Wall clock time and date at job start Tue Mar 31 2020 17:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34778 * 119.99605 * 2 1 4 4 O 1.21280 * 120.00183 * 359.72007 * 3 2 1 5 5 C 1.50698 * 119.99660 * 179.72515 * 3 2 1 6 6 H 1.08998 * 109.51361 * 54.89858 * 5 3 2 7 7 C 1.53293 * 109.51380 * 294.74205 * 5 3 2 8 8 N 1.47155 * 108.38651 * 187.77896 * 7 5 3 9 9 C 1.34771 * 120.97860 * 230.55833 * 8 7 5 10 10 O 1.21576 * 120.00537 * 354.99587 * 9 8 7 11 11 N 1.34781 * 120.00053 * 174.99884 * 9 8 7 12 12 C 1.39237 * 120.00094 * 185.81132 * 11 9 8 13 13 C 1.39691 * 119.57926 * 18.17174 * 12 11 9 14 14 C 1.38641 * 119.49535 * 179.97438 * 13 12 11 15 15 C 1.38353 * 118.67335 * 0.02562 * 14 13 12 16 16 C 1.40572 * 119.13222 * 359.97438 * 15 14 13 17 17 C 1.41326 * 119.78747 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00340 * 0.02562 * 17 16 15 19 19 C 1.40031 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.30739 * 119.99830 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00195 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46922 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47411 * 119.99861 * 21 19 17 24 24 H 1.48502 * 109.46857 * 239.99802 * 21 19 17 25 25 N 1.31903 * 119.57335 * 197.89568 * 12 11 9 26 26 C 1.47144 * 118.03533 * 50.53318 * 8 7 5 27 27 C 1.53299 * 108.38884 * 309.46633 * 26 8 7 28 28 O 1.42964 * 109.22169 * 52.30255 * 27 26 8 29 29 H 1.09002 * 109.46704 * 180.27988 * 1 2 3 30 30 H 1.09002 * 109.47295 * 300.27395 * 1 2 3 31 31 H 1.08998 * 109.47084 * 60.28070 * 1 2 3 32 32 H 0.96992 * 120.00234 * 179.72148 * 2 1 3 33 33 H 1.09007 * 109.68127 * 307.50185 * 7 5 3 34 34 H 1.09002 * 109.68119 * 68.05160 * 7 5 3 35 35 H 0.96999 * 119.99473 * 5.80382 * 11 9 8 36 36 H 1.07996 * 120.24580 * 0.02562 * 13 12 11 37 37 H 1.08005 * 120.66081 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.43265 * 179.97438 * 15 14 13 39 39 H 0.97000 * 119.99988 * 180.02562 * 20 19 17 40 40 H 1.09005 * 109.68170 * 189.74349 * 26 8 7 41 41 H 1.09000 * 109.68553 * 69.19278 * 26 8 7 42 42 H 1.09001 * 109.50767 * 292.37993 * 27 26 8 43 43 H 1.08997 * 109.55440 * 172.25050 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2175 -0.0051 5 6 3.6458 1.1673 0.0063 6 1 4.0134 0.5745 -0.8313 7 6 4.1524 0.5657 1.3221 8 7 5.6113 0.7478 1.3844 9 6 6.4283 -0.2871 1.6631 10 8 5.9595 -1.3698 1.9568 11 7 7.7651 -0.1220 1.6163 12 6 8.6082 -1.2172 1.7848 13 6 8.1019 -2.5088 1.6214 14 6 8.9430 -3.5980 1.7891 15 6 10.2678 -3.3696 2.1161 16 6 10.7171 -2.0462 2.2667 17 6 12.0677 -1.7969 2.6000 18 1 12.7511 -2.6217 2.7377 19 6 12.5199 -0.4803 2.7517 20 7 11.6928 0.5183 2.5845 21 14 14.3052 -0.1508 3.1915 22 1 15.0287 -1.4409 3.3239 23 1 14.9363 0.6637 2.1222 24 1 14.3698 0.5868 4.4788 25 7 9.8762 -1.0216 2.0913 26 6 6.1517 2.0931 1.1329 27 6 5.5477 2.6204 -0.1738 28 8 4.1237 2.5095 -0.1125 29 1 -0.3633 -1.0277 0.0050 30 1 -0.3634 0.5181 0.8875 31 1 -0.3633 0.5095 -0.8925 32 1 1.9500 -0.8399 0.0041 33 1 3.6826 1.0751 2.1635 34 1 3.9133 -0.4972 1.3558 35 1 8.1398 0.7599 1.4651 36 1 7.0632 -2.6576 1.3656 37 1 8.5715 -4.6048 1.6669 38 1 10.9479 -4.1972 2.2537 39 1 12.0062 1.4303 2.6892 40 1 7.2367 2.0417 1.0413 41 1 5.8832 2.7563 1.9552 42 1 5.9230 2.0326 -1.0115 43 1 5.8260 3.6656 -0.3086 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365075965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:22 Heat of formation + Delta-G solvation = -61.681883 kcal Electronic energy + Delta-G solvation = -28684.951979 eV Core-core repulsion = 24537.709085 eV Total energy + Delta-G solvation = -4147.242894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.147 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.12785 -41.06965 -39.92218 -39.09308 -36.15397 -36.11505 -35.65147 -35.03248 -32.96832 -32.29126 -31.07019 -29.46276 -27.77206 -27.18562 -25.68768 -24.25165 -23.49583 -22.96936 -21.61723 -20.95623 -19.86595 -19.26852 -18.62345 -18.22399 -17.85080 -17.19175 -16.82236 -16.76526 -16.46926 -16.25924 -16.22622 -15.81358 -15.58687 -15.44667 -15.21621 -14.84966 -14.65388 -14.17021 -14.03557 -13.82498 -13.77497 -13.28233 -13.09755 -12.91757 -12.87625 -12.73871 -12.63150 -12.57689 -11.98892 -11.80515 -11.66625 -11.37158 -11.11299 -11.02019 -10.81884 -10.23193 -9.98728 -9.80253 -9.61629 -8.93746 -8.29777 -6.48993 0.80266 1.12387 1.16774 1.44131 1.47979 1.54586 1.58347 1.75747 2.00933 2.25181 2.64231 2.89113 2.92155 3.44757 3.61515 3.72299 3.87788 3.93942 4.02016 4.14058 4.27659 4.34786 4.46956 4.53610 4.60131 4.63296 4.69300 4.78591 4.87182 4.92895 4.95482 4.98502 5.21704 5.25386 5.31277 5.51284 5.67956 5.73906 5.84692 5.98821 6.16470 6.29069 6.40469 6.66045 6.80881 6.97969 7.08352 7.35411 8.11250 8.45913 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.002667 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.827809 B =10495.740451 C =11633.338563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.717 5.717 3 C 0.524 3.476 4 O -0.561 6.561 5 C 0.066 3.934 6 H 0.107 0.893 7 C 0.113 3.887 8 N -0.623 5.623 9 C 0.714 3.286 10 O -0.593 6.593 11 N -0.654 5.654 12 C 0.363 3.637 13 C -0.324 4.324 14 C -0.047 4.047 15 C -0.310 4.310 16 C 0.246 3.754 17 C -0.465 4.465 18 H 0.091 0.909 19 C 0.027 3.973 20 N -0.752 5.752 21 Si 0.987 3.013 22 H -0.256 1.256 23 H -0.265 1.265 24 H -0.269 1.269 25 N -0.534 5.534 26 C 0.067 3.933 27 C 0.052 3.948 28 O -0.371 6.371 29 H 0.113 0.887 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.419 0.581 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.410 0.590 36 H 0.139 0.861 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.279 0.721 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.313 3.377 -5.996 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.371 5.371 3 C 0.308 3.692 4 O -0.439 6.439 5 C 0.003 3.997 6 H 0.124 0.876 7 C -0.010 4.010 8 N -0.361 5.361 9 C 0.415 3.585 10 O -0.472 6.472 11 N -0.303 5.303 12 C 0.127 3.873 13 C -0.349 4.349 14 C -0.071 4.071 15 C -0.333 4.333 16 C 0.120 3.880 17 C -0.496 4.496 18 H 0.109 0.891 19 C -0.195 4.195 20 N -0.374 5.374 21 Si 0.807 3.193 22 H -0.180 1.180 23 H -0.190 1.190 24 H -0.194 1.194 25 N -0.254 5.254 26 C -0.055 4.055 27 C -0.025 4.025 28 O -0.289 6.289 29 H 0.132 0.868 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.256 0.744 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.250 0.750 36 H 0.157 0.843 37 H 0.149 0.851 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.970 4.608 -5.721 16.675 hybrid contribution 1.037 -0.755 0.187 1.297 sum -13.932 3.853 -5.534 15.478 Atomic orbital electron populations 1.21747 0.77754 1.04618 1.01817 1.45701 1.08863 1.08111 1.74395 1.20127 0.88755 0.84252 0.76028 1.90717 1.70438 1.32838 1.49899 1.22314 0.91730 0.86446 0.99190 0.87583 1.22034 0.78324 1.03825 0.96831 1.47222 1.06210 1.08288 1.74424 1.15667 0.80688 0.84035 0.78066 1.90786 1.75377 1.25560 1.55435 1.42314 1.03911 1.11011 1.73053 1.18539 0.89365 0.85635 0.93751 1.21862 1.02276 0.91649 1.19144 1.21175 0.92782 0.98405 0.94754 1.21885 0.97013 0.97233 1.17131 1.18672 0.93202 0.87041 0.89123 1.19956 0.93764 0.94153 1.41764 0.89127 1.26924 1.03981 0.95403 0.93204 1.70184 1.37030 1.00072 1.30155 0.85090 0.76323 0.79357 0.78510 1.17980 1.19013 1.19379 1.68019 1.00958 1.34820 1.21608 1.22665 1.00108 0.82596 1.00180 1.23239 0.79159 1.04646 0.95487 1.88069 1.22382 1.24107 1.94328 0.86835 0.92816 0.92668 0.74439 0.90142 0.86897 0.75048 0.84335 0.85075 0.86964 0.91038 0.88354 0.88908 0.91474 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.70 127.77 1.37 2.30 16 2 N -0.72 -10.02 5.68 -484.52 -2.75 -12.77 16 3 C 0.52 11.33 7.18 87.66 0.63 11.96 16 4 O -0.56 -17.14 16.51 15.93 0.26 -16.88 16 5 C 0.07 1.32 3.19 29.95 0.10 1.41 16 6 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 7 C 0.11 2.46 5.87 86.35 0.51 2.96 16 8 N -0.62 -16.09 3.02 -835.35 -2.52 -18.61 16 9 C 0.71 25.23 8.16 179.05 1.46 26.69 16 10 O -0.59 -24.20 12.61 -3.96 -0.05 -24.25 16 11 N -0.65 -25.73 5.33 -322.12 -1.72 -27.44 16 12 C 0.36 17.80 7.52 133.27 1.00 18.80 16 13 C -0.32 -15.47 8.84 22.72 0.20 -15.27 16 14 C -0.05 -2.15 10.15 22.39 0.23 -1.92 16 15 C -0.31 -15.44 9.83 22.87 0.22 -15.21 16 16 C 0.25 13.58 6.55 40.19 0.26 13.85 16 17 C -0.46 -24.72 9.14 23.46 0.21 -24.51 16 18 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 19 C 0.03 1.32 5.50 85.29 0.47 1.79 16 20 N -0.75 -38.41 11.46 21.84 0.25 -38.16 16 21 Si 0.99 36.86 29.56 68.60 2.03 38.89 16 22 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 23 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 24 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 25 N -0.53 -29.11 7.89 -186.37 -1.47 -30.58 16 26 C 0.07 1.35 6.63 86.36 0.57 1.92 16 27 C 0.05 0.89 6.99 72.08 0.50 1.39 16 28 O -0.37 -8.52 9.92 -130.02 -1.29 -9.81 16 29 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.42 3.69 8.83 -92.71 -0.82 2.87 16 33 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.11 2.36 7.12 -2.39 -0.02 2.34 16 35 H 0.41 14.48 6.34 -92.71 -0.59 13.89 16 36 H 0.14 6.42 5.29 -3.84 -0.02 6.40 16 37 H 0.13 5.01 8.06 -2.91 -0.02 4.98 16 38 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 39 H 0.28 12.71 8.29 -92.71 -0.77 11.94 16 40 H 0.10 1.95 5.67 -2.38 -0.01 1.93 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -76.24 360.15 0.15 -76.09 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -0.33 Total: 37.37 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 7.74 Total: 26.17 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -8.21 Total: -127.57 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -1.08 Total: -50.94 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 2.03 Total: 38.89 kcal Total: -76.24 0.15 -76.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365075965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.411 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds