Wall clock time and date at job start Tue Mar 31 2020 18:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31218 * 1 3 3 Si 1.86797 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47189 * 269.99895 * 3 2 1 5 5 H 1.48493 * 109.47387 * 29.99812 * 3 2 1 6 6 H 1.48504 * 109.47256 * 150.00049 * 3 2 1 7 7 C 1.39257 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00286 * 191.65435 * 7 2 1 9 9 N 1.36577 * 119.99908 * 11.65475 * 7 2 1 10 10 C 1.34777 * 119.99890 * 219.27189 * 9 7 2 11 11 O 1.21509 * 119.99914 * 185.03163 * 10 9 7 12 12 C 1.48552 * 120.00255 * 5.03623 * 10 9 7 13 13 N 1.32865 * 119.99179 * 6.16584 * 12 10 9 14 14 C 1.32985 * 120.00061 * 179.97438 * 13 12 10 15 15 N 1.38028 * 120.00460 * 179.97438 * 14 13 12 16 16 N 1.32886 * 119.99490 * 0.25771 * 14 13 12 17 17 C 1.32861 * 119.99499 * 359.51094 * 16 14 13 18 18 N 1.38025 * 120.00222 * 180.20981 * 17 16 14 19 19 C 1.47010 * 110.99665 * 123.91038 * 18 17 16 20 20 C 1.53102 * 109.25966 * 177.61121 * 19 18 17 21 21 O 1.43016 * 109.25839 * 56.84566 * 20 19 18 22 22 C 1.43013 * 113.73858 * 301.33455 * 21 20 19 23 23 C 1.47021 * 111.00036 * 0.27796 * 18 17 16 24 24 N 1.32826 * 120.00138 * 186.19135 * 12 10 9 25 25 C 1.46498 * 119.99960 * 39.27535 * 9 7 2 26 26 C 1.53002 * 117.49724 * 134.31339 * 25 9 7 27 27 C 1.52994 * 117.50214 * 65.65080 * 25 9 7 28 28 H 0.97000 * 120.00053 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99590 * 0.02562 * 15 14 13 30 30 H 0.96993 * 120.00537 * 179.72871 * 15 14 13 31 31 H 1.08997 * 109.50933 * 297.53949 * 19 18 17 32 32 H 1.08997 * 109.51125 * 57.67879 * 19 18 17 33 33 H 1.09001 * 109.50455 * 296.91562 * 20 19 18 34 34 H 1.08999 * 109.54410 * 176.80633 * 20 19 18 35 35 H 1.09006 * 109.50805 * 298.73513 * 22 21 20 36 36 H 1.08996 * 109.54321 * 178.62784 * 22 21 20 37 37 H 1.08996 * 109.50111 * 302.32402 * 23 18 17 38 38 H 1.09000 * 109.50469 * 62.45436 * 23 18 17 39 39 H 1.09007 * 115.54857 * 279.97755 * 25 9 7 40 40 H 1.08994 * 117.50229 * 0.02562 * 26 25 9 41 41 H 1.09001 * 117.49487 * 145.01984 * 26 25 9 42 42 H 1.08997 * 117.50089 * 214.97655 * 27 25 9 43 43 H 1.09001 * 117.49960 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3122 0.0000 0.0000 3 14 2.2462 1.6177 0.0000 4 1 2.4938 2.0463 -1.4001 5 1 1.4438 2.6527 0.7000 6 1 3.5438 1.4401 0.7000 7 6 2.0084 -1.2060 0.0005 8 1 3.0717 -1.2156 0.1895 9 7 1.3466 -2.3767 -0.2379 10 6 1.6653 -3.4851 0.4596 11 8 1.1419 -4.5468 0.1855 12 6 2.6563 -3.4087 1.5636 13 7 3.1367 -2.2299 1.9445 14 6 4.0235 -2.1613 2.9331 15 7 4.5230 -0.9368 3.3285 16 7 4.4330 -3.2721 3.5366 17 6 3.9490 -4.4503 3.1587 18 7 4.3710 -5.6039 3.7883 19 6 3.2300 -6.3545 4.3324 20 6 3.7362 -7.6522 4.9678 21 8 4.7063 -7.3392 5.9709 22 6 5.8315 -6.6087 5.4756 23 6 5.3467 -5.3004 4.8454 24 7 3.0625 -4.5187 2.1695 25 6 0.2904 -2.4277 -1.2518 26 6 0.3037 -3.6065 -2.2270 27 6 0.6995 -2.2088 -2.7097 28 1 -0.4850 0.8400 -0.0004 29 1 4.2269 -0.1263 2.8854 30 1 5.1668 -0.8863 4.0522 31 1 2.7250 -5.7524 5.0876 32 1 2.5330 -6.5908 3.5284 33 1 4.1938 -8.2782 4.2017 34 1 2.9013 -8.1854 5.4226 35 1 6.3501 -7.2043 4.7242 36 1 6.5123 -6.3864 6.2972 37 1 6.1946 -4.7671 4.4157 38 1 4.8754 -4.6814 5.6088 39 1 -0.6808 -2.0445 -0.9386 40 1 1.0979 -4.3444 -2.1140 41 1 -0.6588 -3.9985 -2.5558 42 1 -0.0027 -1.6820 -3.3558 43 1 1.7545 -2.0265 -2.9145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349521622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:51 Heat of formation + Delta-G solvation = 73.022586 kcal Electronic energy + Delta-G solvation = -29680.160918 eV Core-core repulsion = 25571.052000 eV Total energy + Delta-G solvation = -4109.108918 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.154 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.28031 -39.59297 -38.64382 -36.39049 -35.84231 -34.71429 -33.75675 -32.42089 -31.65539 -31.12936 -30.83068 -27.64005 -25.59206 -24.90326 -24.03547 -22.94634 -21.67823 -21.39670 -20.70460 -19.42750 -18.54698 -18.31010 -17.07199 -16.27751 -16.11476 -15.77163 -15.57284 -15.37696 -15.35363 -15.15534 -14.62097 -14.57419 -14.34506 -14.20826 -13.98483 -13.53450 -13.14053 -12.88020 -12.51361 -12.25435 -11.74497 -11.54513 -11.52957 -11.33627 -11.20165 -10.94613 -10.87782 -10.66076 -10.49760 -10.40534 -9.89388 -9.82508 -9.35679 -9.29335 -9.09698 -8.90556 -8.67746 -8.42794 -8.37245 -7.59311 -6.43061 -4.01447 1.19421 1.66614 2.99764 3.06986 3.14022 3.16771 3.43048 3.68399 3.70205 3.91216 4.11733 4.50839 4.62307 4.72297 4.84044 4.87207 4.95434 5.00875 5.05602 5.14883 5.21433 5.46049 5.49452 5.52300 5.74788 5.80968 5.83783 5.90946 5.94876 6.14637 6.34468 6.38460 6.45637 6.67715 6.80231 6.94160 6.99742 7.00809 7.23516 7.26848 7.46444 7.54463 7.78547 7.88705 8.39210 8.89714 9.03362 9.35898 9.77084 10.59918 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.003954 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.914215 B = 7079.714439 C = 8558.532870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.048 3.952 3 Si 0.923 3.077 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.268 1.268 7 C -0.291 4.291 8 H 0.112 0.888 9 N -0.377 5.377 10 C 0.510 3.490 11 O -0.569 6.569 12 C 0.405 3.595 13 N -0.543 5.543 14 C 0.598 3.402 15 N -0.811 5.811 16 N -0.647 5.647 17 C 0.550 3.450 18 N -0.455 5.455 19 C 0.030 3.970 20 C 0.065 3.935 21 O -0.386 6.386 22 C 0.062 3.938 23 C 0.035 3.965 24 N -0.566 5.566 25 C 0.116 3.884 26 C -0.181 4.181 27 C -0.181 4.181 28 H 0.270 0.730 29 H 0.418 0.582 30 H 0.410 0.590 31 H 0.052 0.948 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.462 -4.251 7.479 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.160 4.160 3 Si 0.749 3.251 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.422 4.422 8 H 0.129 0.871 9 N -0.094 5.094 10 C 0.296 3.704 11 O -0.452 6.452 12 C 0.128 3.872 13 N -0.275 5.275 14 C 0.231 3.769 15 N -0.361 5.361 16 N -0.386 5.386 17 C 0.183 3.817 18 N -0.176 5.176 19 C -0.097 4.097 20 C -0.012 4.012 21 O -0.305 6.305 22 C -0.015 4.015 23 C -0.093 4.093 24 N -0.295 5.295 25 C 0.012 3.988 26 C -0.219 4.219 27 C -0.219 4.219 28 H 0.081 0.919 29 H 0.251 0.749 30 H 0.240 0.760 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.142 0.858 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.208 -5.061 7.158 12.009 hybrid contribution 0.399 2.129 0.423 2.207 sum 8.607 -2.932 7.581 11.838 Atomic orbital electron populations 1.69802 1.06415 1.27959 1.44858 1.25491 0.95134 0.99859 0.95519 0.86013 0.79431 0.81120 0.78512 1.20318 1.20986 1.19290 1.19920 0.93720 0.82263 1.46248 0.87074 1.42832 1.30391 1.08348 1.27790 1.17306 0.84705 0.85598 0.82805 1.90657 1.56389 1.29393 1.68726 1.23288 0.89795 0.81799 0.92359 1.69919 1.14164 1.28349 1.15073 1.19636 0.86037 0.86182 0.85074 1.41658 1.48968 1.04244 1.41214 1.68183 1.36797 0.98420 1.35163 1.20618 0.85954 0.86760 0.88334 1.58452 1.14513 1.15821 1.28833 1.22911 0.91512 0.95127 1.00141 1.22739 0.92351 0.94839 0.91237 1.87981 1.32482 1.74934 1.35086 1.22770 0.88506 0.91144 0.99111 1.22695 0.96301 0.97775 0.92483 1.68581 1.17153 1.32627 1.11168 1.21492 0.93442 1.00115 0.83765 1.23176 1.02712 0.91868 1.04163 1.23065 1.01593 0.99093 0.98125 0.91920 0.74943 0.76002 0.92921 0.87005 0.91656 0.87622 0.92093 0.87902 0.88458 0.92011 0.85771 0.88570 0.89539 0.89536 0.89310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.52 11.57 55.51 0.64 -20.88 16 2 C 0.05 1.15 5.25 -17.44 -0.09 1.06 16 3 Si 0.92 18.55 29.57 -169.99 -5.03 13.53 16 4 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 7 C -0.29 -7.18 7.41 -15.06 -0.11 -7.30 16 8 H 0.11 2.74 6.12 -52.49 -0.32 2.42 16 9 N -0.38 -9.48 2.83 -108.57 -0.31 -9.78 16 10 C 0.51 13.17 7.53 -12.00 -0.09 13.08 16 11 O -0.57 -15.43 15.02 5.36 0.08 -15.35 16 12 C 0.41 9.70 7.51 -156.40 -1.18 8.53 16 13 N -0.54 -12.02 6.71 -11.91 -0.08 -12.10 16 14 C 0.60 11.26 8.76 -322.21 -2.82 8.44 16 15 N -0.81 -11.43 9.05 29.84 0.27 -11.16 16 16 N -0.65 -11.75 8.88 -14.78 -0.13 -11.88 16 17 C 0.55 10.57 7.19 -322.22 -2.32 8.26 16 18 N -0.45 -7.15 4.78 -174.96 -0.84 -7.99 16 19 C 0.03 0.42 5.50 -3.71 -0.02 0.40 16 20 C 0.07 0.72 7.01 37.21 0.26 0.98 16 21 O -0.39 -4.57 10.83 -35.23 -0.38 -4.95 16 22 C 0.06 0.63 7.01 37.21 0.26 0.89 16 23 C 0.04 0.44 4.82 -3.71 -0.02 0.42 16 24 N -0.57 -12.66 9.62 -11.91 -0.11 -12.78 16 25 C 0.12 2.70 4.59 -67.93 -0.31 2.39 16 26 C -0.18 -3.73 9.20 -26.69 -0.25 -3.98 16 27 C -0.18 -3.63 10.34 -26.69 -0.28 -3.91 16 28 H 0.27 6.45 8.30 -40.82 -0.34 6.12 16 29 H 0.42 5.74 8.95 -40.82 -0.37 5.38 16 30 H 0.41 4.44 8.95 -40.82 -0.37 4.07 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.11 1.72 7.70 -51.93 -0.40 1.32 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 1.21 7.85 -51.93 -0.41 0.80 16 38 H 0.06 0.82 8.03 -51.93 -0.42 0.40 16 39 H 0.12 3.08 7.18 -51.93 -0.37 2.71 16 40 H 0.10 2.13 7.11 -51.93 -0.37 1.76 16 41 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -30.65 357.61 -12.99 -43.64 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -5.54 Total: 15.07 kcal Atomic # 6 Polarization: 36.21 SS G_CDS: -6.96 Total: 29.25 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -0.56 Total: -86.58 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.30 Total: -20.30 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.65 -12.99 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349521622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.663 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds