Wall clock time and date at job start Tue Mar 31 2020 17:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99605 * 2 1 4 4 O 1.21280 * 120.00183 * 359.72007 * 3 2 1 5 5 C 1.50698 * 119.99660 * 179.72515 * 3 2 1 6 6 H 1.08998 * 109.51361 * 54.89858 * 5 3 2 7 7 C 1.53293 * 109.51380 * 294.74205 * 5 3 2 8 8 N 1.47155 * 108.38651 * 187.77896 * 7 5 3 9 9 C 1.34771 * 120.97860 * 230.55833 * 8 7 5 10 10 O 1.21576 * 120.00537 * 354.99587 * 9 8 7 11 11 N 1.34781 * 120.00053 * 174.99884 * 9 8 7 12 12 C 1.39237 * 120.00094 * 185.81132 * 11 9 8 13 13 C 1.39691 * 119.57926 * 18.17174 * 12 11 9 14 14 C 1.38641 * 119.49535 * 179.97438 * 13 12 11 15 15 C 1.38353 * 118.67335 * 0.02562 * 14 13 12 16 16 C 1.40572 * 119.13222 * 359.97438 * 15 14 13 17 17 C 1.41326 * 119.78747 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00340 * 0.02562 * 17 16 15 19 19 C 1.40031 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.30739 * 119.99830 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00195 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46922 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47411 * 119.99861 * 21 19 17 24 24 H 1.48502 * 109.46857 * 239.99802 * 21 19 17 25 25 N 1.31903 * 119.57335 * 197.89568 * 12 11 9 26 26 C 1.47144 * 118.03533 * 50.53318 * 8 7 5 27 27 C 1.53299 * 108.38884 * 309.46633 * 26 8 7 28 28 O 1.42964 * 109.22169 * 52.30255 * 27 26 8 29 29 H 1.09002 * 109.46704 * 180.27988 * 1 2 3 30 30 H 1.09002 * 109.47295 * 300.27395 * 1 2 3 31 31 H 1.08998 * 109.47084 * 60.28070 * 1 2 3 32 32 H 0.96992 * 120.00234 * 179.72148 * 2 1 3 33 33 H 1.09007 * 109.68127 * 307.50185 * 7 5 3 34 34 H 1.09002 * 109.68119 * 68.05160 * 7 5 3 35 35 H 0.96999 * 119.99473 * 5.80382 * 11 9 8 36 36 H 1.07996 * 120.24580 * 0.02562 * 13 12 11 37 37 H 1.08005 * 120.66081 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.43265 * 179.97438 * 15 14 13 39 39 H 0.97000 * 119.99988 * 180.02562 * 20 19 17 40 40 H 1.09005 * 109.68170 * 189.74349 * 26 8 7 41 41 H 1.09000 * 109.68553 * 69.19278 * 26 8 7 42 42 H 1.09001 * 109.50767 * 292.37993 * 27 26 8 43 43 H 1.08997 * 109.55440 * 172.25050 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 -0.0051 5 6 3.6458 1.1673 0.0063 6 1 4.0134 0.5745 -0.8313 7 6 4.1524 0.5657 1.3221 8 7 5.6113 0.7478 1.3844 9 6 6.4283 -0.2871 1.6631 10 8 5.9595 -1.3698 1.9568 11 7 7.7651 -0.1220 1.6163 12 6 8.6082 -1.2172 1.7848 13 6 8.1019 -2.5088 1.6214 14 6 8.9430 -3.5980 1.7891 15 6 10.2678 -3.3696 2.1161 16 6 10.7171 -2.0462 2.2667 17 6 12.0677 -1.7969 2.6000 18 1 12.7511 -2.6217 2.7377 19 6 12.5199 -0.4803 2.7517 20 7 11.6928 0.5183 2.5845 21 14 14.3052 -0.1508 3.1915 22 1 15.0287 -1.4409 3.3239 23 1 14.9363 0.6637 2.1222 24 1 14.3698 0.5868 4.4788 25 7 9.8762 -1.0216 2.0913 26 6 6.1517 2.0931 1.1329 27 6 5.5477 2.6204 -0.1738 28 8 4.1237 2.5095 -0.1125 29 1 -0.3633 -1.0277 0.0050 30 1 -0.3634 0.5181 0.8875 31 1 -0.3633 0.5095 -0.8925 32 1 1.9500 -0.8399 0.0041 33 1 3.6826 1.0751 2.1635 34 1 3.9133 -0.4972 1.3558 35 1 8.1398 0.7599 1.4651 36 1 7.0632 -2.6576 1.3656 37 1 8.5715 -4.6048 1.6669 38 1 10.9479 -4.1972 2.2537 39 1 12.0062 1.4303 2.6892 40 1 7.2367 2.0417 1.0413 41 1 5.8832 2.7563 1.9552 42 1 5.9230 2.0326 -1.0115 43 1 5.8260 3.6656 -0.3086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365075965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:23 Heat of formation + Delta-G solvation = -37.189681 kcal Electronic energy + Delta-G solvation = -28683.889917 eV Core-core repulsion = 24537.709085 eV Total energy + Delta-G solvation = -4146.180832 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.93765 -39.91411 -38.59639 -37.68273 -35.08682 -34.71503 -34.47227 -33.30138 -32.02295 -30.43383 -29.36436 -28.47473 -26.76887 -25.48642 -24.77669 -23.07330 -21.65377 -21.51857 -20.73630 -19.55796 -18.61995 -17.64920 -17.53446 -17.12156 -16.55471 -15.96696 -15.65936 -15.56155 -15.40839 -14.91084 -14.84465 -14.55486 -14.45801 -14.18355 -13.82049 -13.49625 -13.29147 -12.99653 -12.90103 -12.62081 -12.37779 -12.28013 -11.99187 -11.87292 -11.31692 -11.22766 -11.08856 -10.93923 -10.69253 -10.40709 -10.12466 -10.09011 -9.96122 -9.49782 -9.39505 -9.15428 -8.68352 -8.07715 -7.72940 -7.12889 -6.45910 -4.54444 2.17857 2.49671 2.55114 2.64026 2.89731 3.06607 3.10872 3.20215 3.52862 3.68891 3.91595 3.98147 4.32776 4.41533 4.58938 4.72775 4.75563 4.86221 4.92861 4.97596 5.17188 5.21945 5.41208 5.44146 5.45645 5.62207 5.87113 5.99135 6.06100 6.17516 6.35812 6.63302 6.65490 6.76877 6.85835 6.93459 7.09569 7.12854 7.44447 7.53329 7.84868 7.86354 7.95859 8.10071 8.30669 8.65041 8.76983 8.94775 10.00065 10.26903 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.002667 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.827809 B =10495.740451 C =11633.338563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.733 5.733 3 C 0.525 3.475 4 O -0.515 6.515 5 C 0.059 3.941 6 H 0.091 0.909 7 C 0.113 3.887 8 N -0.634 5.634 9 C 0.714 3.286 10 O -0.564 6.564 11 N -0.656 5.656 12 C 0.372 3.628 13 C -0.314 4.314 14 C -0.049 4.049 15 C -0.290 4.290 16 C 0.280 3.720 17 C -0.434 4.434 18 H 0.086 0.914 19 C 0.071 3.929 20 N -0.723 5.723 21 Si 0.907 3.093 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.274 1.274 25 N -0.508 5.508 26 C 0.072 3.928 27 C 0.049 3.951 28 O -0.351 6.351 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.406 0.594 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.403 0.597 36 H 0.133 0.867 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.270 0.730 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.333 3.266 -5.670 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.387 5.387 3 C 0.309 3.691 4 O -0.388 6.388 5 C -0.003 4.003 6 H 0.109 0.891 7 C -0.012 4.012 8 N -0.374 5.374 9 C 0.415 3.585 10 O -0.440 6.440 11 N -0.304 5.304 12 C 0.137 3.863 13 C -0.339 4.339 14 C -0.073 4.073 15 C -0.313 4.313 16 C 0.153 3.847 17 C -0.466 4.466 18 H 0.104 0.896 19 C -0.153 4.153 20 N -0.345 5.345 21 Si 0.731 3.269 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.199 1.199 25 N -0.227 5.227 26 C -0.052 4.052 27 C -0.029 4.029 28 O -0.269 6.269 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.240 0.760 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.240 0.760 36 H 0.151 0.849 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.114 0.886 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.941 4.504 -5.374 16.504 hybrid contribution 1.184 -0.721 0.104 1.390 sum -13.757 3.783 -5.270 15.210 Atomic orbital electron populations 1.21567 0.78861 1.02550 1.02497 1.45717 1.08074 1.08498 1.76376 1.19992 0.88584 0.84060 0.76498 1.90737 1.69680 1.31130 1.47299 1.22319 0.91980 0.86689 0.99331 0.89114 1.21910 0.79788 1.03353 0.96124 1.47230 1.05812 1.08320 1.75994 1.15593 0.81121 0.83470 0.78286 1.90828 1.75077 1.24003 1.54133 1.42412 1.03510 1.11622 1.72862 1.18214 0.89452 0.84099 0.94582 1.21621 1.01866 0.91374 1.18991 1.20804 0.93424 0.96882 0.96215 1.21708 0.95939 0.97536 1.16113 1.18171 0.92313 0.85830 0.88341 1.19602 0.93523 0.92887 1.40572 0.89606 1.26041 0.99346 0.96195 0.93761 1.70119 1.34830 0.99399 1.30170 0.86280 0.82381 0.79486 0.78708 1.18401 1.19896 1.19917 1.68003 0.99977 1.34405 1.20338 1.22433 0.99868 0.84055 0.98849 1.23098 0.80409 1.03054 0.96340 1.88074 1.21084 1.23389 1.94339 0.90280 0.91994 0.92087 0.75994 0.90321 0.87348 0.75965 0.84940 0.88339 0.88220 0.91913 0.88591 0.89945 0.92033 0.86723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.57 10.70 59.85 0.64 1.21 16 2 N -0.73 -5.70 5.68 -67.08 -0.38 -6.08 16 3 C 0.52 5.93 7.18 -10.99 -0.08 5.85 16 4 O -0.51 -7.91 16.51 -14.28 -0.24 -8.14 16 5 C 0.06 0.64 3.19 -27.73 -0.09 0.55 16 6 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 7 C 0.11 1.29 5.87 -3.53 -0.02 1.27 16 8 N -0.63 -8.55 3.02 -178.00 -0.54 -9.09 16 9 C 0.71 12.82 8.16 -86.92 -0.71 12.12 16 10 O -0.56 -11.65 12.61 5.30 0.07 -11.59 16 11 N -0.66 -12.92 5.33 -15.79 -0.08 -13.00 16 12 C 0.37 9.02 7.52 -155.00 -1.16 7.86 16 13 C -0.31 -7.49 8.84 -38.89 -0.34 -7.83 16 14 C -0.05 -1.13 10.15 -39.39 -0.40 -1.53 16 15 C -0.29 -7.17 9.83 -38.66 -0.38 -7.55 16 16 C 0.28 7.58 6.55 -85.00 -0.56 7.02 16 17 C -0.43 -11.38 9.14 -37.74 -0.34 -11.72 16 18 H 0.09 2.11 7.85 -52.49 -0.41 1.70 16 19 C 0.07 1.75 5.50 -17.35 -0.10 1.66 16 20 N -0.72 -18.36 11.46 55.55 0.64 -17.72 16 21 Si 0.91 18.13 29.56 -169.99 -5.02 13.10 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 N -0.51 -13.60 7.89 -10.26 -0.08 -13.68 16 26 C 0.07 0.77 6.63 -3.54 -0.02 0.75 16 27 C 0.05 0.47 6.99 37.31 0.26 0.73 16 28 O -0.35 -4.29 9.92 -55.06 -0.55 -4.84 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.41 2.22 8.83 -40.82 -0.36 1.86 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 1.21 7.12 -51.93 -0.37 0.84 16 35 H 0.40 7.11 6.34 -40.82 -0.26 6.86 16 36 H 0.13 3.10 5.29 -52.55 -0.28 2.82 16 37 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 38 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.27 6.17 8.29 -40.82 -0.34 5.83 16 40 H 0.10 1.01 5.67 -51.93 -0.29 0.71 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -34.80 360.15 -9.40 -44.20 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.33 Total: 11.03 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -3.30 Total: 10.38 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.45 Total: -59.58 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.72 Total: -24.57 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.80 -9.40 -44.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365075965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.014 kcal (2) G-P(sol) polarization free energy of solvation -34.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds