Wall clock time and date at job start Tue Mar 31 2020 18:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31218 * 1 3 3 Si 1.86797 * 120.00273 * 2 1 4 4 H 1.48501 * 109.47189 * 269.99895 * 3 2 1 5 5 H 1.48493 * 109.47387 * 29.99812 * 3 2 1 6 6 H 1.48504 * 109.47256 * 150.00049 * 3 2 1 7 7 C 1.39257 * 119.99883 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00286 * 191.65435 * 7 2 1 9 9 N 1.36577 * 119.99908 * 11.65475 * 7 2 1 10 10 C 1.34777 * 119.99890 * 219.27189 * 9 7 2 11 11 O 1.21509 * 119.99914 * 185.03163 * 10 9 7 12 12 C 1.48552 * 120.00255 * 5.03623 * 10 9 7 13 13 N 1.32865 * 119.99179 * 6.16584 * 12 10 9 14 14 C 1.32985 * 120.00061 * 179.97438 * 13 12 10 15 15 N 1.38028 * 120.00460 * 179.97438 * 14 13 12 16 16 N 1.32886 * 119.99490 * 0.25771 * 14 13 12 17 17 C 1.32861 * 119.99499 * 359.51094 * 16 14 13 18 18 N 1.38025 * 120.00222 * 180.20981 * 17 16 14 19 19 C 1.47010 * 110.99665 * 123.91038 * 18 17 16 20 20 C 1.53102 * 109.25966 * 177.61121 * 19 18 17 21 21 O 1.43016 * 109.25839 * 56.84566 * 20 19 18 22 22 C 1.43013 * 113.73858 * 301.33455 * 21 20 19 23 23 C 1.47021 * 111.00036 * 0.27796 * 18 17 16 24 24 N 1.32826 * 120.00138 * 186.19135 * 12 10 9 25 25 C 1.46498 * 119.99960 * 39.27535 * 9 7 2 26 26 C 1.53002 * 117.49724 * 134.31339 * 25 9 7 27 27 C 1.52994 * 117.50214 * 65.65080 * 25 9 7 28 28 H 0.97000 * 120.00053 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99590 * 0.02562 * 15 14 13 30 30 H 0.96993 * 120.00537 * 179.72871 * 15 14 13 31 31 H 1.08997 * 109.50933 * 297.53949 * 19 18 17 32 32 H 1.08997 * 109.51125 * 57.67879 * 19 18 17 33 33 H 1.09001 * 109.50455 * 296.91562 * 20 19 18 34 34 H 1.08999 * 109.54410 * 176.80633 * 20 19 18 35 35 H 1.09006 * 109.50805 * 298.73513 * 22 21 20 36 36 H 1.08996 * 109.54321 * 178.62784 * 22 21 20 37 37 H 1.08996 * 109.50111 * 302.32402 * 23 18 17 38 38 H 1.09000 * 109.50469 * 62.45436 * 23 18 17 39 39 H 1.09007 * 115.54857 * 279.97755 * 25 9 7 40 40 H 1.08994 * 117.50229 * 0.02562 * 26 25 9 41 41 H 1.09001 * 117.49487 * 145.01984 * 26 25 9 42 42 H 1.08997 * 117.50089 * 214.97655 * 27 25 9 43 43 H 1.09001 * 117.49960 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3122 0.0000 0.0000 3 14 2.2462 1.6177 0.0000 4 1 2.4938 2.0463 -1.4001 5 1 1.4438 2.6527 0.7000 6 1 3.5438 1.4401 0.7000 7 6 2.0084 -1.2060 0.0005 8 1 3.0717 -1.2156 0.1895 9 7 1.3466 -2.3767 -0.2379 10 6 1.6653 -3.4851 0.4596 11 8 1.1419 -4.5468 0.1855 12 6 2.6563 -3.4087 1.5636 13 7 3.1367 -2.2299 1.9445 14 6 4.0235 -2.1613 2.9331 15 7 4.5230 -0.9368 3.3285 16 7 4.4330 -3.2721 3.5366 17 6 3.9490 -4.4503 3.1587 18 7 4.3710 -5.6039 3.7883 19 6 3.2300 -6.3545 4.3324 20 6 3.7362 -7.6522 4.9678 21 8 4.7063 -7.3392 5.9709 22 6 5.8315 -6.6087 5.4756 23 6 5.3467 -5.3004 4.8454 24 7 3.0625 -4.5187 2.1695 25 6 0.2904 -2.4277 -1.2518 26 6 0.3037 -3.6065 -2.2270 27 6 0.6995 -2.2088 -2.7097 28 1 -0.4850 0.8400 -0.0004 29 1 4.2269 -0.1263 2.8854 30 1 5.1668 -0.8863 4.0522 31 1 2.7250 -5.7524 5.0876 32 1 2.5330 -6.5908 3.5284 33 1 4.1938 -8.2782 4.2017 34 1 2.9013 -8.1854 5.4226 35 1 6.3501 -7.2043 4.7242 36 1 6.5123 -6.3864 6.2972 37 1 6.1946 -4.7671 4.4157 38 1 4.8754 -4.6814 5.6088 39 1 -0.6808 -2.0445 -0.9386 40 1 1.0979 -4.3444 -2.1140 41 1 -0.6588 -3.9985 -2.5558 42 1 -0.0027 -1.6820 -3.3558 43 1 1.7545 -2.0265 -2.9145 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349521622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:50 Heat of formation + Delta-G solvation = 54.842448 kcal Electronic energy + Delta-G solvation = -29680.949268 eV Core-core repulsion = 25571.052000 eV Total energy + Delta-G solvation = -4109.897268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.154 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.78711 -40.85846 -40.30825 -37.64312 -37.56216 -36.23850 -35.49959 -33.92705 -33.15301 -32.64366 -32.09349 -28.79121 -27.28494 -26.68207 -25.14765 -24.30061 -23.34100 -23.02871 -21.86491 -21.15217 -20.09067 -19.85895 -18.58310 -17.53397 -17.49702 -17.15786 -17.02913 -16.93980 -16.76644 -16.17092 -16.06717 -15.92031 -15.79644 -15.65572 -15.36426 -15.11243 -14.89042 -14.64723 -14.00478 -13.49221 -13.14000 -13.03129 -12.83392 -12.77113 -12.65708 -12.44497 -12.29309 -12.08391 -12.00434 -11.74700 -11.61433 -11.10513 -10.97480 -10.81786 -10.78517 -10.52789 -10.17969 -10.08760 -9.79370 -9.47109 -8.25333 -5.92018 -0.47082 0.14745 1.45876 1.51008 1.61293 1.64803 1.91421 2.05967 2.26394 2.44205 2.85125 2.92755 3.02671 3.13868 3.29477 3.52527 3.73460 3.87897 3.95328 3.98616 4.12405 4.18593 4.23365 4.25853 4.40974 4.51785 4.65296 4.68990 4.74349 4.83490 4.91093 4.95721 5.02141 5.18120 5.35016 5.35459 5.42782 5.58805 5.69496 5.79284 5.92500 6.07598 6.11683 6.49792 6.63623 7.11900 7.34669 7.53709 7.88697 8.78007 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.015382 B = 0.003954 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.914215 B = 7079.714439 C = 8558.532870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.012 3.988 3 Si 0.983 3.017 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.305 4.305 8 H 0.109 0.891 9 N -0.379 5.379 10 C 0.490 3.510 11 O -0.599 6.599 12 C 0.391 3.609 13 N -0.561 5.561 14 C 0.588 3.412 15 N -0.783 5.783 16 N -0.632 5.632 17 C 0.545 3.455 18 N -0.457 5.457 19 C 0.031 3.969 20 C 0.074 3.926 21 O -0.394 6.394 22 C 0.066 3.934 23 C 0.036 3.964 24 N -0.592 5.592 25 C 0.082 3.918 26 C -0.167 4.167 27 C -0.157 4.157 28 H 0.272 0.728 29 H 0.424 0.576 30 H 0.428 0.572 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.069 0.931 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.406 -3.633 8.534 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.434 4.434 8 H 0.127 0.873 9 N -0.095 5.095 10 C 0.277 3.723 11 O -0.484 6.484 12 C 0.112 3.888 13 N -0.295 5.295 14 C 0.221 3.779 15 N -0.334 5.334 16 N -0.370 5.370 17 C 0.179 3.821 18 N -0.179 5.179 19 C -0.096 4.096 20 C -0.003 4.003 21 O -0.313 6.313 22 C -0.011 4.011 23 C -0.091 4.091 24 N -0.323 5.323 25 C -0.022 4.022 26 C -0.204 4.204 27 C -0.194 4.194 28 H 0.082 0.918 29 H 0.257 0.743 30 H 0.262 0.738 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.151 0.849 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.209 -4.416 8.262 13.856 hybrid contribution -0.166 1.907 0.176 1.922 sum 10.043 -2.509 8.439 13.356 Atomic orbital electron populations 1.69923 1.07857 1.28772 1.45519 1.26278 0.95769 1.02659 0.94547 0.85078 0.79031 0.76631 0.78611 1.20164 1.21088 1.17059 1.20059 0.93740 0.82456 1.47179 0.87332 1.43028 1.30247 1.08395 1.27820 1.17753 0.85472 0.85648 0.83445 1.90594 1.57786 1.30241 1.69768 1.22915 0.90335 0.82980 0.92603 1.69767 1.15351 1.27740 1.16659 1.19955 0.85635 0.87699 0.84640 1.41606 1.48125 1.02736 1.40976 1.68345 1.36301 0.97985 1.34409 1.21101 0.84998 0.88134 0.87868 1.58566 1.15235 1.14286 1.29790 1.22961 0.90956 0.96389 0.99261 1.22793 0.93134 0.93013 0.91394 1.87982 1.32884 1.74945 1.35458 1.22930 0.88304 0.89585 1.00297 1.22854 0.95368 0.99473 0.91376 1.68534 1.18685 1.32443 1.12621 1.21499 0.92734 1.02976 0.85015 1.23132 1.03294 0.91390 1.02628 1.23091 1.01953 0.98518 0.95858 0.91822 0.74317 0.73812 0.93598 0.89027 0.90915 0.85252 0.91271 0.84871 0.88174 0.92576 0.87755 0.90397 0.87126 0.87046 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.11 11.57 21.71 0.25 -44.86 16 2 C 0.01 0.59 5.25 85.03 0.45 1.04 16 3 Si 0.98 37.12 29.57 68.60 2.03 39.15 16 4 H -0.28 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.29 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 7 C -0.30 -15.24 7.41 84.20 0.62 -14.61 16 8 H 0.11 5.41 6.12 -2.91 -0.02 5.39 16 9 N -0.38 -19.71 2.83 -615.69 -1.74 -21.45 16 10 C 0.49 26.44 7.53 87.00 0.65 27.09 16 11 O -0.60 -34.10 15.02 -3.74 -0.06 -34.16 16 12 C 0.39 19.35 7.51 137.45 1.03 20.38 16 13 N -0.56 -25.14 6.71 -191.59 -1.29 -26.42 16 14 C 0.59 21.68 8.76 261.28 2.29 23.97 16 15 N -0.78 -20.42 9.05 -59.49 -0.54 -20.96 16 16 N -0.63 -22.45 8.88 -200.68 -1.78 -24.23 16 17 C 0.55 21.03 7.19 261.28 1.88 22.90 16 18 N -0.46 -14.12 4.78 -707.45 -3.38 -17.50 16 19 C 0.03 0.86 5.50 86.32 0.47 1.33 16 20 C 0.07 1.48 7.01 72.02 0.50 1.99 16 21 O -0.39 -8.29 10.83 -148.98 -1.61 -9.90 16 22 C 0.07 1.15 7.01 72.01 0.50 1.65 16 23 C 0.04 0.84 4.82 86.31 0.42 1.26 16 24 N -0.59 -27.33 9.62 -191.60 -1.84 -29.17 16 25 C 0.08 3.91 4.59 44.99 0.21 4.12 16 26 C -0.17 -6.94 9.20 30.62 0.28 -6.66 16 27 C -0.16 -6.24 10.34 30.62 0.32 -5.92 16 28 H 0.27 13.09 8.30 -92.71 -0.77 12.32 16 29 H 0.42 10.59 8.95 -92.71 -0.83 9.76 16 30 H 0.43 8.06 8.95 -92.71 -0.83 7.23 16 31 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 2.93 7.70 -2.39 -0.02 2.91 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 2.28 7.85 -2.39 -0.02 2.26 16 38 H 0.06 1.39 8.03 -2.39 -0.02 1.37 16 39 H 0.10 5.39 7.18 -2.38 -0.02 5.37 16 40 H 0.08 3.54 7.11 -2.39 -0.02 3.53 16 41 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 42 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 43 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -68.76 357.61 -0.91 -69.66 By element: Atomic # 1 Polarization: 41.87 SS G_CDS: -0.57 Total: 41.30 kcal Atomic # 6 Polarization: 68.92 SS G_CDS: 9.63 Total: 78.55 kcal Atomic # 7 Polarization: -174.27 SS G_CDS: -10.32 Total: -184.59 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -1.67 Total: -44.06 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -68.76 -0.91 -69.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349521622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.504 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds