Wall clock time and date at job start Tue Mar 31 2020 18:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48499 * 109.47522 * 274.24288 * 3 2 1 5 5 H 1.48507 * 109.47256 * 34.24543 * 3 2 1 6 6 H 1.48507 * 109.46899 * 154.24341 * 3 2 1 7 7 C 1.37876 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99722 * 352.90883 * 7 2 1 9 9 C 1.50704 * 120.00263 * 173.19361 * 7 2 1 10 10 C 1.52998 * 115.54563 * 301.36461 * 9 7 2 11 11 N 1.46498 * 109.47310 * 294.79303 * 10 9 7 12 12 C 1.34778 * 119.99663 * 184.70876 * 11 10 9 13 13 O 1.21584 * 120.00258 * 4.73664 * 12 11 10 14 14 N 1.34779 * 119.99537 * 184.72934 * 12 11 10 15 15 C 1.46498 * 119.99961 * 184.68371 * 14 12 11 16 16 C 1.50699 * 109.47316 * 180.02562 * 15 14 12 17 17 N 1.31642 * 126.29478 * 90.02823 * 16 15 14 18 18 N 1.29225 * 110.05666 * 179.97438 * 17 16 15 19 19 C 1.29818 * 109.12547 * 359.97438 * 18 17 16 20 20 N 1.33201 * 126.29445 * 269.71790 * 16 15 14 21 21 C 1.46047 * 131.93193 * 0.10432 * 20 16 15 22 22 C 1.52885 * 109.24254 * 150.42949 * 21 20 16 23 23 N 1.45766 * 112.73463 * 46.68009 * 22 21 20 24 24 C 1.35365 * 121.97103 * 321.22586 * 23 22 21 25 25 O 1.21604 * 121.77251 * 187.37927 * 24 23 22 26 26 C 1.53001 * 117.50059 * 155.69605 * 9 7 2 27 27 C 1.53001 * 117.49864 * 87.03551 * 9 7 2 28 28 H 0.97001 * 120.00265 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47282 * 54.79452 * 10 9 7 30 30 H 1.09003 * 109.46587 * 174.78768 * 10 9 7 31 31 H 0.96995 * 119.99834 * 4.70303 * 11 10 9 32 32 H 0.97001 * 120.00031 * 4.69283 * 14 12 11 33 33 H 1.08997 * 109.47217 * 300.00835 * 15 14 12 34 34 H 1.08999 * 109.46843 * 60.00666 * 15 14 12 35 35 H 1.09001 * 109.50432 * 270.35637 * 21 20 16 36 36 H 1.08995 * 109.50908 * 30.45674 * 21 20 16 37 37 H 1.09001 * 108.82424 * 167.51069 * 22 21 20 38 38 H 1.09000 * 108.83145 * 285.94146 * 22 21 20 39 39 H 0.96994 * 118.97507 * 141.62160 * 23 22 21 40 40 H 1.09000 * 117.49568 * 0.02562 * 26 9 7 41 41 H 1.08993 * 117.49839 * 145.01790 * 26 9 7 42 42 H 1.08999 * 117.49851 * 214.98167 * 27 9 7 43 43 H 1.08997 * 117.49732 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4069 2.0983 -1.3962 5 1 1.4942 2.6252 0.7879 6 1 3.5886 1.4159 0.6084 7 6 2.0045 -1.1940 -0.0005 8 1 1.4707 -2.1258 0.1145 9 6 3.5036 -1.1985 -0.1552 10 6 4.0367 -0.5526 -1.4356 11 7 3.6011 -1.3348 -2.5952 12 6 4.0323 -1.0074 -3.8294 13 8 4.8494 -0.1184 -3.9719 14 7 3.5579 -1.6656 -4.9056 15 6 4.1009 -1.3813 -6.2362 16 6 3.4052 -2.2437 -7.2575 17 7 2.3127 -1.9349 -7.9239 18 7 1.9898 -2.9018 -8.7180 19 6 2.8555 -3.8612 -8.5941 20 7 3.7858 -3.4563 -7.6562 21 6 4.9140 -4.3006 -7.2721 22 6 4.5194 -5.7696 -7.4261 23 7 3.8584 -6.0452 -8.6956 24 6 2.9761 -5.1794 -9.2472 25 8 2.3285 -5.4676 -10.2353 26 6 4.2674 -2.4025 0.3997 27 6 4.3452 -1.0509 1.1140 28 1 -0.4850 0.8400 0.0004 29 1 3.6515 0.4637 -1.5175 30 1 5.1259 -0.5268 -1.4031 31 1 3.0024 -2.0884 -2.4746 32 1 2.8569 -2.3275 -4.7991 33 1 3.9394 -0.3307 -6.4776 34 1 5.1695 -1.5962 -6.2460 35 1 5.7667 -4.0833 -7.9154 36 1 5.1808 -4.1015 -6.2342 37 1 5.4170 -6.3840 -7.3561 38 1 3.8446 -6.0396 -6.6138 39 1 4.0527 -6.8767 -9.1558 40 1 3.6856 -3.1915 0.8762 41 1 5.1500 -2.7342 -0.1472 42 1 5.2789 -0.4939 1.0367 43 1 3.8146 -0.9500 2.0607 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001427425161.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:36 Heat of formation + Delta-G solvation = 28.661026 kcal Electronic energy + Delta-G solvation = -28365.923845 eV Core-core repulsion = 24254.891264 eV Total energy + Delta-G solvation = -4111.032580 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.70435 -41.06296 -40.70526 -38.80395 -38.09759 -36.33263 -35.01405 -34.84639 -34.26947 -32.43137 -30.94340 -29.05345 -27.86572 -26.46272 -25.81386 -25.26725 -23.17955 -22.35341 -21.92792 -21.09352 -20.70515 -19.58984 -19.11675 -18.53412 -18.31067 -18.10275 -17.42982 -17.12607 -16.93852 -16.39826 -16.11982 -15.95628 -15.69902 -15.53733 -15.01683 -14.97392 -14.83793 -14.48086 -14.29734 -14.00609 -13.92592 -13.71476 -13.25943 -12.98519 -12.85732 -12.59707 -12.12892 -12.03687 -11.94270 -11.75902 -11.60989 -11.47702 -11.36287 -11.02299 -10.86297 -10.68990 -10.41764 -10.38619 -10.33956 -9.70324 -8.30945 -6.33123 -0.24354 0.88554 0.98045 1.33162 1.40092 1.48404 1.60562 1.81048 1.90219 2.15458 2.34797 2.70289 2.95624 2.97812 3.16859 3.27514 3.51517 3.55148 3.82136 3.94484 4.05987 4.20095 4.35135 4.40879 4.47263 4.49465 4.51417 4.58714 4.63480 4.68873 4.82680 4.97633 5.11903 5.22156 5.30521 5.34456 5.55192 5.58922 5.62154 5.68997 5.70830 5.94651 6.31090 6.71050 6.73474 7.06567 7.20036 7.34897 7.54798 8.83411 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017336 B = 0.002661 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.771356 B =10519.106006 C =10886.000261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.033 3.967 3 Si 0.919 3.081 4 H -0.290 1.290 5 H -0.301 1.301 6 H -0.224 1.224 7 C -0.475 4.475 8 H 0.045 0.955 9 C -0.043 4.043 10 C 0.179 3.821 11 N -0.716 5.716 12 C 0.708 3.292 13 O -0.630 6.630 14 N -0.734 5.734 15 C 0.234 3.766 16 C 0.213 3.787 17 N -0.321 5.321 18 N -0.258 5.258 19 C 0.118 3.882 20 N -0.440 5.440 21 C 0.066 3.934 22 C 0.094 3.906 23 N -0.699 5.699 24 C 0.616 3.384 25 O -0.536 6.536 26 C -0.150 4.150 27 C -0.186 4.186 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.409 0.591 32 H 0.408 0.592 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.087 0.913 39 H 0.431 0.569 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.450 -15.410 -12.606 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.165 4.165 3 Si 0.746 3.254 4 H -0.217 1.217 5 H -0.229 1.229 6 H -0.147 1.147 7 C -0.512 4.512 8 H 0.063 0.937 9 C -0.044 4.044 10 C 0.054 3.946 11 N -0.369 5.369 12 C 0.408 3.592 13 O -0.512 6.512 14 N -0.392 5.392 15 C 0.107 3.893 16 C -0.056 4.056 17 N -0.165 5.165 18 N -0.101 5.101 19 C -0.152 4.152 20 N -0.133 5.133 21 C -0.054 4.054 22 C -0.029 4.029 23 N -0.355 5.355 24 C 0.398 3.602 25 O -0.409 6.409 26 C -0.187 4.187 27 C -0.224 4.224 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.245 0.755 32 H 0.243 0.757 33 H 0.112 0.888 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.168 0.832 37 H 0.187 0.813 38 H 0.105 0.895 39 H 0.271 0.729 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.549 -13.748 -13.582 26.104 hybrid contribution -0.285 -0.223 0.336 0.494 sum 17.264 -13.970 -13.246 25.858 Atomic orbital electron populations 1.70011 1.08061 1.27774 1.52125 1.25566 0.94870 1.02069 0.94043 0.86228 0.81379 0.80220 0.77531 1.21683 1.22863 1.14676 1.20417 0.89326 0.92821 1.48679 0.93684 1.19428 0.92311 1.01643 0.90991 1.20772 0.97392 0.92635 0.83799 1.44895 1.52202 1.35525 1.04281 1.15873 0.81125 0.81377 0.80837 1.90880 1.39328 1.35005 1.85970 1.44774 1.43836 1.45979 1.04650 1.19405 0.97025 0.97052 0.75785 1.24558 0.94768 0.86442 0.99838 1.75119 1.12573 1.20679 1.08160 1.74153 1.21967 0.97942 1.15999 1.24888 0.92440 0.99653 0.98206 1.46662 1.23093 1.14002 1.29496 1.23106 0.86241 0.88945 1.07090 1.22036 1.01983 0.94365 0.84549 1.45572 1.42460 1.22618 1.24853 1.16594 0.79967 0.81292 0.82371 1.90919 1.45694 1.77557 1.26744 1.22823 1.01568 0.90790 1.03497 1.23112 1.01300 1.01075 0.96962 0.92774 0.95689 0.91349 0.75543 0.75701 0.88816 0.85973 0.85179 0.83246 0.81333 0.89519 0.72884 0.89824 0.87661 0.88741 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.32 13.96 21.45 0.30 -56.02 16 2 C 0.03 1.82 5.46 84.66 0.46 2.28 16 3 Si 0.92 43.67 24.69 68.60 1.69 45.37 16 4 H -0.29 -14.27 6.96 99.48 0.69 -13.58 16 5 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 6 H -0.22 -9.50 6.12 99.48 0.61 -8.89 16 7 C -0.47 -24.03 9.19 25.60 0.24 -23.79 16 8 H 0.04 2.52 8.06 -2.91 -0.02 2.50 16 9 C -0.04 -1.68 0.85 -52.93 -0.04 -1.73 16 10 C 0.18 6.81 5.08 86.38 0.44 7.25 16 11 N -0.72 -23.83 5.48 -478.54 -2.62 -26.45 16 12 C 0.71 22.24 8.55 179.05 1.53 23.77 16 13 O -0.63 -23.97 16.33 -3.98 -0.07 -24.04 16 14 N -0.73 -16.61 5.55 -482.31 -2.68 -19.29 16 15 C 0.23 4.41 6.15 85.63 0.53 4.94 16 16 C 0.21 4.39 7.46 138.37 1.03 5.42 16 17 N -0.32 -9.65 12.26 -50.91 -0.62 -10.27 16 18 N -0.26 -8.12 12.24 -51.34 -0.63 -8.75 16 19 C 0.12 2.69 7.92 136.36 1.08 3.77 16 20 N -0.44 -6.42 3.12 -508.14 -1.58 -8.00 16 21 C 0.07 0.10 7.12 86.43 0.62 0.72 16 22 C 0.09 -0.14 7.03 86.48 0.61 0.47 16 23 N -0.70 -4.39 5.56 -467.14 -2.60 -6.99 16 24 C 0.62 11.95 8.04 86.62 0.70 12.65 16 25 O -0.54 -15.15 18.01 -4.04 -0.07 -15.22 16 26 C -0.15 -4.74 9.96 30.62 0.30 -4.44 16 27 C -0.19 -6.53 8.70 30.62 0.27 -6.26 16 28 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.03 1.11 4.25 -2.39 -0.01 1.10 16 30 H 0.07 2.38 8.06 -2.39 -0.02 2.36 16 31 H 0.41 12.71 8.36 -92.71 -0.78 11.94 16 32 H 0.41 8.26 8.49 -92.71 -0.79 7.47 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.13 -0.32 8.14 -2.39 -0.02 -0.34 16 36 H 0.15 -0.38 8.14 -2.39 -0.02 -0.40 16 37 H 0.17 -1.80 8.14 -2.39 -0.02 -1.82 16 38 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.43 0.80 8.92 -92.71 -0.83 -0.03 16 40 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 41 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.09 2.90 8.14 -2.39 -0.02 2.89 16 43 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -86.51 364.77 -2.53 -89.04 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -1.40 Total: 15.58 kcal Atomic # 6 Polarization: 17.30 SS G_CDS: 7.75 Total: 25.05 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -10.44 Total: -135.78 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.14 Total: -39.26 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.69 Total: 45.37 kcal Total: -86.51 -2.53 -89.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001427425161.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.703 kcal (2) G-P(sol) polarization free energy of solvation -86.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds