Wall clock time and date at job start Tue Mar 31 2020 18:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48506 * 109.46750 * 269.99375 * 3 2 1 5 5 H 1.48496 * 109.47475 * 29.99252 * 3 2 1 6 6 H 1.48499 * 109.47053 * 149.99747 * 3 2 1 7 7 C 1.37883 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00009 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99615 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46603 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47120 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00052 * 179.97438 * 11 10 9 13 13 O 1.21347 * 120.00124 * 0.02562 * 12 11 10 14 14 C 1.49457 * 119.99601 * 180.02562 * 12 11 10 15 15 O 1.21347 * 120.00275 * 359.97438 * 14 12 11 16 16 N 1.34780 * 119.99509 * 180.02562 * 14 12 11 17 17 C 1.46497 * 119.99653 * 180.02562 * 16 14 12 18 18 H 1.09002 * 112.84935 * 334.66222 * 17 16 14 19 19 C 1.53786 * 113.61643 * 105.85894 * 17 16 14 20 20 C 1.53962 * 87.01719 * 89.22773 * 19 17 16 21 21 H 1.08997 * 113.53543 * 270.80998 * 20 19 17 22 22 C 1.50701 * 113.74004 * 139.94532 * 20 19 17 23 23 C 1.38257 * 119.98765 * 322.12459 * 22 20 19 24 24 C 1.38230 * 120.05129 * 179.76618 * 23 22 20 25 25 C 1.38215 * 120.02101 * 0.51288 * 24 23 22 26 26 C 1.38430 * 119.97685 * 359.74089 * 25 24 23 27 27 F 1.35099 * 120.02739 * 179.97438 * 26 25 24 28 28 C 1.38171 * 119.98296 * 142.40435 * 22 20 19 29 29 C 1.53781 * 113.61305 * 203.46742 * 17 16 14 30 30 H 0.96998 * 119.99443 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47537 * 60.00319 * 9 7 2 32 32 H 1.08997 * 109.47109 * 299.99832 * 9 7 2 33 33 H 1.09001 * 109.47343 * 60.00449 * 10 9 7 34 34 H 1.08997 * 109.47279 * 299.99762 * 10 9 7 35 35 H 0.96999 * 119.99718 * 0.02562 * 11 10 9 36 36 H 0.96995 * 120.00200 * 359.97438 * 16 14 12 37 37 H 1.08993 * 113.61491 * 203.74894 * 19 17 16 38 38 H 1.09000 * 113.61138 * 334.65232 * 19 17 16 39 39 H 1.08002 * 119.97442 * 0.02562 * 23 22 20 40 40 H 1.08005 * 119.98609 * 180.25398 * 24 23 22 41 41 H 1.07999 * 120.00976 * 179.71899 * 25 24 23 42 42 H 1.08005 * 120.01812 * 359.95046 * 28 22 20 43 43 H 1.09001 * 113.61695 * 25.34675 * 29 17 16 44 44 H 1.08996 * 113.61580 * 156.16953 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 7 5.4865 -2.6367 0.0022 12 6 6.1603 -3.8040 0.0037 13 8 5.5535 -4.8548 0.0046 14 6 7.6549 -3.8039 0.0042 15 8 8.2616 -2.7531 0.0029 16 7 8.3287 -4.9712 0.0051 17 6 9.7936 -4.9712 0.0062 18 1 10.2172 -4.0636 -0.4237 19 6 10.4087 -5.3558 1.3623 20 6 10.3580 -6.8171 0.8800 21 1 9.4223 -7.3222 1.1195 22 6 11.5726 -7.6240 1.2603 23 6 12.8257 -7.0404 1.2345 24 6 13.9402 -7.7780 1.5877 25 6 13.8041 -9.1029 1.9569 26 6 12.5505 -9.6897 1.9781 27 9 12.4163 -10.9848 2.3384 28 6 11.4341 -8.9483 1.6291 29 6 10.4100 -6.2640 -0.5540 30 1 -0.4849 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8911 32 1 3.8752 -0.6805 -0.8888 33 1 3.6585 -3.1511 -0.8875 34 1 3.6578 -3.1498 0.8925 35 1 5.9715 -1.7967 0.0019 36 1 7.8437 -5.8112 0.0059 37 1 11.4211 -4.9781 1.5053 38 1 9.7560 -5.1523 2.2112 39 1 12.9335 -6.0063 0.9421 40 1 14.9182 -7.3199 1.5710 41 1 14.6755 -9.6802 2.2285 42 1 10.4555 -9.4051 1.6456 43 1 9.7585 -6.7926 -1.2497 44 1 11.4223 -6.1348 -0.9370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347566975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:36 Heat of formation + Delta-G solvation = -77.615583 kcal Electronic energy + Delta-G solvation = -26649.604484 eV Core-core repulsion = 22481.750692 eV Total energy + Delta-G solvation = -4167.853792 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.30826 -41.11530 -40.11308 -38.73035 -37.80775 -35.36740 -33.76532 -32.80962 -31.59412 -30.72377 -30.31114 -26.59434 -26.22906 -25.45311 -23.70941 -23.23072 -22.06095 -20.93557 -20.45338 -19.70430 -18.36975 -17.83579 -17.08102 -16.84079 -16.63744 -16.56799 -16.02132 -15.90279 -15.80176 -15.30251 -14.92035 -14.63324 -14.33405 -14.20382 -14.13498 -13.67566 -13.63616 -13.30959 -13.16135 -12.97271 -12.63411 -12.42642 -12.34252 -12.24618 -11.65852 -11.52782 -11.28934 -11.27130 -11.19472 -10.75678 -10.46663 -10.33127 -9.97903 -9.51629 -9.46775 -9.42113 -9.33905 -9.10523 -8.81163 -8.63144 -6.14027 -4.14867 0.65288 0.71375 1.47069 2.36104 3.04463 3.25115 3.28230 3.33289 3.34866 3.69384 3.75438 3.92688 4.12505 4.20640 4.32121 4.36146 4.44323 4.53840 4.59047 4.61373 4.70365 4.88403 5.15957 5.19088 5.19876 5.32604 5.36833 5.39736 5.53993 5.58239 5.62218 5.66732 5.82430 5.93818 6.00995 6.07597 6.15340 6.40486 6.44027 6.47505 6.88973 7.06176 7.16122 7.51168 7.60538 7.79616 8.16216 8.39897 8.89199 9.45863 10.98695 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.001639 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.540586 B =17076.515718 C =17618.334095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.127 3.873 11 N -0.690 5.690 12 C 0.498 3.502 13 O -0.529 6.529 14 C 0.512 3.488 15 O -0.518 6.518 16 N -0.689 5.689 17 C 0.118 3.882 18 H 0.109 0.891 19 C -0.143 4.143 20 C -0.079 4.079 21 H 0.103 0.897 22 C -0.038 4.038 23 C -0.128 4.128 24 C -0.088 4.088 25 C -0.161 4.161 26 C 0.100 3.900 27 F -0.141 7.141 28 C -0.150 4.150 29 C -0.134 4.134 30 H 0.265 0.735 31 H 0.025 0.975 32 H 0.020 0.980 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.414 0.586 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.693 -16.284 1.883 34.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.005 3.995 11 N -0.341 5.341 12 C 0.278 3.722 13 O -0.406 6.406 14 C 0.294 3.706 15 O -0.393 6.393 16 N -0.343 5.343 17 C 0.013 3.987 18 H 0.127 0.873 19 C -0.181 4.181 20 C -0.097 4.097 21 H 0.121 0.879 22 C -0.038 4.038 23 C -0.146 4.146 24 C -0.106 4.106 25 C -0.179 4.179 26 C 0.081 3.919 27 F -0.119 7.119 28 C -0.169 4.169 29 C -0.172 4.172 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.245 0.755 36 H 0.250 0.750 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.100 0.900 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 30.478 -16.184 1.893 34.560 hybrid contribution 0.321 0.543 0.138 0.646 sum 30.799 -15.641 2.031 34.603 Atomic orbital electron populations 1.69898 1.06289 1.27132 1.50165 1.24986 0.94768 0.99166 0.94239 0.86767 0.80337 0.83494 0.78617 1.20156 1.21211 1.18959 1.20873 0.88426 0.94962 1.52064 0.90535 1.19826 0.98124 0.90953 0.97249 1.21729 0.74654 1.00881 1.02209 1.46216 1.09559 1.08012 1.70320 1.19934 0.87611 0.85281 0.79405 1.90751 1.69626 1.31000 1.49226 1.20457 0.89020 0.84234 0.76938 1.90753 1.70021 1.31028 1.47498 1.45430 1.06224 1.09131 1.73481 1.21905 0.79628 0.99953 0.97236 0.87299 1.23612 1.02318 0.94103 0.98109 1.21722 0.96155 0.94869 0.96963 0.87871 1.19555 0.94816 0.92816 0.96638 1.21117 0.91764 1.00634 1.01083 1.21018 0.99229 0.93064 0.97265 1.21167 0.96205 0.96560 1.04012 1.17729 0.94616 0.78929 1.00664 1.91511 1.96729 1.34342 1.89334 1.21094 0.98382 0.94603 1.02839 1.23418 1.02426 0.95497 0.95812 0.92491 0.95711 0.96135 0.91221 0.91199 0.75547 0.74977 0.88399 0.90262 0.85059 0.84924 0.84862 0.84673 0.90016 0.88086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 20.95 27.47 -169.99 -4.67 16.28 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -14.44 9.66 -34.44 -0.33 -14.77 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.65 16 10 C 0.13 2.49 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -11.49 5.55 -60.72 -0.34 -11.83 16 12 C 0.50 7.87 7.89 -11.58 -0.09 7.78 16 13 O -0.53 -9.35 16.48 5.50 0.09 -9.26 16 14 C 0.51 6.83 7.89 -11.58 -0.09 6.74 16 15 O -0.52 -7.84 16.10 5.50 0.09 -7.75 16 16 N -0.69 -6.75 5.26 -53.44 -0.28 -7.03 16 17 C 0.12 0.88 4.30 -67.12 -0.29 0.59 16 18 H 0.11 0.91 7.50 -51.93 -0.39 0.52 16 19 C -0.14 -0.91 7.27 -25.82 -0.19 -1.10 16 20 C -0.08 -0.45 3.86 -90.86 -0.35 -0.80 16 21 H 0.10 0.58 8.09 -51.93 -0.42 0.16 16 22 C -0.04 -0.24 5.29 -104.64 -0.55 -0.79 16 23 C -0.13 -0.68 8.60 -39.58 -0.34 -1.02 16 24 C -0.09 -0.45 10.04 -39.59 -0.40 -0.85 16 25 C -0.16 -1.00 10.03 -39.52 -0.40 -1.40 16 26 C 0.10 0.78 7.30 -39.42 -0.29 0.49 16 27 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 28 C -0.15 -1.07 9.69 -39.51 -0.38 -1.45 16 29 C -0.13 -0.71 7.29 -25.92 -0.19 -0.90 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.02 0.55 7.20 -51.93 -0.37 0.18 16 32 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.41 6.30 7.94 -40.82 -0.32 5.98 16 36 H 0.41 3.65 8.18 -40.82 -0.33 3.31 16 37 H 0.10 0.49 6.35 -51.93 -0.33 0.17 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.13 0.48 6.69 -52.49 -0.35 0.13 16 40 H 0.13 0.38 8.06 -52.48 -0.42 -0.04 16 41 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.14 0.83 8.05 -52.48 -0.42 0.41 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.43 7.72 -51.93 -0.40 0.02 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -32.35 377.45 -8.59 -40.95 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.86 Total: 4.13 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -4.13 Total: -3.75 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.16 Total: -45.06 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: 0.18 Total: -17.01 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.35 -8.59 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347566975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.669 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds