Wall clock time and date at job start Tue Mar 31 2020 18:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48506 * 109.46750 * 269.99375 * 3 2 1 5 5 H 1.48496 * 109.47475 * 29.99252 * 3 2 1 6 6 H 1.48499 * 109.47053 * 149.99747 * 3 2 1 7 7 C 1.37883 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00009 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99615 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46603 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47120 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00052 * 179.97438 * 11 10 9 13 13 O 1.21347 * 120.00124 * 0.02562 * 12 11 10 14 14 C 1.49457 * 119.99601 * 180.02562 * 12 11 10 15 15 O 1.21347 * 120.00275 * 359.97438 * 14 12 11 16 16 N 1.34780 * 119.99509 * 180.02562 * 14 12 11 17 17 C 1.46497 * 119.99653 * 180.02562 * 16 14 12 18 18 H 1.09002 * 112.84935 * 334.66222 * 17 16 14 19 19 C 1.53786 * 113.61643 * 105.85894 * 17 16 14 20 20 C 1.53962 * 87.01719 * 89.22773 * 19 17 16 21 21 H 1.08997 * 113.53543 * 270.80998 * 20 19 17 22 22 C 1.50701 * 113.74004 * 139.94532 * 20 19 17 23 23 C 1.38257 * 119.98765 * 322.12459 * 22 20 19 24 24 C 1.38230 * 120.05129 * 179.76618 * 23 22 20 25 25 C 1.38215 * 120.02101 * 0.51288 * 24 23 22 26 26 C 1.38430 * 119.97685 * 359.74089 * 25 24 23 27 27 F 1.35099 * 120.02739 * 179.97438 * 26 25 24 28 28 C 1.38171 * 119.98296 * 142.40435 * 22 20 19 29 29 C 1.53781 * 113.61305 * 203.46742 * 17 16 14 30 30 H 0.96998 * 119.99443 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47537 * 60.00319 * 9 7 2 32 32 H 1.08997 * 109.47109 * 299.99832 * 9 7 2 33 33 H 1.09001 * 109.47343 * 60.00449 * 10 9 7 34 34 H 1.08997 * 109.47279 * 299.99762 * 10 9 7 35 35 H 0.96999 * 119.99718 * 0.02562 * 11 10 9 36 36 H 0.96995 * 120.00200 * 359.97438 * 16 14 12 37 37 H 1.08993 * 113.61491 * 203.74894 * 19 17 16 38 38 H 1.09000 * 113.61138 * 334.65232 * 19 17 16 39 39 H 1.08002 * 119.97442 * 0.02562 * 23 22 20 40 40 H 1.08005 * 119.98609 * 180.25398 * 24 23 22 41 41 H 1.07999 * 120.00976 * 179.71899 * 25 24 23 42 42 H 1.08005 * 120.01812 * 359.95046 * 28 22 20 43 43 H 1.09001 * 113.61695 * 25.34675 * 29 17 16 44 44 H 1.08996 * 113.61580 * 156.16953 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6366 0.0023 11 7 5.4865 -2.6367 0.0022 12 6 6.1603 -3.8040 0.0037 13 8 5.5535 -4.8548 0.0046 14 6 7.6549 -3.8039 0.0042 15 8 8.2616 -2.7531 0.0029 16 7 8.3287 -4.9712 0.0051 17 6 9.7936 -4.9712 0.0062 18 1 10.2172 -4.0636 -0.4237 19 6 10.4087 -5.3558 1.3623 20 6 10.3580 -6.8171 0.8800 21 1 9.4223 -7.3222 1.1195 22 6 11.5726 -7.6240 1.2603 23 6 12.8257 -7.0404 1.2345 24 6 13.9402 -7.7780 1.5877 25 6 13.8041 -9.1029 1.9569 26 6 12.5505 -9.6897 1.9781 27 9 12.4163 -10.9848 2.3384 28 6 11.4341 -8.9483 1.6291 29 6 10.4100 -6.2640 -0.5540 30 1 -0.4849 0.8401 -0.0004 31 1 3.8745 -0.6801 0.8911 32 1 3.8752 -0.6805 -0.8888 33 1 3.6585 -3.1511 -0.8875 34 1 3.6578 -3.1498 0.8925 35 1 5.9715 -1.7967 0.0019 36 1 7.8437 -5.8112 0.0059 37 1 11.4211 -4.9781 1.5053 38 1 9.7560 -5.1523 2.2112 39 1 12.9335 -6.0063 0.9421 40 1 14.9182 -7.3199 1.5710 41 1 14.6755 -9.6802 2.2285 42 1 10.4555 -9.4051 1.6456 43 1 9.7585 -6.7926 -1.2497 44 1 11.4223 -6.1348 -0.9370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347566975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:35 Heat of formation + Delta-G solvation = -98.938634 kcal Electronic energy + Delta-G solvation = -26650.529121 eV Core-core repulsion = 22481.750692 eV Total energy + Delta-G solvation = -4168.778429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.90303 -41.95758 -40.95468 -39.65373 -38.60156 -36.88446 -34.96844 -34.44410 -32.13052 -32.07668 -31.20080 -27.85965 -26.69440 -26.49503 -24.90518 -23.70978 -22.76463 -22.57517 -21.60379 -20.35349 -19.47070 -19.02052 -18.41649 -17.77649 -17.32854 -17.11242 -17.02438 -16.71848 -16.60720 -16.27381 -16.21421 -15.91280 -15.57322 -15.32716 -14.90120 -14.65627 -14.58376 -14.51743 -14.09901 -13.83787 -13.45584 -13.39308 -13.07472 -12.96985 -12.87875 -12.78021 -12.67551 -12.22604 -12.19430 -11.78182 -11.76262 -11.70434 -11.51162 -11.26764 -10.78976 -10.71952 -10.29793 -10.21252 -9.87346 -9.57650 -8.30176 -6.37073 0.19276 0.26739 0.31598 1.29206 1.39885 1.41548 1.52705 2.10758 2.36508 2.60625 2.63254 3.05148 3.25305 3.41009 3.42698 3.66864 3.70186 3.88659 3.97522 4.12218 4.18566 4.26450 4.29272 4.38871 4.45486 4.61429 4.72384 4.79621 4.82925 4.85801 4.96128 4.98922 5.04573 5.09771 5.15442 5.21099 5.29117 5.37196 5.39084 5.42939 5.58840 5.63348 5.92936 5.97034 6.20536 6.35754 6.68342 6.74794 6.92928 7.27623 8.86062 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.001639 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.540586 B =17076.515718 C =17618.334095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.537 4.537 8 H 0.035 0.965 9 C -0.017 4.017 10 C 0.141 3.859 11 N -0.688 5.688 12 C 0.499 3.501 13 O -0.550 6.550 14 C 0.520 3.480 15 O -0.536 6.536 16 N -0.673 5.673 17 C 0.108 3.892 18 H 0.106 0.894 19 C -0.138 4.138 20 C -0.075 4.075 21 H 0.100 0.900 22 C -0.043 4.043 23 C -0.126 4.126 24 C -0.087 4.087 25 C -0.166 4.166 26 C 0.073 3.927 27 F -0.155 7.155 28 C -0.163 4.163 29 C -0.120 4.120 30 H 0.268 0.732 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.418 0.582 36 H 0.419 0.581 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.153 0.847 40 H 0.159 0.841 41 H 0.145 0.855 42 H 0.135 0.865 43 H 0.084 0.916 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.158 -15.188 1.621 37.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.575 4.575 8 H 0.054 0.946 9 C -0.055 4.055 10 C 0.019 3.981 11 N -0.340 5.340 12 C 0.280 3.720 13 O -0.428 6.428 14 C 0.300 3.700 15 O -0.413 6.413 16 N -0.326 5.326 17 C 0.003 3.997 18 H 0.124 0.876 19 C -0.176 4.176 20 C -0.093 4.093 21 H 0.119 0.881 22 C -0.043 4.043 23 C -0.144 4.144 24 C -0.104 4.104 25 C -0.185 4.185 26 C 0.054 3.946 27 F -0.134 7.134 28 C -0.182 4.182 29 C -0.158 4.158 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.255 0.745 36 H 0.257 0.743 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.171 0.829 40 H 0.177 0.823 41 H 0.163 0.837 42 H 0.153 0.847 43 H 0.102 0.898 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 33.992 -15.134 1.632 37.245 hybrid contribution -0.761 0.072 0.226 0.797 sum 33.231 -15.062 1.858 36.533 Atomic orbital electron populations 1.70059 1.08411 1.28373 1.51882 1.25996 0.95629 1.03590 0.93752 0.85624 0.79651 0.77855 0.79306 1.19077 1.21180 1.16363 1.21208 0.91238 0.93561 1.51541 0.94628 1.19693 0.94727 0.92908 0.98179 1.21280 0.76618 0.98942 1.01300 1.45984 1.08207 1.08981 1.70799 1.20399 0.88956 0.84457 0.78223 1.90742 1.70497 1.31682 1.49919 1.19873 0.87510 0.85012 0.77564 1.90752 1.69751 1.31727 1.49076 1.45445 1.07450 1.08193 1.71468 1.22152 0.77825 1.01026 0.98674 0.87639 1.23625 1.02868 0.94368 0.96719 1.21678 0.96018 0.94429 0.97210 0.88142 1.19623 0.95454 0.92403 0.96819 1.21418 0.91287 1.01608 1.00109 1.21360 1.00481 0.92462 0.96125 1.21420 0.95974 0.97362 1.03719 1.18040 0.95694 0.78687 1.02219 1.91468 1.96863 1.35348 1.89706 1.21215 0.98369 0.95271 1.03337 1.23407 1.03176 0.93648 0.95549 0.92325 0.94600 0.94689 0.92236 0.92281 0.74524 0.74349 0.86552 0.91602 0.82898 0.82295 0.83722 0.84692 0.89778 0.86228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.36 13.96 21.45 0.30 -58.06 16 2 C 0.01 0.45 5.47 84.66 0.46 0.91 16 3 Si 0.95 42.40 27.47 68.60 1.88 44.28 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.24 -9.68 6.54 99.48 0.65 -9.03 16 7 C -0.54 -30.06 9.66 25.60 0.25 -29.81 16 8 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 9 C -0.02 -0.76 4.16 29.85 0.12 -0.64 16 10 C 0.14 5.52 5.61 86.38 0.48 6.01 16 11 N -0.69 -22.12 5.55 -464.39 -2.58 -24.69 16 12 C 0.50 15.27 7.89 87.27 0.69 15.96 16 13 O -0.55 -19.20 16.48 -3.24 -0.05 -19.25 16 14 C 0.52 13.07 7.89 87.27 0.69 13.76 16 15 O -0.54 -15.23 16.10 -3.24 -0.05 -15.28 16 16 N -0.67 -12.01 5.26 -441.36 -2.32 -14.34 16 17 C 0.11 1.35 4.30 45.52 0.20 1.54 16 18 H 0.11 1.48 7.50 -2.39 -0.02 1.47 16 19 C -0.14 -1.41 7.27 31.18 0.23 -1.18 16 20 C -0.08 -0.69 3.86 -10.95 -0.04 -0.73 16 21 H 0.10 0.98 8.09 -2.39 -0.02 0.96 16 22 C -0.04 -0.45 5.29 -19.88 -0.11 -0.55 16 23 C -0.13 -0.96 8.60 22.27 0.19 -0.77 16 24 C -0.09 -0.64 10.04 22.26 0.22 -0.42 16 25 C -0.17 -1.83 10.03 22.31 0.22 -1.61 16 26 C 0.07 1.10 7.30 22.37 0.16 1.27 16 27 F -0.16 -2.87 17.27 44.97 0.78 -2.09 16 28 C -0.16 -2.22 9.69 22.31 0.22 -2.00 16 29 C -0.12 -0.93 7.29 31.12 0.23 -0.71 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.04 1.51 7.20 -2.39 -0.02 1.49 16 32 H 0.03 1.45 7.57 -2.39 -0.02 1.43 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.42 12.07 7.94 -92.71 -0.74 11.33 16 36 H 0.42 6.74 8.18 -92.71 -0.76 5.99 16 37 H 0.12 0.77 6.35 -2.39 -0.02 0.76 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.15 0.46 6.69 -2.91 -0.02 0.44 16 40 H 0.16 0.31 8.06 -2.91 -0.02 0.28 16 41 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.14 1.69 8.05 -2.91 -0.02 1.66 16 43 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.12 0.55 7.72 -2.39 -0.02 0.53 16 Total: -1.00 -71.12 377.45 1.68 -69.44 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.50 Total: 18.97 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 4.22 Total: 1.03 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -4.60 Total: -97.09 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.11 Total: -34.53 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.09 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.28 kcal Total: -71.12 1.68 -69.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347566975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.495 kcal (2) G-P(sol) polarization free energy of solvation -71.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds