70 -148.98 -1.59 -8.64 16 9 C 0.03 0.34 11.01 113.37 1.25 1.58 16 10 N -0.69 -14.21 4.48 -444.00 -1.99 -16.20 16 11 C 0.52 14.67 7.20 87.23 0.63 15.30 16 12 O -0.52 -15.51 13.33 -3.31 -0.04 -15.55 16 13 C 0.48 17.07 7.85 87.23 0.69 17.76 16 14 O -0.55 -22.02 13.62 -3.41 -0.05 -22.06 16 15 N -0.58 -21.51 5.45 -305.33 -1.66 -23.17 16 16 C -0.05 -2.54 6.90 37.82 0.26 -2.28 16 17 C -0.05 -2.65 10.85 85.44 0.93 -1.72 16 18 N -0.31 -18.30 10.39 -56.43 -0.59 -18.88 16 19 N -0.16 -8.97 3.73 -189.99 -0.71 -9.68 16 20 C -0.35 -18.57 10.25 84.02 0.86 -17.70 16 21 H 0.14 6.39 7.83 -2.91 -0.02 6.36 16 22 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 23 N -0.82 -46.74 11.81 21.66 0.26 -46.48 16 24 Si 1.02 38.07 29.55 68.60 2.03 40.10 16 25 H -0.25 -8.85 7.11 99.48 0.71 -8.15 16 26 H -0.28 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 28 C -0.08 -3.57 11.50 83.41 0.96 -2.61 16 29 H 0.22 4.35 7.80 -4.43 -0.03 4.32 16 30 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.04 0.73 7.75 -2.38 -0.02 0.72 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.42 8.13 8.07 -92.71 -0.75 7.38 16 40 H 0.42 13.14 8.29 -92.71 -0.77 12.37 16 41 H 0.18 9.13 5.92 -2.91 -0.02 9.11 16 42 H 0.28 14.55 8.31 -92.72 -0.77 13.78 16 43 H 0.19 6.94 8.06 -2.91 -0.02 6.92 16 Total: -1.00 -76.08 377.83 3.74 -72.35 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: -0.46 Total: 43.28 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 8.55 Total: 4.95 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -4.69 Total: -114.42 kcal Atomic # 8 Polarization: -44.57 SS G_CDS: -1.69 Total: -46.25 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -76.08 3.74 -72.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335299217.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.747 kcal (2) G-P(sol) polarization free energy of solvation -76.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds