Wall clock time and date at job start Tue Mar 31 2020 17:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99864 * 2 1 4 4 C 1.53002 * 109.46791 * 180.02562 * 3 2 1 5 5 S 1.81392 * 109.47009 * 179.97438 * 4 3 2 6 6 O 1.42106 * 108.57783 * 65.51411 * 5 4 3 7 7 O 1.42101 * 108.58283 * 294.48827 * 5 4 3 8 8 C 1.81404 * 101.92178 * 179.97438 * 5 4 3 9 9 C 1.50702 * 109.47189 * 179.97438 * 8 5 4 10 10 O 1.21284 * 119.99704 * 0.02562 * 9 8 5 11 11 N 1.34776 * 119.99649 * 179.97438 * 9 8 5 12 12 C 1.47415 * 125.65278 * 354.77772 * 11 9 8 13 13 C 1.54906 * 104.83668 * 156.13586 * 12 11 9 14 14 C 1.55154 * 101.58080 * 37.00663 * 13 12 11 15 15 C 1.47022 * 125.64392 * 175.08273 * 11 9 8 16 16 H 1.09003 * 109.88395 * 300.21482 * 15 11 9 17 17 C 1.53002 * 109.88608 * 61.37729 * 15 11 9 18 18 N 1.46503 * 109.47207 * 185.22124 * 17 15 11 19 19 C 1.36936 * 119.99748 * 185.01435 * 18 17 15 20 20 H 1.08000 * 119.99831 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00004 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47286 * 89.99673 * 23 21 19 25 25 H 1.48503 * 109.46921 * 209.99902 * 23 21 19 26 26 H 1.48499 * 109.46796 * 329.99589 * 23 21 19 27 27 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47024 * 300.00244 * 1 2 3 29 29 H 1.08997 * 109.47313 * 59.99803 * 1 2 3 30 30 H 1.09002 * 109.46982 * 60.00546 * 3 2 1 31 31 H 1.09000 * 109.46802 * 300.00028 * 3 2 1 32 32 H 1.09000 * 109.47063 * 59.99547 * 4 3 2 33 33 H 1.09002 * 109.47089 * 299.99992 * 4 3 2 34 34 H 1.09004 * 109.46825 * 60.00509 * 8 5 4 35 35 H 1.08995 * 109.47435 * 300.00497 * 8 5 4 36 36 H 1.09005 * 110.36509 * 274.96943 * 12 11 9 37 37 H 1.08999 * 110.37017 * 37.29316 * 12 11 9 38 38 H 1.09009 * 111.00056 * 278.93335 * 13 12 11 39 39 H 1.08996 * 111.01072 * 155.08082 * 13 12 11 40 40 H 1.09007 * 110.72187 * 206.14060 * 14 13 12 41 41 H 1.08998 * 110.72231 * 82.86451 * 14 13 12 42 42 H 1.08999 * 109.46762 * 305.22626 * 17 15 11 43 43 H 1.08999 * 109.46755 * 65.22217 * 17 15 11 44 44 H 0.96990 * 119.99900 * 5.02318 * 18 17 15 45 45 H 0.97009 * 120.00117 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 16 4.2733 2.8417 -0.0014 6 8 3.9480 3.4827 1.2244 7 8 3.9469 3.4822 -1.2272 8 6 6.0472 2.4621 -0.0013 9 6 6.8357 3.7463 -0.0025 10 8 6.2579 4.8127 -0.0029 11 7 8.1830 3.7098 -0.0022 12 6 9.0095 2.4942 0.1084 13 6 10.3645 2.8756 -0.5383 14 6 10.5225 4.3505 -0.0834 15 6 9.0718 4.8764 -0.1057 16 1 8.8831 5.4044 -1.0404 17 6 8.8400 5.8141 1.0809 18 7 9.6376 7.0304 0.9052 19 6 9.6719 7.9756 1.8954 20 1 9.1107 7.8246 2.8057 21 6 10.4272 9.1282 1.7288 22 7 11.1107 9.3124 0.6192 23 14 10.4746 10.4173 3.0800 24 1 11.5920 10.1177 4.0109 25 1 10.6788 11.7590 2.4770 26 1 9.1907 10.4000 3.8258 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8463 -0.8900 32 1 3.8567 0.6438 -0.8908 33 1 3.8575 0.6435 0.8891 34 1 6.2949 1.8833 -0.8911 35 1 6.2950 1.8840 0.8888 36 1 9.1512 2.2257 1.1554 37 1 8.5478 1.6706 -0.4361 38 1 10.3123 2.8052 -1.6248 39 1 11.1722 2.2574 -0.1466 40 1 11.1448 4.9060 -0.7851 41 1 10.9357 4.4013 0.9239 42 1 7.7835 6.0770 1.1352 43 1 9.1378 5.3143 2.0026 44 1 10.1412 7.1661 0.0875 45 1 11.6383 10.1181 0.5026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482058732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:06 Heat of formation + Delta-G solvation = -124.029217 kcal Electronic energy + Delta-G solvation = -27120.347820 eV Core-core repulsion = 23073.552544 eV Total energy + Delta-G solvation = -4046.795277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.144 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.26097 -38.45365 -37.65826 -37.20496 -36.19555 -34.53349 -32.53421 -32.19658 -31.35710 -30.24939 -28.59249 -27.03836 -25.14118 -24.05191 -23.23672 -22.07936 -20.95850 -19.32693 -18.97051 -17.91319 -17.27999 -17.04912 -16.88200 -16.74516 -16.31890 -15.95848 -15.80857 -15.33011 -15.03437 -14.56111 -14.44465 -14.09339 -13.76343 -13.44987 -13.27685 -13.09334 -12.85181 -12.74909 -12.57538 -12.28418 -12.26641 -12.23745 -12.16466 -11.93068 -11.52636 -11.47367 -11.21511 -11.00766 -10.91708 -10.80429 -10.60725 -10.50847 -10.25549 -10.11895 -10.01889 -9.65835 -8.79624 -8.63464 -6.85467 -5.70587 -2.98684 -0.51536 2.38711 2.39981 2.68745 3.08657 3.48827 3.54117 3.56840 3.62357 3.66421 4.08047 4.12417 4.15666 4.47664 4.53548 4.67142 4.69270 4.72198 4.81974 4.84435 4.86048 4.91621 5.02348 5.11920 5.20243 5.27292 5.32204 5.49277 5.62213 5.74032 5.83036 5.94391 6.01437 6.14050 6.37326 6.46240 6.51757 6.78623 7.02764 7.40835 7.77495 7.93369 8.48163 9.59365 10.15183 10.51022 11.52457 Molecular weight = 334.14amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.002554 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.461011 B =10960.563150 C =12144.367169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.073 3.927 4 C -0.629 4.629 5 S 2.458 3.542 6 O -0.910 6.910 7 O -0.912 6.912 8 C -0.651 4.651 9 C 0.552 3.448 10 O -0.515 6.515 11 N -0.601 5.601 12 C 0.095 3.905 13 C -0.135 4.135 14 C -0.120 4.120 15 C 0.128 3.872 16 H 0.081 0.919 17 C 0.142 3.858 18 N -0.728 5.728 19 C -0.233 4.233 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.291 1.291 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.022 0.978 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.719 -26.389 -4.013 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.303 6.303 3 C -0.005 4.005 4 C -0.755 4.755 5 S 2.633 3.367 6 O -0.907 6.907 7 O -0.909 6.909 8 C -0.779 4.779 9 C 0.337 3.663 10 O -0.391 6.391 11 N -0.335 5.335 12 C -0.027 4.027 13 C -0.173 4.173 14 C -0.158 4.158 15 C 0.025 3.975 16 H 0.099 0.901 17 C 0.014 3.986 18 N -0.373 5.373 19 C -0.365 4.365 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.444 -25.091 -3.861 28.726 hybrid contribution 0.608 -0.094 0.468 0.773 sum -12.836 -25.184 -3.393 28.470 Atomic orbital electron populations 1.22852 0.80246 1.03265 1.00676 1.87895 1.20311 1.26562 1.95569 1.22041 0.89429 0.86586 1.02403 1.30659 1.06051 1.26050 1.12761 1.07306 0.76877 0.76397 0.76085 1.93618 1.81162 1.70215 1.45693 1.93605 1.81199 1.70308 1.45808 1.30802 1.26333 1.07465 1.13331 1.18608 0.81785 0.88241 0.77677 1.90931 1.68384 1.30452 1.49311 1.48341 1.04121 1.09345 1.71711 1.22426 0.91729 0.87408 1.01177 1.22812 0.95960 0.97618 1.00930 1.22686 0.95161 0.94321 1.03614 1.21962 0.88397 0.86139 1.00958 0.90085 1.21023 0.96547 0.87660 0.93418 1.42181 1.56422 1.17990 1.20661 1.19219 1.23276 0.97436 0.96521 0.91205 1.24724 1.00301 0.98461 0.97626 1.69658 1.34935 1.28113 1.25703 0.86162 0.77605 0.81243 0.81066 1.21809 1.21780 1.20730 0.89136 0.93486 0.93500 0.91206 0.91253 0.84072 0.84013 0.82298 0.82268 0.90835 0.90682 0.90629 0.89755 0.89491 0.89697 0.94401 0.96029 0.78330 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.25 10.70 -35.23 -0.38 -3.62 16 3 C 0.07 0.58 5.95 37.16 0.22 0.80 16 4 C -0.63 -3.80 6.17 37.16 0.23 -3.57 16 5 S 2.46 25.85 3.96 -107.50 -0.43 25.42 16 6 O -0.91 -13.39 17.95 -59.52 -1.07 -14.46 16 7 O -0.91 -13.09 17.95 -59.53 -1.07 -14.16 16 8 C -0.65 -5.44 5.22 36.01 0.19 -5.25 16 9 C 0.55 8.35 7.68 -10.99 -0.08 8.27 16 10 O -0.51 -10.52 14.40 2.55 0.04 -10.48 16 11 N -0.60 -8.47 3.07 -163.02 -0.50 -8.97 16 12 C 0.10 0.88 6.73 -2.54 -0.02 0.86 16 13 C -0.14 -1.26 7.08 -24.59 -0.17 -1.44 16 14 C -0.12 -1.67 6.24 -24.90 -0.16 -1.82 16 15 C 0.13 2.20 2.95 -66.95 -0.20 2.01 16 16 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 17 C 0.14 3.14 5.66 -4.04 -0.02 3.12 16 18 N -0.73 -19.25 5.42 -59.91 -0.32 -19.57 16 19 C -0.23 -6.83 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.94 -28.83 13.06 55.49 0.72 -28.10 16 23 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.14 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.14 0.54 8.14 -51.92 -0.42 0.11 16 34 H 0.16 0.66 7.96 -51.92 -0.41 0.24 16 35 H 0.16 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.44 7.48 -51.93 -0.39 0.05 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.24 8.14 -51.92 -0.42 0.81 16 41 H 0.08 1.28 7.76 -51.93 -0.40 0.88 16 42 H 0.04 0.95 6.53 -51.93 -0.34 0.61 16 43 H 0.02 0.48 8.02 -51.93 -0.42 0.06 16 44 H 0.38 10.38 7.61 -40.82 -0.31 10.07 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 384.92 15.07 5.80 5.80 Total: -1.00 -41.79 384.92 -8.69 -50.47 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.31 Total: 2.79 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 0.85 Total: -3.32 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.10 Total: -56.64 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -2.48 Total: -42.72 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Atomic # 16 Polarization: 25.85 SS G_CDS: -0.43 Total: 25.42 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -41.79 -8.69 -50.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482058732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.555 kcal (2) G-P(sol) polarization free energy of solvation -41.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds