Wall clock time and date at job start Tue Mar 31 2020 18:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48499 * 109.47522 * 274.24288 * 3 2 1 5 5 H 1.48507 * 109.47256 * 34.24543 * 3 2 1 6 6 H 1.48507 * 109.46899 * 154.24341 * 3 2 1 7 7 C 1.37876 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99722 * 352.90883 * 7 2 1 9 9 C 1.50704 * 120.00263 * 173.19361 * 7 2 1 10 10 C 1.52998 * 115.54563 * 301.36461 * 9 7 2 11 11 N 1.46498 * 109.47310 * 294.79303 * 10 9 7 12 12 C 1.34778 * 119.99663 * 184.70876 * 11 10 9 13 13 O 1.21584 * 120.00258 * 4.73664 * 12 11 10 14 14 N 1.34779 * 119.99537 * 184.72934 * 12 11 10 15 15 C 1.46498 * 119.99961 * 184.68371 * 14 12 11 16 16 C 1.50699 * 109.47316 * 180.02562 * 15 14 12 17 17 N 1.31642 * 126.29478 * 90.02823 * 16 15 14 18 18 N 1.29225 * 110.05666 * 179.97438 * 17 16 15 19 19 C 1.29818 * 109.12547 * 359.97438 * 18 17 16 20 20 N 1.33201 * 126.29445 * 269.71790 * 16 15 14 21 21 C 1.46047 * 131.93193 * 0.10432 * 20 16 15 22 22 C 1.52885 * 109.24254 * 150.42949 * 21 20 16 23 23 N 1.45766 * 112.73463 * 46.68009 * 22 21 20 24 24 C 1.35365 * 121.97103 * 321.22586 * 23 22 21 25 25 O 1.21604 * 121.77251 * 187.37927 * 24 23 22 26 26 C 1.53001 * 117.50059 * 155.69605 * 9 7 2 27 27 C 1.53001 * 117.49864 * 87.03551 * 9 7 2 28 28 H 0.97001 * 120.00265 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47282 * 54.79452 * 10 9 7 30 30 H 1.09003 * 109.46587 * 174.78768 * 10 9 7 31 31 H 0.96995 * 119.99834 * 4.70303 * 11 10 9 32 32 H 0.97001 * 120.00031 * 4.69283 * 14 12 11 33 33 H 1.08997 * 109.47217 * 300.00835 * 15 14 12 34 34 H 1.08999 * 109.46843 * 60.00666 * 15 14 12 35 35 H 1.09001 * 109.50432 * 270.35637 * 21 20 16 36 36 H 1.08995 * 109.50908 * 30.45674 * 21 20 16 37 37 H 1.09001 * 108.82424 * 167.51069 * 22 21 20 38 38 H 1.09000 * 108.83145 * 285.94146 * 22 21 20 39 39 H 0.96994 * 118.97507 * 141.62160 * 23 22 21 40 40 H 1.09000 * 117.49568 * 0.02562 * 26 9 7 41 41 H 1.08993 * 117.49839 * 145.01790 * 26 9 7 42 42 H 1.08999 * 117.49851 * 214.98167 * 27 9 7 43 43 H 1.08997 * 117.49732 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4069 2.0983 -1.3962 5 1 1.4942 2.6252 0.7879 6 1 3.5886 1.4159 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4707 -2.1258 0.1145 9 6 3.5036 -1.1985 -0.1552 10 6 4.0367 -0.5526 -1.4356 11 7 3.6011 -1.3348 -2.5952 12 6 4.0323 -1.0074 -3.8294 13 8 4.8494 -0.1184 -3.9719 14 7 3.5579 -1.6656 -4.9056 15 6 4.1009 -1.3813 -6.2362 16 6 3.4052 -2.2437 -7.2575 17 7 2.3127 -1.9349 -7.9239 18 7 1.9898 -2.9018 -8.7180 19 6 2.8555 -3.8612 -8.5941 20 7 3.7858 -3.4563 -7.6562 21 6 4.9140 -4.3006 -7.2721 22 6 4.5194 -5.7696 -7.4261 23 7 3.8584 -6.0452 -8.6956 24 6 2.9761 -5.1794 -9.2472 25 8 2.3285 -5.4676 -10.2353 26 6 4.2674 -2.4025 0.3997 27 6 4.3452 -1.0509 1.1140 28 1 -0.4850 0.8400 0.0004 29 1 3.6515 0.4637 -1.5175 30 1 5.1259 -0.5268 -1.4031 31 1 3.0024 -2.0884 -2.4746 32 1 2.8569 -2.3275 -4.7991 33 1 3.9394 -0.3307 -6.4776 34 1 5.1695 -1.5962 -6.2460 35 1 5.7667 -4.0833 -7.9154 36 1 5.1808 -4.1015 -6.2342 37 1 5.4170 -6.3840 -7.3561 38 1 3.8446 -6.0396 -6.6138 39 1 4.0527 -6.8767 -9.1558 40 1 3.6856 -3.1915 0.8762 41 1 5.1500 -2.7342 -0.1472 42 1 5.2789 -0.4939 1.0367 43 1 3.8146 -0.9500 2.0607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001427425161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:37 Heat of formation + Delta-G solvation = 60.117340 kcal Electronic energy + Delta-G solvation = -28364.559796 eV Core-core repulsion = 24254.891264 eV Total energy + Delta-G solvation = -4109.668532 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.88183 -40.04260 -39.69884 -37.50471 -37.24446 -35.26769 -34.17012 -33.53054 -32.24675 -31.47896 -30.47140 -27.82995 -26.30243 -25.14292 -24.94203 -24.61938 -21.73362 -21.52717 -20.66405 -20.08142 -19.40616 -18.64006 -18.12622 -17.71465 -17.48374 -16.89131 -16.43448 -15.84652 -15.55848 -15.40582 -15.26007 -14.92693 -14.67388 -14.26012 -14.15874 -13.64110 -13.54309 -13.43148 -13.16221 -12.93770 -12.88780 -12.34486 -12.17103 -12.02818 -11.14085 -11.09794 -10.92972 -10.83424 -10.73095 -10.63020 -10.31592 -10.18614 -9.99266 -9.79670 -9.56586 -9.28722 -9.23019 -8.89976 -8.54862 -8.29164 -6.22551 -4.25043 0.54755 1.63514 1.79162 2.17007 2.67815 2.97048 3.26814 3.36797 3.37288 3.40365 3.41841 3.49257 3.66072 4.03886 4.13498 4.34306 4.38715 4.47422 4.50715 4.79571 4.82530 4.91423 5.17094 5.19993 5.33788 5.42881 5.60090 5.88253 5.88687 6.06554 6.07565 6.15499 6.22457 6.30453 6.35668 6.41015 6.64162 6.84650 6.97676 7.03467 7.19619 7.30230 7.61600 8.08049 8.32268 8.36421 8.78481 8.86223 9.40818 10.88322 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.002661 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.771356 B =10519.106006 C =10886.000261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.252 1.252 7 C -0.493 4.493 8 H 0.078 0.922 9 C -0.015 4.015 10 C 0.171 3.829 11 N -0.714 5.714 12 C 0.705 3.295 13 O -0.599 6.599 14 N -0.751 5.751 15 C 0.228 3.772 16 C 0.205 3.795 17 N -0.275 5.275 18 N -0.204 5.204 19 C 0.118 3.882 20 N -0.458 5.458 21 C 0.082 3.918 22 C 0.099 3.901 23 N -0.725 5.725 24 C 0.620 3.380 25 O -0.486 6.486 26 C -0.181 4.181 27 C -0.188 4.188 28 H 0.267 0.733 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.404 0.596 32 H 0.400 0.600 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.118 0.882 38 H 0.083 0.917 39 H 0.417 0.583 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.327 -13.471 -13.210 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.120 4.120 3 Si 0.697 3.303 4 H -0.203 1.203 5 H -0.219 1.219 6 H -0.176 1.176 7 C -0.530 4.530 8 H 0.096 0.904 9 C -0.016 4.016 10 C 0.047 3.953 11 N -0.367 5.367 12 C 0.405 3.595 13 O -0.478 6.478 14 N -0.410 5.410 15 C 0.101 3.899 16 C -0.062 4.062 17 N -0.119 5.119 18 N -0.047 5.047 19 C -0.149 4.149 20 N -0.152 5.152 21 C -0.041 4.041 22 C -0.026 4.026 23 N -0.382 5.382 24 C 0.402 3.598 25 O -0.355 6.355 26 C -0.218 4.218 27 C -0.226 4.226 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.239 0.761 32 H 0.234 0.766 33 H 0.127 0.873 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.143 0.857 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.255 0.745 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.353 -11.730 -14.213 22.758 hybrid contribution 0.916 -0.670 0.503 1.241 sum 14.269 -12.400 -13.710 23.353 Atomic orbital electron populations 1.69882 1.06416 1.27434 1.48783 1.24917 0.94512 0.99118 0.93442 0.87016 0.81243 0.83586 0.78418 1.20277 1.21920 1.17593 1.20233 0.86715 0.94652 1.51412 0.90447 1.19590 0.94759 0.97783 0.89508 1.20999 0.96678 0.94015 0.83578 1.44990 1.51890 1.35530 1.04264 1.15855 0.81489 0.81628 0.80517 1.90899 1.37800 1.33618 1.85503 1.44955 1.44277 1.46809 1.04926 1.19310 0.95509 0.97855 0.77201 1.24705 0.95562 0.85621 1.00307 1.75251 1.10343 1.19506 1.06789 1.74273 1.19557 0.96547 1.14314 1.24610 0.92558 0.99623 0.98084 1.46460 1.22829 1.14709 1.31231 1.22456 0.87465 0.89149 1.05018 1.21618 1.00075 0.94480 0.86429 1.45615 1.44767 1.23462 1.24367 1.16514 0.79393 0.81194 0.82739 1.90948 1.43305 1.76796 1.24414 1.22769 1.01692 0.91908 1.05400 1.23067 1.01221 0.99655 0.98688 0.92337 0.92719 0.93084 0.76093 0.76607 0.87348 0.89365 0.87705 0.85714 0.86434 0.89902 0.74475 0.89716 0.90932 0.91089 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.96 55.43 0.77 -25.02 16 2 C 0.08 2.28 5.46 -17.82 -0.10 2.18 16 3 Si 0.87 21.02 24.69 -169.99 -4.20 16.82 16 4 H -0.28 -6.86 6.96 56.52 0.39 -6.46 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.25 -5.71 6.12 56.52 0.35 -5.37 16 7 C -0.49 -12.49 9.19 -34.44 -0.32 -12.81 16 8 H 0.08 2.13 8.06 -52.48 -0.42 1.71 16 9 C -0.02 -0.32 0.85 -155.66 -0.13 -0.45 16 10 C 0.17 3.47 5.08 -4.04 -0.02 3.45 16 11 N -0.71 -12.59 5.48 -65.23 -0.36 -12.95 16 12 C 0.71 11.80 8.55 -86.92 -0.74 11.05 16 13 O -0.60 -12.00 16.33 5.29 0.09 -11.91 16 14 N -0.75 -9.24 5.55 -66.42 -0.37 -9.60 16 15 C 0.23 2.38 6.15 -5.20 -0.03 2.35 16 16 C 0.21 2.22 7.46 -156.10 -1.16 1.06 16 17 N -0.27 -4.01 12.26 32.56 0.40 -3.61 16 18 N -0.20 -3.07 12.24 32.42 0.40 -2.68 16 19 C 0.12 1.37 7.92 -154.50 -1.22 0.15 16 20 N -0.46 -3.82 3.12 -111.96 -0.35 -4.17 16 21 C 0.08 0.25 7.12 -4.35 -0.03 0.22 16 22 C 0.10 0.16 7.03 -4.50 -0.03 0.13 16 23 N -0.72 -3.33 5.56 -61.73 -0.34 -3.68 16 24 C 0.62 6.21 8.04 -12.17 -0.10 6.11 16 25 O -0.49 -6.67 18.01 5.27 0.09 -6.58 16 26 C -0.18 -3.22 9.96 -26.69 -0.27 -3.48 16 27 C -0.19 -3.63 8.70 -26.69 -0.23 -3.86 16 28 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.05 1.26 4.25 -51.93 -0.22 1.04 16 30 H 0.05 0.98 8.06 -51.93 -0.42 0.57 16 31 H 0.40 6.63 8.36 -40.82 -0.34 6.29 16 32 H 0.40 4.41 8.49 -40.82 -0.35 4.06 16 33 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.12 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.12 -0.23 8.14 -51.93 -0.42 -0.65 16 38 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.42 1.04 8.92 -40.82 -0.36 0.68 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 LS Contribution 364.77 15.07 5.50 5.50 Total: -1.00 -36.96 364.77 -8.30 -45.26 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.54 Total: 6.53 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -4.39 Total: 6.09 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.15 Total: -61.71 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: 0.18 Total: -18.49 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.20 Total: 16.82 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.96 -8.30 -45.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427425161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.376 kcal (2) G-P(sol) polarization free energy of solvation -36.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds